AMCG00016187 (rhog,LOC106613190,LOC107749931,LOC107667433)


Basic Information

Item Value
gene id AMCG00016187
gene name rhog,LOC106613190,LOC107749931,LOC107667433
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11647731 ~ 11662835 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016187
ATGGTGCTTTATGCTCTCGCCCTGGCTGTGTACTGGGGCGGGTCCTTCCCAAACTCCGCGGGCTGGAGCAGCATCGCTGACCGGACTGGGGCTGCTCTTCAGCAACGCCTCAGAGAGACGGGGACTGTATGCGAGACATCCAGTGAGAGATCCCATAGAGAGAAACAAGATTATGTTTGGATGCTGAAGAGGTGAACGGGCGAGAATGCAGAGTATAAAGTGTGTGGTGGTGGGAGACGGCGCCGTGGGGAAGACTTGCCTTCTGATCTCCTACACCACCAACGCCTTCCCCAAAGAATACATCCCCACCGTCTTCGACAACTACAGCTCCCAGGTGACGGTGGACAACAGGACTATTAGCTTAAACCTTTGGGACACGGCTGGCCAGGAGGAGTATGACCGGCTGCGCACCCTGTCCTACCCGCAGACCAACGTATTCGTCATTTGCTTCTCCATTGCCAGCCCGCCCTCCTACGAGAACGTCAAGCACAAGTGGCACCCGGAGGTCACTCACCACTGCCCCAACGTACCCATCCTGCTGGTGGGCACCAAGAAGGACCTGCGCAACGATGCCGATGTCTTGAAGAAGCTTAAAGAGCAGAACCAGACCACCATCACTCTGCAACAGGGCTCGGCCTTGGCCCGTCAGATCCATGCCATCAAGTACCTGGAATGCTCGGCCCTCAACCAGGAAGGCATCAAGGAGGTGTTTGCCGAAGCCGTACGAGCCTTCCTCAACCCCCTCCCCGCCGCCACCAAGAAACCTTGTGTGCTTTTGTAGAGGGTCAGCCATCACAGcagcagaaaacagaagaaataataataatcatatagataataataaagataacatgaggagaaatttaaaaaatgagaagaaaaaataaatccatgatGTGGCAGTAATCTTAGCTGTTATTATATTCGGGCCATGTTCAGTTTACCCCCGAGAGGAAAGGTTTTAACTAGAGAAAAGTGCAATTTTAGAtagtttttgatgttttttgaaAGCGGACATAAGGTGAGAGTTGTCCTCAGGCCGGTGTCCCGCATGTAATTCCAGCTTTGAATGCTGTTGTATCGGAAAGATAAAATATCTTTTATCACCTTTTATCTTTCTGCATTCTtaatcaccccccaccccctcctatTTCTTTGCTTACCTTCTTCTTTTCCAAATCTCTCATTTCTGTGGAGAAAGCGAAAATGGAAACACAGCTTAAATAACAGCTCTCATCTTTGGGGCGCCATGTGTTTATATGGACCGGCACAGAGACTTAAAGCAAGAATGGGTTAGTTATAGAACAGTTTAGAAACTATACTCTTTCTCAGATAGGACAGTAAGCCAAAAAAGTTAgacctttttactttttaactttttttttgtaacaggCTCTAAATCTAGAAGGTAGAATAAAATCACCAAACCACTATCTACGAAATGTGTTCTAACCCTGATAGGCCACCATTAACTATGTAAAGGGCCTGTTCTGTATTTAGGCTGCTTCATTCCTACTGGTTCATTTGTTCAACATGGTTTGCTGACCAAAAGCTGTCTTTCTCCAGGTTGATGTAAACAGCTTGTCGGCATGTCTTGTGTATAGACCTCTACTCGAGGGCAGTTCAGTTCTCTGTTTCATGTAATAGTGGTGGAGCAAGGTTTTgcacatcaaataaaatgcttttattgtgaCTTTACCTGTATTttgccttcactgtgctttactacactgggACTACCATAATGTACCATAATAAATGTTTCTAAGTTTCTAAGGCATGTTTACCATACTTCATTATGGTCCAGTGTATACAAATATTGTGGAGGCATGTTGAATCTAATAGAAGAAACACTGGTAAAATCATAGTGAAACCATgttcaaagtaattaaaagtaatcCTATGGTAAATTGACAAACAAACTTGCATAAGGGCACTACTAGTAGAATGATTCAcgcaaactttttttaaaatagatattGAGATGACTTAAACATCTGCAAAGGTGCACAGGTGCCGtgtgatattaaataaaaaaactgagatAACTAAGTAATgatatgttgttttattcaggGTGCAGTAAGACTTTTAACAGCAGACTCATAAACTCAAAAGAGCCCTAATCTCCAGCCTAGCTCAGTCAGTTCTGACTGCtcctttctttaaaagaaatctaatcaaacaataaaatagGCTGGCTACGGTCCCAGTTATTCACTAACAAATCAAATCAGGCATTTTTGTTACTGAGGCAGCAAGGGAGCAATATACTACCCATATGATTTAACTAGTGGGAGTACTTCTACATCAAAGCTGGAATACGCCAATAGACAGATATGCACAGAGCACCAGTGCGAAGTGTTGTGTCTGTGGTTGTCAGTGTGCCCTGAGAATGACGAATTTCAGCAATGCTGGTCTGGCCTGAATTCTGATTGGTGGGGAACACTGCATGGGAGTACTTGGGAATTGGAAGACCAGTGAATGGAGAGAGGCAGTGGAGCCCAGCACCTCCTCCCAGTTTTCACTATTTTCGCTTCATATATCCCGTTACTCTTTTACAGTTGAGGTTCTTTTAACAATATTATgggtctgattttttttttatctgagggttgttgtttttttttacttgacaGGTTCATTTGCCATAGTGTTTGAGAGCGaccattttgtttctcatgaaTGAAATTTTCCCTTCACAGAAATTGTCCCTGATACGTCATTTGCCTTTGTGTCTATTTGCAAACTTCTCTTTTACTGCACTGCGAAAGgaatgtctttgtgtttttgttttaatttgtatggaGGAAAAAcgattttgaaaaatatatattgtgttaataAAAAGGTACCATATCATCCCACAAAATACTTCCATCAACCCTAAAGACTGCAACATTTGACTGTGTGCTTGATGGTGTGTTTCTGTATAATGGAAGACTGTTATAGagtatacaaatgtatttttgccaGTGGGCCTGCTTATGGGCACCTGCTTATGTATACAATGCTGAAACAGCAAACATTAACCATAGTAGACTGCAGTCTTTACTTCAGGTGGCTTTAAtgggttgtgtgtgttgctttcaGCGAGGGTACTAGTTTCTGGTGGGTTTAGTTGATGCAGAGGTGTGGGTTCTGCTGATTTCACAGGAAGCAGCTGTGTCTGTATAAGGCTGTGTACCAGAAAGCAGTGTCTGGTTTCCAGATATCTTCACTGGGCTTAGAAACCTGCAGAGCACAGATTTAAACAAGGCCTGTCCAGTTACTACGAGCTAAGAGCATGAAATAATAAAGCTGTTTGGGACTTTGAATGTACCTTGAGACAGTTTCACCTAGCTGCTGCTAATTCTATAACTGagttataataaatacagtggTTTATGCATGATAGCCATTGGAACTGGGTCAGTAGATGCCATGACAGCAGATGAGCACAGCACTGTACAAATCTGGATCTTTTCTTTGCAGAGGTGCAAAGAGGGCACAGGGACACATAATCAAGGGTCACTTACCACCGTTAAACATACCTCTCTGACTTTGTCTTTTTATGGTTGAATTTCATGTGTATTTTTAGGGATTGCTGATGTCCCTCTGAAACAACACAATCTCAGTGTTGGCAATTGTGTTTGCTGGGCACCAcgcttttaatttgaatgatttcTTAATTTGTCGGTTCTACATTCTGGAATACCCTGTTTAGCCCCTTGTTTGTGCTTCTGCAACTTAACATGTTGTGCActgatgtaaaaatgtacaaaaaaagtaATGGATAATCGAGTAGCTGTAAGGTTTGACATCAGTtaatgtcatttatttgttcatttgttcaaACATACTGCATACTAGTAGGCTGCAGTCCAGACACAAGTCACTGTTCACTCTTCCCTTGtcaacaatttaaaacaaacaagacattaaaaagtaaatctcGCTCCCACAAAATGTATAGATGTGATTATCTTTCCTGTGGGCATTCAGTTAACCCCATTCACCTGAATGAGGAAACTGATGATATTTCAAATGACAGCTGAATGAATTTCAGAGCTTTCAGAGCATCACTGAGACCTCACAGTTGTCACTAAAGTATTGCTGTTGCTTCACGTATGAGGGGAAAGAAATGGTGTCCATTTCAGAAGTGTGTTACACTGTGCgattaataaaagcaaaacaaacagcttCAGTGAAAAACAGGAAACTGCAAGGTTAAATTTGAAGCCACTACAGCACTTGGTAGAGCACTGAACTGTGCTATTTGATTCTAGAATAATGCCAGATATGGTTGAGTTGAGCAGTGTTCCTCAGCTGTCACGTACTAAACCACTTATTTAATTGGCTGACAGCCTGTGTATGTTATGTTCCTTATATTGCAGATCCAGCTAATGCTGTTATACAGTTCTTCCTGAAGATTGTACTTGGTGGGTCTTTGTCTTATGCAGTTAATTGTGCTGCAAGGAATACCACTAGAATTATTCTCGTAAAGCAAATGTCTCTGTGATAGGAAAGTAATAATTCATGGAAAAGCCACTGTCAGCCTAAACGATTTGATAGTTCACTATCACTTGTCTCTGTataccaaaatatatttgtttctccCTCTTTTTTGTATCAATTTGAATGCTCCTTGCTtgaatgttctttaaaaattcttttaatttatgagtttagcattttgtaattaaataacactttaaaaaatatgaaaaaagtaattcatttgaagaaaatgtcattttttgaTATGAATATGTTAATTGCTTTATCTTGtctaaaattaaacttaaatgtatatCCAGACCACTTTTAACCTCATGCTACATTTTTGTGTAATCAGTACTTTTTATGCCTGTGTTGCCTCCATACTGTATTTGTACAACCCTAAATAGCTGCCAGTTTGGCCAGATTCAAATGCTTTGGCTGAAATCAGCAGTTTCCCAATGAAGTAGAGAAGGGACAGATTCACAAATATGATCATTTCCACACACTCACGTCACAATGAAGAGAATACCccaaaggttttaaaataaaggtgAGCAAGCACAAAATCCCATTGGCTTTCTATTGGTTTACTTGGgaattgcatttaaaagagTCAGATTAGCACTCATTCTTCAGATATTCATATACAGgattttgtgtattatttttttcaaacagtaACTGGAATTCTTAATTTGTGATGGTATACCTATATGGGAGAAAACTAGTGTTGtaatgctgtaaaaataaaggTGTCA

