AMCG00016188


Basic Information

Item Value
gene id AMCG00016188
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11604817 ~ 11623059 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016188
GTCGTGGGTTTATGTGCgtttgaatatgaaatgcagTCAACACCGCGTTTTCAAAAGTTGCAGTGTCGTGTAGTGTTCTGAACAATACGGCCTTCTTGCTACAATACAACAGTTACTTCGTGGctaaatacattgaattgtCACTTTAATTGTCACAGTTTTTTGTATAAGTAGTAATAAGTATACGTTTTAGACAAAAAGTCAGTCAAATGCATTGTGTGCAGCTGCATTGGGTCATtgattacatatttgtttatccaaggttgtttttgtaaaaatataggCAAAGACGTATGCAGTCCTGATAGCAACAGAAGATGTTCAATAAATCATTTGGAGCTCCATTTGGGGGAGGCACTGGCGGATTTGGAGCTTCATCCACATTTGGGCAGAATGCAGGGTTTGGAACTACAGGTGGGTTTGGTGCCTCTGCATTTGGTTCCACTAATAACACTGGCGGGCTCTTTGGGAACACCCAGAATAAGCCAGTGGTGACCGCAAATCCTCAACAAATCTACACTGGTGCCGGTAGAGGAGGTGGACTCTTTGGCTCCAGTACCTTTAGCCAGCCTGTGACATCCTCCACTAGCACAGGCTTTGGGTTTGGTGCTGCCAGCGGCACCACCAACAGCCTGTTCGGCACCACCAATACAGGAGGAGGCGGCCTCTTCTCACAGCAGAGCAATGCCTTTGGTCCAAACAAGCCAGCCGCTTTTGGCACATTTGGCACCAGTACCAGCAGCGGTGGACTGTTTGGCACTACTAGCACGAACTCCAACCCGTTTGGAGGAACCTCTGGGTCACTCTTTGGCTCTTCTGGATTTGGTGCTACCCAGACTGGCACTACCTTGAAGTTCAATCCCCCCACTGGCAGTGACACAATGGTAAAGGGAGGAGTGACTACAAGCATAAACACCAAACACCAGTGCATCACGGCAATGAAAGAATATGAAAATAAGTCCTTGGAGGAACTACGGCTGGAGGATTACCAGGCTGGAAGGAAGGGTCCCCAGAACCCCATGGCCGGAGGAACAGGTGTGCTATTTGGTGCCGCCACTGCGCCAGCCAGCACAGCTACTGGGCTTTTTGGGTCATCTGCAACAAATACTGGCTTCTCCTTTGGGCAGAAAAATACAGCCTTTGGAACCAgCACGGGTGGCTTTGGCACTGCTGCTGGCAGCCTGTTTGGTCCGCAGCCGACCCAGCCAGGCGCCACTCTATTCAGCAAGCCTTTTGGCCAGGCCACCACCACCCCGAACACCGGTTTCTCATTTGGCAACACCAACACCATGGTCCAGCCTAACACCAGCAGCATGGGGTTGTTTGGAAACACCGCATCTCCGTCTGGAGGGCTGTTTGGTAACACTGCCAACACCAGCACTGCAACTGCTTTTGGGACTGGCACAGGACTCTTCGGACAACCCAATGCTGGCTTTGGCAATGTTGGCACACCGAATCTTTTTGGTAACAAGCCAGCTGGATTTGGCACTACCACAACCAGTGCACCATCATTTGGTACAGGCACTGGCCTGTTTGGAAACAAACCCACCCTTACTCTGGGCACCAATACGAACACCTCTAATTTTGGATTTGGTGCAAATGCTGCTGGTGGAAGCATTTTTGGTAACAAACCAGCTGCAGGAGGATTAGGCACAGGACTGGGAACTGCTTTTGGAGCAGCTGTTGGCACCGGACAAACATCTCTCTTTGGAAATCAGAATAAACTGGGGTCAACCCTGGGCACTGCAGGCACTTTTGGGCAGCCTGGATTCAATGCCACTGCTAGCAATCTGGGCTTTGGAGCACCTCAGCAGCCAGTTGCCCTGACAGACCCCAATGCTGCGGCAGCTCAACAGGCACTGTTACAACAGCAGATAAATGCCCTGGCATATGCTCCTTTTGGGGACTCCCCTCTCTTCAGAAACCCTCTGTCTGatccaaaaaagaaagaggagCGTCTTAAGCCAACAAATCCAGCTGCCCAGAAAGCCTTGACCACCCCGACTCATTACAAACTGACCCCCCGTCCAGCCACTCGAGTTCGTCCCAAAGCCCTGACGTCTTCTGGCTCCTCGAAGTCTCAGCTGTTCGATGGGCTGGACGATGATGAACCTTGTTTTGCCAATGGCTCCTTTAAGCCCAGCCAGAGCATTGACGAGGAATCTCGGCAACATGAAGTGGAGAGAGTAGATGATGACCTGGAGGTGTCCAAGTTCTACACCAATCCTATTGCAAAGCCCATTCCCCACTCTCTGGAGGGCAAACAGAACATTTCCATGCAGGACACCTTGACTGAGCTGAACGTGCGCAACGTGCAGCGGAACGGGCTGGAGGCCAGCAGTGAAGACGCCTCTTTAGGAGACGATTCTCtgcaggaggagagggaggaggagctGGAAGGCCAGCAGACCCCACACCCAGCAGGCATTGTCCTTGGACGTATAGGGTACTACACTATTCCATCCATGGATGAGCTCGCCAGGATGGTCAACGAGAACGGAGAATGTCTGGTGGAGAACTTCACTGTTGGCAGAAAAGGCTATGGCTCCATCTATTTCCCCGGGGAGGTGAATCTGACCAACCTGAACCTGGATGAGATTGTTCATTTCCGTAGGAAGGAGGTCATTGTGTACCCTGATGACCAGGCCAAGCCTCCTGTGGGAGAAGGCTTGAACAGACGGGCTGAGGTGACACTGGATGGTGTTTGGCCAAATGATAAAACCACTCGCAACCAAATCAAAGACCCAGAACGGCTCCTGGAGATGAATTATGAGAGCCGGCTGGAGAAAGCGTCCCGAAAGCAGGGCGCTCGCTTCCGGGAATACCGTCTTGAAACTGGGTCCTGGGTATTTGAGGTTGTCCATTTCTCCAAGTACGGACTGCAGGACTCCGACGAGGAAGATgatgtccccccccccaaagcaGAAATTAAGAAACTGAAGACTGCCAAAGTGCTTCCCCCAGAACAGCAGCAGCGATCGCCCACTCAGCAGATGGCCCTAAATGGGACAGCAGCCCCTCAAGCACAGAGCCTGGGGGTGCTGGAGCAGCTGAGCAGGGTGACCGAGCTGGACAGTGACATGGCGGATATCACGCAAGAGCCGCCCGCTGACAGCATGCTggaagatgaggaggaggaggagagctggGTGGAGGAGAGGGGCCGGGAGGCCGAGGCCATCACAGAGCACGAGCCCCTGTCTGCTTCCAGTCATATGGCATCCTCGCTTGGCATCAACCCACACACCTTGCAGATCATGAAGGCCTCTCTGTTTGCTGAGGATGACGAGTGTGACCTGTTCCAAGAGCAAGGTGTCAGCAGATTCTCGTACAAAATGGACTCCCCCCAAGATGTGGGCTCACCCCGTGTTTTATTCACTTCTCAAGGAAGACCATCTgTGGGAGGCTTACTACAGTCCCGGTTCAGCGCTGGCCCAACGACGCTCTTCTCGCAGCCCCAGGACACCTCTGGCAGCACCCCTCAGAGAGCGCTGCGCTCCACAGCAGCCGAGCCCTCGCGCCTGTCCCCTTGGCCCTCCTTAGGTCCTTCCTTCTTGATACCGACTCCCGCCCCCGAGATCCCCCTGCGCACTGTGGGGACCCGGCGGCAGCCAGGCCCAGTGTCCCTGGAGCACTCGGTGACGCTTGGCAAGGGCAAGCTGCTGATGGACATGGCCCTGTTCAAGGGCCGTTCCTTCCGTGTGGGCTGGGGGCCGAACTTGATGCTGGCTCAAAGCGGGGATCAGATCAGCAGCTCAAGCGGTGACACCCAGGATCAGCAGGCCGAGACCACAGGCTATGGATTTCTGCCTCAACCGGTGGCGCACACATCGTGTTGCCCATTTAAAGTGCACATAGAAAAGGTGGTCAGTGTGGAGTCTGTGGACATGGAGAGCCAGCGCAGTCTTTATTGCCGCCCCCTTGAGATTGAGCTGGAACACAGTACCATCAACACCGAGGAGGCATGCCCGCTAATCCAGCCATCTTCGGGCGTGGAGGCGCTCCATGAGTACGCCAAGTGGATCAGTGAGGTGAACAAGGAGCCACACACAGTCGATGCCACGGTCAAGCACTGGCATCTGGTGTGGACGCTGTGCGAGGCGCTGTGGGGTCAGCTTGGAGAACTGAACCCTTACACAGAGAGGGACAACGAGTACGTGCAGCAGCTGGAGCGCCGCAAGAGTTTCTCCCAGTGGCTGTCCCGCAGTGCGGCCCACAGCATCGAGGAGGAGGTGGGCCTGTCCCAGCACAGGAGCCATGTAGACGCCATCTTTAGCTACTTGACTGGTCACCGCATCAGCGAGGCCTGCAGGCTGGCTCAGAAGTCTGGTGATCACAGGTTGTCCTTGCTGCTGTCGCAGGCGGTGGGGAGCCAGTGCAGTCGAGAGCTCCTGGCCATGCAGCTGGTCGACTGGAACAGGATGCAGACTGACTCCTTCGTGCAGGAGGAGCGCCTGCGCATTTTTGCTCTCCTAGCTGGGAAACCGGTGTTGCAGTCTTCagacagctgtataaatgtctGCTCAGAGCTGGACTGGAAACGCTGCATCGCTGTCCACCTCTGGTACATGCTGCCCCCCACTGCCTCCATTGCAGAAGCTCTGTGCAAATACGAAGAAGCTTTCCAGGGCTCAGAAGAGTGTCAGAGGTATGCCTGCGCTCCCCTGCCTCCATACCTAGATGACTCTGGGCTCGGTCTGATGGAGGACAAGGAGAGTGAAGAGACTAGAAAATCAGAGCGACCCCTCTATGATATCTGCTTTCATCTACTGAAGCTTTACAGTGATAGGCATTACAGTCTCCAACAGCTACTCGACCCCTGCACTGTGACCTCTGACCGGCTGGACTATCGGCTGAGCTGGCACCTGTGGAACGCACTGCAGGCCCTCAACTACTCGCACCTCTCAGAGCAGTACCAGGGTCTGCTCCACACCAGCTACGCCGCACAGCTGGAAAGCGCTGGATTGTGGGAGATGGCTATATTTGTGCTGCTGCACACTCCTGACTCCAATCAGCGTGAGAGAGCTGTGCGGGAGATGTTGAACTtacactgccccctgctggagaCTGAGGACTCGTCGGAGCGGGAGCACTTTCTGACGGACAGGCTGCGTGTCCCATTGCAGTGGATCCACGAGGCCAAGGCCACGCGTGCCTGCCGAGAGGGAGACAAGCACAGAGAGGCTCTGCACCTCTACAGGGCAGGGCACTGGAACCAGTGCCACAGACTGGTCATTCAGCATCTGGCCTCTGATGCCATCATCAATGAAAACCATAGCTATCTCCTGGAGTTCTTGGAGGGTCTGGCAGCCCCTGAACGCTGTGCCGTCATCCAAGAATGGGACACATCCGGTCGGGTTTTCCTTGACTACATCCGTGTGATACAGACCTTGCAGGCCATTCAGAGGctGGAGGGTCCTGGGTAcgagctggagagactccacacCGAGGTGACATCCCTGTGCAGCAGGATCGAGCTCATTCAGTGTGCGACCGCCAAAGACAGGTTGGCCCAGTCAGAGATGGCAAAGTGTGTGGCCAACATTCTCCGTGTGGTGCTGAGCCTGCAGCAGGGAGGGCAGGGCACCCCGGACACCCAGCGCATCCCGCTCCGTCACCTGGCGCCGCACATCGGCCGCCTGCCCATGCCGGAGGACTACGCCCTGGAGGAGCTACGTGGCCTCACCCAGTCCTATCTGCGTGAGCTCACCGTCAGCCAATGACAGCCTGGCCTTGGACAAAAGAGGGCGGGGCAAAGCAAATGAGAATTCCAACCCTAGGACACTGGCTGTACTGTTTTTGTGTTGagatggcatttttttttcttccccctccaATTGATTGACAGTGGTTCATGGATAAAACATTCCTGTATTCAAAATTTTAACTtctccaattttttttttctttcccaaagcagcgacaaaataataataaaaaaaaaacgttagaGAAGACTACGtgtatgtttaataattaaactacattttgCAGAAGCTTGTTATAAAAACTTGttctatttttcatatttacccTGTTTCAAGGGAAAGTCATTGTAAATGAGTTTCTGCATAAAACAAAGTACAACTCGCTACATTTATTCACAGGAGTGTTTTTACATGATTTTGctgaacagatttttttttttttccccgttgtTGAATTCACCATTGGACTTGCCGACAGGTGTCTTTTAATCAAAGCCTCATTGTCATTATTACTACATTGGTAGACCTCAGTCTAATTTCTTAACTTACAACTTGAAATGTGTTTCTGGGGTCagggttgttttgtttgggaAGGGCCACATATTCAGTATTGTGGGGTCACTAACTTGAAAGGCAATTTGCAGGAAAGAGTAAGTCATCCTCTTTTTAATATGGTAGCAAATTTGAAATCGGAGGCATCTGGAAGAGTAAACCATGAGATGTACTGTGTTGATTTGCTTGGATGACTTTCCCATACTGGGGAAATCTACATGCAGACATGGACAAtctgtttttaacttttacacTGAATTGATTTAAACGACTTAATGCTTTTCTAGacaagaatgtgtttttgaGGCGAAGGCTAAAAGTACATCACGTAATGGttacagaaacagctgtgaaGCCATACACCAACTGCATGCTTTGGTAATGGTGTATTCATGCAAAAGGATAGCTTCTAGTATGGATAGATACTCATTCACTTTAAACTGCCAGTAATccatccatttctttttttttaaatagagccCCTTTCCCCCCTAGTGTATACCGAAAGAAATGTGGGCAATTACTGAATGCCATCTGGGTGCCATTCCCGCCCCCCCCCAAGTTTCTTCAGATTTTTAACttaagtttaaatgtaatttgcaaactggaataaacatttgttttcctataAAACACTCATGTCAACGAGACTTGGTTTTGCTGGCATTCAAGTCAATTGTTGGTGTTGTccatacaatacattttcataaacatgctgtaagtgcatctccagGTTTTGCAATGTTTACTTAGCACTTAATCTTAAAGTAGCTTTACCTGCCATGAGAATCTACAGGAGTTGTTAATGCATCTCCCAGGTAAAGCGTACGAGAGCACCCTGTAAGATACCCAAGAGTTTCATTTCAAGTTAACCCTTTATCCTTTTTTCATACATGGTTTAATTTTTCTAATTCACAGAAGATGACAATTTGCGTTTGACTGCATAAAGAATATTCATTATCCCTATACTTGATGTTGTGTAAAAACGcctggagattttttttttttttggtgtgtgtagTTCAAACCAATTTAATGCGTACTATTTATTCTTAAAGTTCTAAGCAATGGTCTACTGTCTAGAGCCATAGTTCTGCAGAGTCATTGACAGTAGTGCTGTGCAAACCAAATAGGAAAATGCGTTAATGTAGATAATTCatcttaaaacttttttttttttttttttttaaatctaatacaATTTTGTGCACCTATGTATCAGATCTGAATTTGCTTCCCCcctgatatttttaaaattcccTGTGGTCAAAGATGGTCCCTGGTTTGAGTGATGTGTTTGAAAGGTATGGCTAGATGCTTCctactgtacatactgtatttaatattgcTCCTTTTTCGATGGCTAGGGGAAGAATGCCTCTAGTATCTGTGCCTTCTAGGAAGATCTGGTCTGTCTTTCTGTGGGCGTTGGACTCTGTATGCATGGTTGTGTTCATGATCTGTTTTTATTgaatactgaacaaaaatgaatgattCTATTTTTTGTCTTCAGAGTTGTGTCCATTGCCAgtgattttgttgtatttttaatttagaataaaCATTGGAAACTAA

Function

GO: NA

KEGG:

id description
K14297 NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016188 True 7835 mRNA 0.50 33 11604817 11623059

Neighbor

gene id symbol gene type direction distance location
AMCG00016189 LOC107685497,LOC106603565 coding downstream 13720 11583814 ~ 11591097 (-)
