AMCG00016216 (dscam,LOC105030490)


Basic Information

Item Value
gene id AMCG00016216
gene name dscam,LOC105030490
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12514358 ~ 12531045 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016216
TCTAGATTTCTCATTACATCCACGGGAGCCTTGTATATTTTGGATGTACAGAATGAAGACGGATTGTATAACTACCGCTGTATCACACGGCATCGATACACGGGGGAGACCAGGCAAAGCAACAGTGCGCGTCTCTTTGTGTCAGACCCAACAAACTCCGCACCAGTGATCCTCGATGGCTTTGACCGGCGGGACGTGATGGCCTCTCAGCGGGTGGAGCTCCCCTGCAAAGCCTCAGGACATCCCGCCCCAACATACCGCTGGCTGAAGAACAACAGCCCTCTGGAGCCGGACAGCCGCTTCCGGCAAAGCATCACTGGCTTGCTGATTGAGAACGCGCAGTCCGGCGACTCCGGTGACTATGTGTGTGAAGTGTGGAACAACTACGGCAACGCGGACTTCATCGGACACCTGTTGGTGGAGCAGCCCCTGAAGGCAGTGGTCAGCCCTCGCAAGGTGAAGGGCAGCGTGGGAAGCCAGGTGTCCCTGTCATGCAGTGTGAGTGGCACCAAGGACTACGAGCTCTTCTGGTACCGCAACGGTGAGATCATCAACCCGGGCAACAGCGTGAGAATCACCGGGAACAACCGTGAGACGCTGGTGATGGAGGGCATGGCCAAGAGCGATGGTGGGGCCTACCAGTGCTTCGCCAGGAAGGGCAAGATGTCGGCCCAGGACTTCGTACAGGTCATACTAGAAGATGGTACTCCAAAGATCCTGTCTGCCTTCAGTGAGAAGGTGGTGAGCCCCAATGAGGCGGTGTCCCTCATGTGCAACGTAAAGGGGACGCCCCTGCCCACCATCACCTGGACGCTGGACGACGACCACATCCTGAAAGACGGCAGCCATCGCATCAACCAGGTCATCTCCACCGAGGGGGACGTGCTGAGCTACCTAAACATCTCCAACACCCATGTCCGCGACGGGGGCGTCTACCGCTGCACAGCCAACAACTCAGCCGGAGTGGTCACCTACCAGGCTCGAATAAACGTAAGAGggCCTGCCAGCATCCGCCCAATGAAAAACATCACAGCCATTGCCGGGCGGGACACGTACATCCACTGCCGTGTGATTGGCTACCCGTACTACTCCATCAAATGGTACAAGAACTCCAACCTGCTGCCCTTTAACCACCGGCAGCGAGCCTTCGAGAACAACGGCACCCTGAAACTGTCCGACGTGCAGAAGGAGGTGGACGAGGGTGAATACACCTGCAACGTGCTGGTGCAGCCCCAGCTGTCCACCAGCCAGAGTGTCCATGTCACTGTGAAAGTGCCCCCTTTCATCCAACCCTTCGAGTTCCCCCGCTTCTCCATCGGCCAGCGTGTCTTCATCCCTTGCGTGGTTGTCTCCGGCGACCTGCCCATCACCATCACCTGGCAGAAAGACGGGCGGCCAATCCCAGCCAGCCTCGGCGTGACCATTGACAACATCGATTTCACCAGCTCCCTGCGCATCTCCAACCTGTCGCTGATGCACAACGGCAACTACACCTGCATCGCCCGCAACGACGCGGCGGCCGTGGAGCACCAGAGCCAGCTGATCGTGAGGGTGCCTCCAAGGTTTGTGGTTCAGCCCAGCGATCAAGATGGGATTTATGGCAAAGCTGTAATCCTGAACTGCTCTGCTGAAGGTTACCCTGTCCCCACCATCGTGTGGAAATATTCCAAAGGGGCCGGTGTGCCACAGTTCCAGCCCATCGCTCTGAACGGCCGCATCCAGCTGCTGGTGAATGGCTCCCTCCTGATCAAGCATGTCCTGGAGGAGGACAGTGGCTATTACCTGTGCAAGGTCAGCAACGACGTGGGAGCCGACGTCAGCAAGTCCATGTACCTCACCGTAAAA

Function

symbol description
dscam Enables netrin receptor binding activity. Involved in positive regulation of axon extension involved in axon guidance and positive regulation of phosphorylation. Predicted to be located in several cellular components, including dendrite; growth cone; and neuronal cell body. Predicted to be active in axon and plasma membrane.

NR:

description
PREDICTED: Down syndrome cell adhesion molecule isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016216 True 1845 mRNA 0.58 8 12514358 12531045

Neighbor

gene id symbol gene type direction distance location
AMCG00016217 dscam,LOC106612992 coding downstream 15357 12473263 ~ 12499001 (-)
AMCG00016212 NA coding downstream 137830 12360575 ~ 12376528 (-)
AMCG00016209 NA coding downstream 193702 12296853 ~ 12320656 (-)
AMCG00016210 LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883 coding downstream 218298 12264274 ~ 12296060 (-)
AMCG00016208 sacs,LOC106612984 coding downstream 277836 12208148 ~ 12236522 (-)
AMCG00016219 LOC106612992,LOC106581126 coding upstream 71839 12602884 ~ 12607201 (-)
AMCG00016227 NA coding upstream 197069 12728114 ~ 12734030 (-)
AMCG00016223 NA coding upstream 207706 12738751 ~ 12743780 (-)
AMCG00016224 NA coding upstream 216884 12747929 ~ 12777926 (-)
AMCG00016228 acat1,LOC107653722,LOC107583377,LOC107565255,LOC107758700,LOC107679529,LOC107743429 coding upstream 255213 12786258 ~ 12792197 (-)
G12058 NA non-coding downstream 122950 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 158994 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 160977 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 275344 12238785 ~ 12239014 (-)
G11865 NA non-coding downstream 775759 11738345 ~ 11738599 (-)
G12096 NA non-coding upstream 107448 12638493 ~ 12638698 (-)
G12235 NA non-coding upstream 566946 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 1096210 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 1107258 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 1126398 13657443 ~ 13659659 (-)
AMCG00016211 NA other downstream 185325 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 567036 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 732811 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1666547 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3686598 8823545 ~ 8827760 (-)
AMCG00016226 NA other upstream 318833 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1012303 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1889311 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2254153 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3939566 16470611 ~ 16475170 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000197_00079705_00119324 DSCAM, DSCAMA coding CI01000197 null 79705 ~ 119324 (+)