AMCG00016204 (LOC104943497)


Basic Information

Item Value
gene id AMCG00016204
gene name LOC104943497
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11906076 ~ 11943652 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016204
ATGCAAGGTACCCATACGAGCCAGAAGGATGTCGTCATCTCCCCACGAAGGCTGCGCTTTAATCAGTTCGCCTCCATGGACTACGAGGGGGAGCCCTACATGACACCAAGGGATTTCCTCTTCTCGGTCATGCTCGAGCATGTGGACCAGGCGAACCACGGGAACAGTCACCCTGCGAGAGGCAAGCTGTACAAAAAGCTACTGACCAAAAAGGACGTTTACAGTATGCTGGACGCAGCAACCAAAACGAAGACTGGTCCCAGCCTTTTCAGGACTCTTGGGGATCATGAACCACACACAGGATTTCATATTGCATTCAAAATGCTAGACGTTGATGGCAATGAGCATGTGGACCAAAAGGAGTTTATGAAGAAATCTACTAACGAGCCCGACGAGGAGGTGAACACCACCCTGCAGGCGCTTTTTTTTGGAAAGGCAGGAAAGCAGAAGCTGCAATACAAAGAGTTCTGCAGGTTCATGGAGGACCTGCAGGCAGAAGTGCAGGAGATGGAGTTCCTGCAGTTCTCCAAGGGGATGGACACCATGCGCAGGGAGGACTTTGCTGAGTGGCTGCTGCACTACACCAACGAGGAGAACAACGAGGCCTACTGGGAGAACCTGAGAAAGAGGATCCCCCCCGGAGAGAGTATCACATTTGAGGAATTCAAGTCTTTCTGTTTGTTCACGAACAACATGGAGGATTTTGCCTTCACTGTGAAAATGATCAGTGAAGCCAACCGGCCCATTGGCATGGcgGAATTCAAAAGAGCCGTAACCATCGCGACGGGGCACGAGCTCTCGGAGAATGTGTTGGACACTGTTTTCAAGATATTTGATCTGGATGATGATAAATGCCTCAGTCACAAGGAGTTCCTGGGAGTAATGAATGACAGGATTTTGCGCGGGTTAAAGGTGCAGCCGCAGCAGGGCATGCAGGGATACTGGAAGTGTGTGAAGAGAGAGATGCTGAAAGGAGCGCAGGAGGCCATGAGACAGACTGGGAGGAGCCCCTTCTGATCGCTGACTACGAGGACTGGACTGCTCCTCTGTCCTCCCTGTCCTCCTGCACGACTGCTTGCCTGTGGATTGTATAGTTTACATGTGTGGTGATATGGGATACGGCACTTTCTACACCTGTTGTGGTTTACataaagcattataaaatgtatataatttctATATGGATTTGCattatgttgtatgtttttttgtctttgatttgactttccttattcattttctttttgtcatcGCCCCTGATGGCCATAAAATCCAGTATTTGTTAGTATTTGGTAAATCCATTTCTAAACAGGATTGTTCAGGACGGCATCATTGCCTTTGACTTTCTGCTGTTCCCGTGGCTTGTCTTCCTTGAGACGGTTCAACTCATTCCCTTCCTTTGACTTGTCTAAGTGGCCAGTGTTTCAAATCCTGGGTGTAAGGTTACAATATGGGCCCTAATCTCAGAGCTTCACCCGTCTGTCTGGGATACGTCTGTCATGGTTTTTCTTttggtcatgtttttttttcttattttgtgtgtttgaaaacaTTACAGGTTTCtaaatttaaagtaaaacactCAAGAACAGGTAACTTTTTTTCTACcgttatttttttgtacttttaagaTCCTATTTTgggtatttttgtgtgttttgagttTCTTAATGTTGTAAGTGTGCTGGTGAATGAATGGCATGTAACAATGCAGGTTTTGTTAACATTATAAAtttcacaaacaataaaaaacactttttcattttgtaata

Function

NR:

description
PREDICTED: calcium uptake protein 2, mitochondrial-like

GO: NA

KEGG:

id description
K22828 MICU2; calcium uptake protein 2, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016204 True 1772 mRNA 0.45 11 11906076 11943652

Neighbor

gene id symbol gene type direction distance location
AMCG00016200 NA coding downstream 19883 11868787 ~ 11886193 (-)
AMCG00016199 pdk3,LOC106578452 coding downstream 39207 11848284 ~ 11866869 (-)
AMCG00016201 NA coding downstream 69655 11818088 ~ 11836421 (-)
AMCG00016195 LOC106953351,LOC103475760,LOC103145618,LOC106922176,LOC107098229 coding downstream 176279 11719415 ~ 11729797 (-)
AMCG00016187 rhog,LOC106613190,LOC107749931,LOC107667433 coding downstream 243241 11647731 ~ 11662835 (-)
AMCG00016208 sacs,LOC106612984 coding upstream 264496 12208148 ~ 12236522 (-)
AMCG00016210 LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883 coding upstream 320622 12264274 ~ 12296060 (-)
AMCG00016209 NA coding upstream 353201 12296853 ~ 12320656 (-)
AMCG00016212 NA coding upstream 416923 12360575 ~ 12376528 (-)
AMCG00016217 dscam,LOC106612992 coding upstream 529611 12473263 ~ 12499001 (-)
G11865 NA non-coding downstream 167477 11738345 ~ 11738599 (-)
G11858 LOC106904821 non-coding downstream 188659 11701591 ~ 11717417 (-)
G11814 NA non-coding downstream 422283 11483562 ~ 11483793 (-)
G11807 NA non-coding downstream 505658 11400207 ~ 11400418 (-)
G11805 NA non-coding downstream 517951 11387731 ~ 11388125 (-)
G11996 NA non-coding upstream 295133 12238785 ~ 12239014 (-)
G12041 NA non-coding upstream 409508 12353160 ~ 12353381 (-)
G12046 NA non-coding upstream 411023 12354675 ~ 12355364 (-)
G12058 NA non-coding upstream 444146 12387798 ~ 12391408 (-)
G12096 NA non-coding upstream 694841 12638493 ~ 12638698 (-)
AMCG00016194 NA other downstream 124529 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1058265 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3078316 8823545 ~ 8827760 (-)
G11326 NA other downstream 3711644 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 3782043 8119221 ~ 8124033 (-)
AMCG00016211 NA other upstream 379509 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 906226 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1599696 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 2476704 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2841546 14785198 ~ 14791969 (-)

Expression


Co-expression Network