Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00016151 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 9333693 ~ 9358730 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0007160 | cell-matrix adhesion | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0016757 | transferase activity, transferring glycosyl groups | molecular_function |
| id | description |
|---|---|
| K13675 | B3GALTL; UDP-glucose:O-linked fucose beta-1,3-glucosyltransferase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00016151 | True | 1167 | mRNA | 0.50 | 10 | 9333693 | 9358730 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00016148 | rxfp2,LOC106591039 | coding | downstream | 44369 | 9267201 ~ 9289324 (-) |
| AMCG00016144 | NA | coding | downstream | 149783 | 9119568 ~ 9183910 (-) |
| AMCG00016142 | NA | coding | downstream | 217539 | 9111277 ~ 9116154 (-) |
| AMCG00016141 | NA | coding | downstream | 222886 | 9089169 ~ 9110807 (-) |
| AMCG00016139 | NA | coding | downstream | 278114 | 9051060 ~ 9055579 (-) |
| AMCG00016152 | NA | coding | upstream | 47572 | 9406302 ~ 9410567 (-) |
| AMCG00016155 | NA | coding | upstream | 57792 | 9416522 ~ 9416725 (-) |
| AMCG00016154 | NA | coding | upstream | 61399 | 9420129 ~ 9427244 (-) |
| AMCG00016149 | NA | coding | upstream | 73900 | 9432630 ~ 9441739 (-) |
| AMCG00016153 | NA | coding | upstream | 94090 | 9452820 ~ 9456545 (-) |
| G11571 | NA | non-coding | downstream | 19246 | 9314000 ~ 9314447 (-) |
| G11482 | NA | non-coding | downstream | 274593 | 9055904 ~ 9059100 (-) |
| G11346 | NA | non-coding | downstream | 1001890 | 8326182 ~ 8331803 (-) |
| G11345 | NA | non-coding | downstream | 1012651 | 8320697 ~ 8321042 (-) |
| G11314 | NA | non-coding | downstream | 1159719 | 8173689 ~ 8173974 (-) |
| G11633 | hmgb1,LOC105901051,LOC103353583 | non-coding | upstream | 77072 | 9435802 ~ 9498753 (-) |
| G11650 | NA | non-coding | upstream | 184778 | 9543508 ~ 9543743 (-) |
| G11658 | NA | non-coding | upstream | 231005 | 9589735 ~ 9594953 (-) |
| G11662 | NA | non-coding | upstream | 337043 | 9695773 ~ 9696054 (-) |
| G11675 | NA | non-coding | upstream | 609847 | 9968577 ~ 9968783 (-) |
| AMCG00016134 | NA | other | downstream | 505933 | 8823545 ~ 8827760 (-) |
| G11326 | NA | other | downstream | 1139261 | 8191546 ~ 8194432 (-) |
| AMCG00016119 | NA | other | downstream | 1209660 | 8119221 ~ 8124033 (-) |
| AMCG00016110 | ufm1,LOC107701138 | other | downstream | 1580256 | 7680911 ~ 7753437 (-) |
| AMCG00016074 | NA | other | downstream | 4403793 | 4903856 ~ 4929900 (-) |
| AMCG00016176 | NA | other | upstream | 1475682 | 10834412 ~ 10847811 (-) |
| AMCG00016194 | NA | other | upstream | 2407422 | 11766152 ~ 11781547 (-) |
| AMCG00016203 | zdhhc20,LOC108438268,LOC106578454,LOC108256609 | other | upstream | 2473698 | 11832428 ~ 11947322 (-) |
| AMCG00016211 | NA | other | upstream | 2964431 | 12323161 ~ 12329033 (-) |
| AMCG00016226 | NA | other | upstream | 3491148 | 12849878 ~ 12870560 (-) |
