AMCG00016210 (LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883)


Basic Information

Item Value
gene id AMCG00016210
gene name LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12264274 ~ 12296060 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016210
GTTTTTcgtcattttttaaattgtcgaAAATGCACTTCAAAACCTAACCATGTTTCCAATATGTCTGCGTCCACTAAAGCATTGCACTGCGAAGCGTAACACGGTTGTTGAGCGCCGAGTACGCTAACATTTGTTCTTgtatatattgattattatCAGTTTCATAGTTCAAGGAAATGGAGGTGAACCCGCCGAAATATTCGCTGTGACCAACGCAACTCGTGGTCTGCTGTTAAATGTTCAAAGGTTGACAGTTCATTGCTAAGTTCAACATTGGGCATCGGCGTCGTTTCTTTCGTCAAACAAATCTAATACTTTAAAAATTGGAGCGAGTGCCAGAAAATAAGACCATCATGATGACTAGCAAAAGACTGCTGAGTATTTTGAAGCACAGCAAATTAAAGACAATATACAGGAGCGTCACGACCTCCTGGTCTCCGGTGGGAGCTGCTTTCAATGCCAGGCAACACAGGAAACCGGACCTGCTCAGCAAAAATGGGGGTCTGTTTGGAGTCCCAGAACTGAGCTCTCCGGCAGGGTTCGAGGTGGCCCAGGACAAAGCCTTGAAGGAAACGGTGCGGCTGGTAGATGAAGCCTGTACCGGCCCTCCTGGAGCGCAGACTGTGCAGACCTTCGACCGGCTGTCGGACAGCTTGTGCAGAGTGGCCGATTTGGCAGATTTTGTGAAGGTGGCGCACCCAGACCCTGCCTTCAGAGAAGCAGCAGAGAAGACCTGTATTAAGATTGGTACAGTTGTGGAAAAGTTGAACACGAATGTTGACCTCTGTAAAAGTCTAAAAGATTTATTAGATAAGAAAGAAGTTCTGTCATCTCTGGACCCAGAAACAAGAAGAGTGGCAGAACTTTTCATGTTTGATTTTGAGATCAGCGGAATTCATCTAGATAAGGAAAAGCGTAAAAAGGCTGTCAACCTGAATGTCAATCTCCTGGACCTGAACAATGAGTTCCTGATGGGCTCTCATCTCCCCAACAAGATTGACGAACGCGCCCTGCCAGACCACATCCGCCACTGCTTTTCCATCGATGGCAATTACATACAGATTGCAGGGCTGCATGCAGACTCCCCAGATGACCTGGTTCGTGAAGCTGCGTACAAGATCTTCCTGTACCCCAACCCGGAGCTGCTGCGCTGCTTAGAGGAACTGCTGGCATGCAGGAACGAACTGGCTAAACTGGTGGGCTATGAATCCTATGCACACCGAGCTTTAAAAGGGACTATGGCCAAAACCCCAGAGACTGTCATGGAGTTCCTGGAGCTGCTGTCTGAAAAGCTTTTCGACAGAGCAGGGAAAGATTTTGACATGATGAAAGACATGAAGTTGAAACTGAATCCAAGAAATAAAGAACTAATGCCTTGGGACCATCCTTACTACAGTGGGGTCTTGCGTGCCGAAAGGTATAATATTGAGCCCAGCCTGTACAGTCCGTTCTTTTCCCTGGGGGCCTGCATGGAGGGGTTAAATACCCTGTTCAGCCAGCTCTTGGGCGTCTCCTTTCAGGCCGAACAACCGGAGAAGGGAGAGATCTGGTGTGAAGATGTCCGGAAACTGGCTGTGGTTCATGAATCCGAGGGGCTCTTGGGATACATCTACTGTGACTTCTTCCACAGACCTGACAAACCCCACCAGGACTGCCACTTCACGATCCGGGGGGGCCGTCTTGGAGAGGACGGGCACCTGCCCCACCCCACTAAAAACACCCCCACCCTGCTCACCCCCGGCATGATGGAGAACCTCTTCCATGAGATGGGCCACGCCATGCACTCCATGTTGGGCAGGACCCGCTACCAGCACGTCACTGGAACCCGCTGCTCCACAGATTTTGCTGAAGTGCCTTCTATTCTGATGGAGTATTTTGCAAGTGATTACCGCGTGGTGAACCAGTTTGCACGCCATTATCAGACAGGACAGCCTCTGCCTAAAAGCATGGTGTCCCGCCTGTGTGAGTCTAAGAAAGTCTGTGGGGCAGCAGATATGCAACTGCAGGTTTTCTATGCTGTTTTGGATCAAATTTATCACGGAAAGCCCCTGAATCAGTCGACCACAGAGATCCTGAAAGCGACTCAGGAGAAATTCTATGGGTTGCCGTATGTGCCAAATACAGCCTGGCAGTTAAGATTCAGCCACCTTATTGGATATGGAGCTAAATACTACTCATACCTCATGTCCCGGGCTGTGGCCTCCATGCTGTGGAAACAATGCTTCCAGAAGGACCCCTTTGACAGGGAAATGGGAGAGCGGTATCGCAGAGAGATGCTGGCTCATGGTGGTGCCAAGGAGCCCATGCTCATGGTTAAAGGAATGCTTCAGAAGACTCCTTCCACCGCAGAGTTTGTAGATGCCCTGGTTTCAGATTTGAACCCCGATTTTGAGACCTTCATAATGGATTCCGAATGAAGGGTCCttcttgtttcattgttttgtgtttgtgaggtAATATCACACTTACTGATGACCTACCCTACTGTAACTGAcctttaattttcattcagaATAGGGGATATGTGTTCGTGATCTCATCACATTTGTTCCATGCAGCAGAAGGATCTGGGCATGCTGTTTCCCTCATTGCCCAATTTGCATACAACCCAGTTTGGTTTTTGGTTGGAaggagaaagaaggagaaagaagaaatgaACACTAACCACTGAAGATCAAGAAAATAAttgcttaaaatgaaaatattaccGGGATTGGATATTTATGTTTCACCCTTATCCAGACCGTTACtttatttctttacattatttatagtgGGTTTTTTTTGGGATAATCAATCttaaggtaaaaaaatattataaatgatgGTTTCTGTGGGACCACTGGTATTGCTTTTAAACTTTAGTGCTTGTATCTGTCTGTTCTTGTTAACCAGTTTATTTGAGCCGGTAATTTGGAGATATTAATGACTGCTGTGTAAACTTGGGAATCCTCTATCTACCTCAGTGAAGATGGGCCTACTCCCTATTGAATACACTGAGAACCAGAATATTTTGGCATCCTCATATATTTGGTAGTATAGCATAATTAGAGTTGGCCTGGTAGATGTAAGTTACAGGTTGCACATTTGCAGAGAATTGAAACAAAACGTGGGGTTTCTGTCACTTTATATATAAGAGCCGTTTATAAATGAGATGTTCTAAGGGCCTCTCTAGGATTCCTCTAGGTGCGAGTCTATGACATATCAGAATATATGATCAAATCTAACGCTGGAATGTAACGGAGGTGGAGCAGGCGAAGAACTGGCAGGATCTCAATACTGTGCCCCTGTGTCTTTCACTTAGAGGGAAGGGGAACAGCAGGTCTGACCTCCTTTGTCTAAATACTCATTTCAGTGCATACATATGTTTCAGTTCAAGTCTCGAAAAACGGAACACTGTAAATCTGGGCTCTGTCATTGTGCCAGTATTTTGACTTGGAAAGAAAATATGGTGTCTCTGTTTTGTCTAAGGTTTGActgcagggtttaaaaaaaaaaaaaaaaacctgtgacTCACTGAAGCACTGAACTAACTCAGTTTTGGCCTTTCAGTGACTTTTGCTAATCTGCGCTTACGACCACAAAATCAAGTATTACCTGTAATGTCATCTGTTCCAACAAGTTCACCTGGTGATTATTAAAAGGTGTATGTGCTGTTTAACCAATTGACATTCTCTCTGCCTTCCACTGAGTCCTACAGCATTGATGACAAACCTTTTTATAAcacattgtatttactttttactttttttttttttttt

