AMCG00016211


Basic Information

Item Value
gene id AMCG00016211
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12323161 ~ 12329033 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016211
GAGAAGGGTGCCCGTCAGGTTGGTGCTATAATGAATAGAATGGAGGAGGGGGATCCAATCCGGTTTGAGCTAGTTTTTGTTCCGATGGAATATTAACGTCTAGCTAGACTGCTTTACAAGGTAGTCCTGGTTGGATCTTTTACTGGACATAGTAGTGcattaggtgtttttttttcggCCTCTACGTTAGTGAAAACTTAATTATTTGACATTGTTTGgggtttttttttcataaagaaaaaaagaaagaaaaccagcCATGCCGAAAAGAAACAATaaaaccaCTGAGACTGAAGCAAATGAGccCAAGAGGAGATCGGAACGGTTGCAAAATAAACCTTCTCAACCAAAGGCAGAACCCAAGCCAaagcAAAAGGTGCCGGCAAAACCCAAGAAAGCAAAGGTGAACGATGATGCTAagcaggaggagaagaagaaggaagatGTTCCTGCAGAGAACGGAGAAGCCAAAGCTGATGAG
>TU14856
GTAAAATGAGGTCTTGGACGCgatctctctctcattgtgcCAATACACTGTCAAAGAAACTGCGTTAAAACGACCCTACTTACAAGGGAGGACACAGTCGGCAGGAGCGTTTTTACGAGATTGCACAAAAGGACGGATCCCAGCACCAGAATCCAAGCGCAGCCGTCCGCCATGTTTGCCCCCTTATTGCTGTGCGCGGCTGGGCGCCGAGGACACACGCAGTCACTGCGCTTCACAGCgcagacgcagacgcagacgcagacGCAGCCTGTAGTCTGAAGCATTTAGCCATTCCTGCGCGCAACGCAGATGTCTGTGtgggagaaggggaggggggacaacaacaacatgtgGCTGACTTTCGAGAAGCTTAGTGGCTGCGGCTGTGAGGCAGATCTACAGTTCATCCGAAAAAAACAATAACGGCCACTTATTTAGCATTTTACGTGTAGTAATTCTCCTCCCCCctaaaaaaacagaaggaaaatatcGGGCTGATTGGCGTAGTAACCTACCCACACAGGTGTCttgctttgatttaaaaatgtgttgacgACTCCTAAAGGCCAATCAATGGCAACAGGGGGCGGAGAGAAGGGTGCCCGTCAGGTTGGTGCTATAATGAATAGAATGGAGGAGGGGGATCCAATCCGGTTTGAGCTAGTTTTTGTTCCGATGGAATATTAACGTCTAGCTAGACTGCTTTACAAGGTAGTCCTGGTTGGATCTTTTACTGGACATAGTAGTGcattaggtgtttttttttcggCCTCTACGTTAGTGAAAACTTAATTATTTGACATTGTTTGgggtttttttttcataaagaaaaaaagaaagaaaaccagcCATGCCGAAAAGAAACAATaaaaccaCTGAGACTGAAGCAAATGAGccCAAGAGGAGATCGGAACGGTTGCAAAATAAACCTTCTCAACCAAAGGCAGAACCCAAGCCAaagcAAAAGGTGCCGGCAAAACCCAAGAAAGCAAAGGTGAACGATGATGCTAagcaggaggagaagaagaaggaagatGTTCCTGCAGAGAACGGAGAAGCCAAAGCTGATGAGGCACCAGCTTCAGAAGAATCGGACCAGAAAGATGGAGAGACGGAATAACATCCCTTTACCATGTCTTTTACCAGTGCTCCCTGTACCTCTTTTCTTGTACAATTTCAGAGGAATATTTTTATCTACTATTTTCTAAATGCAAGTTTTTTAGTAGTTTGATtgtagaaacacatttttttaagaagcaaaataaatttgGAAAGGGATTCCACCACATCCCACATTTTTACATCTCTGGAGGAAAAACTATTATCATTGTAAATGtctaggtttttatttttaacggggagggaatggggggggggggcggttgCAGAATGGATTACATGCAATCATGTCGTTTTCAGGATCCTATTGTACAACATGGAGAGAGCTGCCTGAGAGAGTAACATTCCGTAGGCTAAGAGGGACATTTTATGTAACCTATATTtgaatggagaaaaacaaaaaaagaagaattatTTGATGGGAAAGGGGGGGGCAcgcattgttttattgtttataaaaaaaaagttttagaatGTTTGTAAACTGTATTCTATAAATGTTAACTTGTACCCATGCAGTTTTTTGAATCGATCGTTCTGCTTAATAAACCTATTCCCTAGTACTGGAGTTCTCCCTTTCAAAACTGTGCATTGCGTGTGTTGTCTGTTTGTTGGTGATAGCCTTTGCAATAACATTGTATAACTGCTGTGaaagggtttaaaaaataaataaaaaaaatctatatgcGGTGTGTTATGGTACGTTGTAAGGATGGTAAAATGGGATATTTCTGTGTTCTTAGCAAAGCTAATAACTTGACATGCATAACAGTGTTAAACATACTGGTGGTATCTGTTCCTTTGACAGATAATGATAAGCAAATGACTGTACCATCACTTGAGCTGTCAAGTGATCTTACCAGCAGTAGCAATATCTACATGTGGTTTTTAGATAACAAGTACAAATgtacagatttttgttttgttctttgtttataGCTGTGTCTGTGTAATGATGGGTATAAAAGAAccaataaaaagaagaaatggttatacattattttgtggaaGTTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016211 False 481 mRNA 0.43 5 12324822 12328442
TU14856 True 2135 TUCP 0.41 6 12323161 12329033