AMCG00016183 NA coding downstream 129025 11471726 ~ 11475792 (-)
AMCG00016185 NA coding downstream 159507 11444355 ~ 11445310 (-)
AMCG00016179 NA coding downstream 367301 11224456 ~ 11237516 (-)
AMCG00016177 NA coding downstream 478079 11034266 ~ 11126738 (-)
AMCG00016187 rhog,LOC106613190,LOC107749931,LOC107667433 coding upstream 24672 11647731 ~ 11662835 (-)
AMCG00016195 LOC106953351,LOC103475760,LOC103145618,LOC106922176,LOC107098229 coding upstream 96356 11719415 ~ 11729797 (-)
AMCG00016201 NA coding upstream 195029 11818088 ~ 11836421 (-)
AMCG00016199 pdk3,LOC106578452 coding upstream 225225 11848284 ~ 11866869 (-)
AMCG00016200 NA coding upstream 245728 11868787 ~ 11886193 (-)
G11814 NA non-coding downstream 121024 11483562 ~ 11483793 (-)
G11807 NA non-coding downstream 204399 11400207 ~ 11400418 (-)
G11805 NA non-coding downstream 216692 11387731 ~ 11388125 (-)
G11801 NA non-coding downstream 263368 11340870 ~ 11341449 (-)
G11759 NA non-coding downstream 626423 10978183 ~ 10978394 (-)
G11858 LOC106904821 non-coding upstream 78532 11701591 ~ 11717417 (-)
G11865 NA non-coding upstream 115286 11738345 ~ 11738599 (-)
G11996 NA non-coding upstream 615726 12238785 ~ 12239014 (-)
G12041 NA non-coding upstream 730101 12353160 ~ 12353381 (-)
G12046 NA non-coding upstream 731616 12354675 ~ 12355364 (-)
AMCG00016176 NA other downstream 757006 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 2777057 8823545 ~ 8827760 (-)
G11326 NA other downstream 3410385 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 3480784 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 3851380 7680911 ~ 7753437 (-)
AMCG00016194 NA other upstream 143093 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 209369 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 700102 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 1226819 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1920289 13543348 ~ 13559184 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_00230362_00248968 NUP98 coding CI01000006 null 230218 ~ 248968 (-)