Function

NR:

description
PREDICTED: mitochondrial intermediate peptidase-like isoform X5

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01410 MIPEP; mitochondrial intermediate peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016210 True 3761 mRNA 0.45 20 12264274 12296060

Neighbor

gene id symbol gene type direction distance location
AMCG00016208 sacs,LOC106612984 coding downstream 27752 12208148 ~ 12236522 (-)
AMCG00016204 LOC104943497 coding downstream 320622 11906076 ~ 11943652 (-)
AMCG00016200 NA coding downstream 378081 11868787 ~ 11886193 (-)
AMCG00016199 pdk3,LOC106578452 coding downstream 397405 11848284 ~ 11866869 (-)
AMCG00016201 NA coding downstream 427853 11818088 ~ 11836421 (-)
AMCG00016209 NA coding upstream 793 12296853 ~ 12320656 (-)
AMCG00016212 NA coding upstream 64515 12360575 ~ 12376528 (-)
AMCG00016217 dscam,LOC106612992 coding upstream 177203 12473263 ~ 12499001 (-)
AMCG00016216 dscam,LOC105030490 coding upstream 218298 12514358 ~ 12531045 (-)
AMCG00016219 LOC106612992,LOC106581126 coding upstream 306824 12602884 ~ 12607201 (-)
G11996 NA non-coding downstream 25260 12238785 ~ 12239014 (-)
G11865 NA non-coding downstream 525675 11738345 ~ 11738599 (-)
G11858 LOC106904821 non-coding downstream 546857 11701591 ~ 11717417 (-)
G11814 NA non-coding downstream 780481 11483562 ~ 11483793 (-)
G11807 NA non-coding downstream 863856 11400207 ~ 11400418 (-)
G12041 NA non-coding upstream 57100 12353160 ~ 12353381 (-)
G12046 NA non-coding upstream 58615 12354675 ~ 12355364 (-)
G12058 NA non-coding upstream 91738 12387798 ~ 12391408 (-)
G12096 NA non-coding upstream 342433 12638493 ~ 12638698 (-)
G12235 NA non-coding upstream 801931 13097991 ~ 13100224 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 316952 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 482727 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1416463 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3436514 8823545 ~ 8827760 (-)
G11326 NA other downstream 4069842 8191546 ~ 8194432 (-)
AMCG00016211 NA other upstream 27101 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 553818 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1247288 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 2124296 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2489138 14785198 ~ 14791969 (-)

Expression


Co-expression Network