Neighbor

gene id symbol gene type direction distance location
AMCG00016209 NA coding downstream 2505 12296853 ~ 12320656 (-)
AMCG00016210 LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883 coding downstream 27101 12264274 ~ 12296060 (-)
AMCG00016208 sacs,LOC106612984 coding downstream 86639 12208148 ~ 12236522 (-)
AMCG00016204 LOC104943497 coding downstream 379509 11906076 ~ 11943652 (-)
AMCG00016200 NA coding downstream 436968 11868787 ~ 11886193 (-)
AMCG00016212 NA coding upstream 31542 12360575 ~ 12376528 (-)
AMCG00016217 dscam,LOC106612992 coding upstream 144230 12473263 ~ 12499001 (-)
AMCG00016216 dscam,LOC105030490 coding upstream 185325 12514358 ~ 12531045 (-)
AMCG00016219 LOC106612992,LOC106581126 coding upstream 273851 12602884 ~ 12607201 (-)
AMCG00016227 NA coding upstream 399081 12728114 ~ 12734030 (-)
G11996 NA non-coding downstream 84147 12238785 ~ 12239014 (-)
G11865 NA non-coding downstream 584562 11738345 ~ 11738599 (-)
G11858 LOC106904821 non-coding downstream 605744 11701591 ~ 11717417 (-)
G11814 NA non-coding downstream 839368 11483562 ~ 11483793 (-)
G11807 NA non-coding downstream 922743 11400207 ~ 11400418 (-)
G12041 NA non-coding upstream 24127 12353160 ~ 12353381 (-)
G12046 NA non-coding upstream 25642 12354675 ~ 12355364 (-)
G12058 NA non-coding upstream 58765 12387798 ~ 12391408 (-)
G12096 NA non-coding upstream 309460 12638493 ~ 12638698 (-)
G12235 NA non-coding upstream 768958 13097991 ~ 13100224 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 375839 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 541614 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1475350 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3495401 8823545 ~ 8827760 (-)
G11326 NA other downstream 4128729 8191546 ~ 8194432 (-)
AMCG00016226 NA other upstream 520845 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1214315 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 2091323 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2456165 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 4141578 16470611 ~ 16475170 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002346 NA non-coding NC_007121.7 CM002894.2 39084012 ~ 39087853 (+)
tiger barb (Puntius tetrazona) G155628 NA non-coding NC_056721.1 CM032090.1 7482027 ~ 7482492 (-)