Function

symbol description
rhog Enables GTPase activity. Involved in activation of GTPase activity; cell chemotaxis; and positive regulation of protein localization to plasma membrane. Acts upstream of or within Ras protein signal transduction; actin cytoskeleton organization; and positive regulation of transcription, DNA-templated. Located in extracellular exosome and focal adhesion.

NR:

description
PREDICTED: rho-related GTP-binding protein RhoG-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0009617 response to bacterium biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07863 RHOG; Ras homolog gene family, member G

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016187 True 5240 mRNA 0.40 3 11647731 11662835

Neighbor

gene id symbol gene type direction distance location
AMCG00016188 NA coding downstream 24672 11604817 ~ 11623059 (-)
AMCG00016189 LOC107685497,LOC106603565 coding downstream 56634 11583814 ~ 11591097 (-)
AMCG00016183 NA coding downstream 171939 11471726 ~ 11475792 (-)
AMCG00016185 NA coding downstream 202421 11444355 ~ 11445310 (-)
AMCG00016179 NA coding downstream 410215 11224456 ~ 11237516 (-)
AMCG00016195 LOC106953351,LOC103475760,LOC103145618,LOC106922176,LOC107098229 coding upstream 56580 11719415 ~ 11729797 (-)
AMCG00016201 NA coding upstream 155253 11818088 ~ 11836421 (-)
AMCG00016199 pdk3,LOC106578452 coding upstream 185449 11848284 ~ 11866869 (-)
AMCG00016200 NA coding upstream 205952 11868787 ~ 11886193 (-)
AMCG00016204 LOC104943497 coding upstream 243241 11906076 ~ 11943652 (-)
G11814 NA non-coding downstream 163938 11483562 ~ 11483793 (-)
G11807 NA non-coding downstream 247313 11400207 ~ 11400418 (-)
G11805 NA non-coding downstream 259606 11387731 ~ 11388125 (-)
G11801 NA non-coding downstream 306282 11340870 ~ 11341449 (-)
G11759 NA non-coding downstream 669337 10978183 ~ 10978394 (-)
G11858 LOC106904821 non-coding upstream 38756 11701591 ~ 11717417 (-)
G11865 NA non-coding upstream 75510 11738345 ~ 11738599 (-)
G11996 NA non-coding upstream 575950 12238785 ~ 12239014 (-)
G12041 NA non-coding upstream 690325 12353160 ~ 12353381 (-)
G12046 NA non-coding upstream 691840 12354675 ~ 12355364 (-)
AMCG00016176 NA other downstream 799920 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 2819971 8823545 ~ 8827760 (-)
G11326 NA other downstream 3453299 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 3523698 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 3894294 7680911 ~ 7753437 (-)
AMCG00016194 NA other upstream 103317 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 169593 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 660326 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 1187043 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1880513 13543348 ~ 13559184 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019035 rhogb coding NC_007132.7 CM002905.2 30937690 ~ 30951909 (+)
grasscarp (Ctenopharyngodon idella) G142248 NA non-coding CI01000027 null 7335871 ~ 7354238 (-)
mexican tetra (Astyanax mexicanus) G119726 rhog,LOC107749931,LOC107667433,LOC107673813,LOC107557087,LOC107737593 unknown NC_035910.1 CM008313.1 6288863 ~ 6292980 (+)