AMCG00016176


Basic Information

Item Value
gene id AMCG00016176
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 10834412 ~ 10847811 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016176
ATGGCCTCCGCTTCACCTCACAACCGCAGCCGCAGCGAGGAGCAGGATGACCCGGTGGATAAGATGATCTCCCAGACCGGCTGTGCTGATCTGCATCACGCTGTGCAGGACTGCATGGCGGAGCACCAGGACTGGAGGAAGTGCCAGCTGCAGTACTGCATCAGCTCCACCACCGAGTCCAAAGTAGCCGAGGGCTCACGCCTGGCCTTGGGGGTAGAGTGA
>TU14519
TCCTGTCGACTGAAGTCAGTCTTCCTGATAGTCAGGGCAATAAAAAGCaaGGATCCAGCATGGCCTCCGCTTCACCTCACAACCGCAGCCGCAGCGAGGAGCAGGATGACCCGGTGGATAAGATGATCTCCCAGACCGGCTGTGCTGATCTGCATCACGCTGTGCAGGACTGCATGGCGGAGCACCAGGACTGGAGGAAGTGCCAGCTGCAGGTGCAGAGCTTCAAGGACTGCATGCTGGCGTTTCAGAAAGTCAGAGCGCAGGCGATGGAGAGGCACAGGCTGCCACAGGCGCAGACCTGAGACAATGTCCGCAgttgtgcgcagatctgcagaattccagcgctcccattggtggagccgcgcagaactgcgcacATCTGTTCTACTCGACCGCGACCTATAACCCCTGATAAGTGAATCCGATGAAAAGACGTTTACCGGCCACAGTCAATTTGAAATAACTTCCTGAGTTTGCAACGACGTCAATCCTGATTTCATGATAAAAATCAGACACAcaataatcattacatttatacaactgAGGGTTGATCTGTTAGTTGCTGTAGGTGGCAGTTTCCCGTTTGAATGTGTGTGGGAATGCTTTATTTTCCCGGGAGGGTTTGTTCTTAAGTGACTTAAGTGactgtgattaaaataattgt
>TU14520
TCCTGTCGACTGAAGTCAGTCTTCCTGATAGTCAGGGCAATAAAAAGCaaGGATCCAGCATGGCCTCCGCTTCACCTCACAACCGCAGCCGCAGCGAGGAGCAGGATGACCCGGTGGATAAGATGATCTCCCAGACCGGCTGTGCTGATCTGCATCACGCTGTGCAGGACTGCATGGCGGAGCACCAGGACTGGAGGAAGTGCCAGCTGCAGGTGCAGAGCTTCAAGGACTGCATGCTGGCGTTTCAGAAAGTCAGAGCGCAGGCGATGGAGAGGCACAGGCTGCCACAGGCGCAGACCTGAGACAATGTCCGCAgttgtgcgcagatctgcagaattccagcgctcccattggtggagccgcgcagaactgcgcacATCTGTTCTACTCGACCGCGACCTATAACCCCTGATAAGTGAATCCGATGAAAAGACGTTTACCGGCCACAGTCAATTTGAAATAACTTCCTGAGTTTGCAACGACGTCAATCCTGATTTCATGATAAAAATCAGACACAcaataatcattacatttatacaactgAGGGTTGATCTGTTAGTTGCTGTAGGTGGCAGTTTCCCGTTTGAATGTGTGTGGGAATGCTTTATTTTCCCGGGAGGGTTTGTTCTTAAGTGACTTAAGTGactgtgattaaaataattgtgacATGACACAAACATAAGTCACGAAATTgttctttttcagtttaatcaatgtaaatgtattaaaacacttaaacaaAGTTACAATCACATTCCATA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016176 False 222 mRNA 0.62 2 10834412 10847535
TU14519 False 664 TUCP 0.42 2 10846931 10847811
TU14520 True 761 TUCP 0.40 2 10846834 10847811

Neighbor

gene id symbol gene type direction distance location
AMCG00016173 NA coding downstream 716193 10075455 ~ 10118219 (-)
AMCG00016171 NA coding downstream 914638 9904963 ~ 9919774 (-)
AMCG00016172 NA coding downstream 929470 9904043 ~ 9904942 (-)
AMCG00016167 NA coding downstream 961987 9863271 ~ 9872425 (-)
AMCG00016169 NA coding downstream 1000130 9833338 ~ 9834282 (-)
AMCG00016178 NA coding upstream 153929 11001740 ~ 11034263 (-)
AMCG00016177 NA coding upstream 186455 11034266 ~ 11126738 (-)
AMCG00016179 NA coding upstream 376645 11224456 ~ 11237516 (-)
AMCG00016185 NA coding upstream 596544 11444355 ~ 11445310 (-)
AMCG00016183 NA coding upstream 623915 11471726 ~ 11475792 (-)
G11734 NA non-coding downstream 118885 10715319 ~ 10715527 (-)
G11733 NA non-coding downstream 122146 10712062 ~ 10712266 (-)
G11712 NA non-coding downstream 317650 10516552 ~ 10516762 (-)
G11701 NA non-coding downstream 504475 10329642 ~ 10329937 (-)
G11700 LOC100846954,LOC107575789 non-coding downstream 504821 10329146 ~ 10329591 (-)
G11751 NA non-coding upstream 60042 10907853 ~ 10908076 (-)
G11754 NA non-coding upstream 95715 10943526 ~ 10943774 (-)
G11759 NA non-coding upstream 130372 10978183 ~ 10978394 (-)
G11801 NA non-coding upstream 493059 11340870 ~ 11341449 (-)
G11805 NA non-coding upstream 539920 11387731 ~ 11388125 (-)
AMCG00016134 NA other downstream 2006652 8823545 ~ 8827760 (-)
G11326 NA other downstream 2639980 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 2710379 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 3080975 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 5904512 4903856 ~ 4929900 (-)
AMCG00016194 NA other upstream 918341 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 984617 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 1475350 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 2002067 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 2695537 13543348 ~ 13559184 (-)

Expression


Co-expression Network