AMCG00016217 (dscam,LOC106612992)


Basic Information

Item Value
gene id AMCG00016217
gene name dscam,LOC106612992
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12473263 ~ 12499001 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016217
TCCCAGCCATGATCACGTCCTACCCCAACACCACCCTGGCCACACAGGGGCAGAAGAAGGAGATGAGCTGCACGGCCCATGGAGAGAAGCCCATCATTGTGCGCTGGGAGAAGGAGGACCGCATCATCAACCCCGAGATGAGCCGCTACATAGTCTCCACCAAGGAGGTGGCAGACGAGGTCATCTCCACCTTACAGATTCTGCCCACAGTCAGAGAGGATTCTGGTTTTTTTTCCTGCCATGCGATCAATTCTTACGGAGAAGACAGAGGCATCATTCAGCTAACAGTGCAAGAGCCCCCCGACCCCCCGGAGGTAGAGATCCGAGAAGTGAAGGACCGCAGCATTGCCCTCCGATGGACAATGGGCTTCGATGGAAACAGCCCCATCACTGGCTATGACATTGAGTGCAAGAACAAATCAGACTCCTGGGATTCAGTCCAGAGAACCAAAGATGTTTCACCTCAGCTGAACCAGGCCACCATCATCGACCTGCACCCATCATCCACCTACAACATTCGCATGTACGCCAAGAACCGCATTGGCAAGAGCGAGGCCAGCAATGAGTTGACCATCACCACCGATGAAGCAGCACCTGATGGTCCCCCCCAGGAGGTGCTGTTGGAACCAGTCTCTTCTCAGAGCATCAAGGTTACTTGGAAGGCTCCCAAGAAGCACCTGCAGAATGGTATGATCCGCGGCTACCAGATTGGCTACCGGGAGTACAGCACTGGCGGCACCTTCCAGTTCAATATCATCAGCATCGAGACAACGGGGGACAGCGAGGTCTACACCCTGGACAACCTGAAGAAGTTCACCCAGTATGGCGTGGTGGTGCACGCCTCCAACCGAGCAGGAACCGGGCCGTCCTCCCAGGAGCTCATCATCACCACACTGGAGGATGTGCCCAGTCGCCCCCCAGAGAACGTCCAGGCCACCGCCACGTCCCCCGAGGCCATCTCTCTGTCGTGGTCCACGCCCCCCAAAGAAGCCCTCAACGGCATCCTGCAGGGCTTCCGTGTCATCTACTGGGCCAACCTGCCCGACGGGGAGCTGGGGGAGATCAGAAATGTCACCACCACACAGCCGTCCCTGGAGTTGGACGGCCTGGAGAAGTATACCAACTATAGCATCCAAGTCCTGGCCTTCACCCGCGCGGGGGATGGGGTGCGCAGCGAGCAGATCTTCACCCGCACCAAAGAGGATGTCCCAGGACCACCAGGGGGTGTGAAAGCTGCTGCCGCCACCAACTCCGTGGTCTTCGTCTCCTGGCTCCCCCCGCTCAAGCTCAATGGCATCATCAGGAAGTACACCGTCTTCTGCTCCAACCCCTACCCCACGGTGATCAGTGAGTTCGAAGCCTCGCCCGATGTGTTTTACTACCGCGTCCCAAACCTCAGCCGGAACCGACAATACAGCATCTGGGTGGTTGCAGTAACAGCAGCCGGCCGCGGCAACGCCAGTGACATCATAACCGTCGAGCCGCTAGCTAAAGCCCCTGCCAGAATCCTGACGTTCAGTGGCACCGTGACAACCCCCTGGATGAGAGACATTGTTCTTCCCTGCAAGGCGGTAGGGGATCCGCCCCCCACTGTGAAATGGCTGAAAGAGAGCAATGGGAGTCCCGCTCCTGTGCTGATCGATGGACGGCGCAGTATCTACAACAACGGGAGCTTTGTCATCCGGACAGTGAAAGCAGAGGATTCTGGGTATTACAGCTGTGTTGCCAGTAACAACTGGGGCTCAGATGAGATTGTGCTTAACCTACAAGTTCAagTTCCACCAGACCAGCCTCGTCTCACGGTGTCCAAGACAACCTCCTCGTCCATCACTCTGTCCTGGATTCCTGGGGACAATGGGGGGAGCTCCATCCGAGGATATATCCTACAGTACTCAGAGGACAACAGCGAGCAGTGGGGCAGCTTTCCCATCAGCCCAAGCGAGAGGTCATATCGCCTGGAGAACCTCAAGTGTGGCACTTGGTATAAGTTCACCCTGACGGCTCAGAATGGCGTGGGCCCGGGGCGCATCAGTGAGATCATCGAGGCCAAGACACACGGCAAAGAACCGCAGTTTTCCAAAGAACAGGAGCTATTTGCCAGCATCAACTCCACACGAGTCAGACTAAATCTGATTGGTTGGAACGATGGTGGCTGTCCAATCACCTCCTTCACTCTGGAGTACCGCCCAGTCGACACCACAGTGTGGACCACGGCCCAGAGGACCTCTCTGTCCAAGAGCTACATCCTGTATGACCTGCAGGAGGCCACGTGGTATGAGCTGCAGATGCGCGTGTGCAACAGCGCGGGGTTCGCCGAGAAGAAGGCAAAATTCGCCACTTTGAACTATGATGGCAGCACCATCCCGCCCCTCGTTAAAACCGTGGACGAGAGCAAAGACAGCTTGTCCACCAATGAGGGCCTGAAGATGATGGTGACCATTTCCTGCATCCTGGTGGGCATCGTGCTGCTCTTCGTGTTGCTGCTTGTGGtccggaggaggaggagggagcagCGGCTGAAAAGACTCCGGGatgcTAAAAGCTTGGCAGAAATGCTAATGAGCAAAAACACCAGGACGTCCGACACACTCAACAAACAGCAGCAGACTCTAAGGATGCACATCGACATACCGAGAGCCCAGCTGCTCATCGAAGAGAGAGACACCATGGAGACAATCGATGACAGGTCCACGGTGCTGCTCACCGATGCGGATTTTGGAGAAACATCGAAACAGAAATCGtccactgtcacacacacagtccactACCAGTCTCTTTCGCAGGCTACTGGGCCACTAGTGGACGTGTCCGATGCCCGACCTGGAACAAATCCCACAGCCCGACGAAACGCCAAGACCGGCCCCACCGCTAGGAACAGGTACGCCAGCCAGTGGACTTTGAATCGGCCGCACCCCACAATATCGACACACACCCTGACCACAGACTGGAGGCTGCCCACCCCTCGTGCAGCCGGCTCTGTCGACAAGGAGAGTGACAGCTACAGCGTCAGCCCATCTCAGGACACAGACCGAGCACGGAGCAGCATGGTGTCAACCGAGAGCGCCTCCTCCACGTACGAGGAGCTGGCCCGCGCCTACGAGCACGCCAAGATGGAGGAGCAGCTGAGACATGCCAAGTTCACCATCACGGAGTGCTTCATCTCCGACACCTCTTCCGAGCAGCTGACTGCAGGGACCAATGAGTACACGGACAGCCTGACGTCCAGCACCCCCTCGGAGTCAGGCATCTGCAGGTTCACCGCCTCGCCGCCCAAACCTCAGGACGGGGGGAGGGTCATGAACATGGCCGTCCCCAAGGCACACAGACCAGGAGGTGACCTAATGCATCTCCCCCCCTATCTCCGAATGGACTTTCTACTAAACCGGGGCATTCCCGCCACCAGCAGAGACCTGGGACTCGGACAGGCCTGTCTGGAACCGCAGAAGAGCCGCACATTGAAGCGCCCTGCCATCCTGGAGCCCACGCCCATGGAGGTGCCCACCAGCAGGGAGGTCCAGCAGTGGCAGCCCGGGACAGCGTCCACACTCCCCCAGCGAGAGGGGGCGGACCTCGGACAGGCCGCCAAAATGAGCAGCTCACAAGAATCGCTGCTGGACTCACGAGGACACCTGAAACAAAGCAGCAACCCGTACGCAAAATCCTACACCTTGGTATAACAAAGAGCATGGACTGGACTACTGAAGAGTTCTAttgaaaacagacacacaccaacaacaaacaacacaaacaaacaaaaagaaaaaacacacaaaaaacagtccgacaaacaaagaaacaaagaaacaaagcgGTTGTACATAATATTTCGAAATTCCAAAAGGAGACTGACAAATgggtacttttcttttttttttcttccttctttctttctgtctttcttcctttctttttttttttacttgagtattcattcattttaaattacaacagATGAAGATTgccaaaataatttatttaaaatgagagaTAAAGAATATtgatataattatgattattataatatggaaaaagaaaatccaaaaaACAGATGAAGAGGAATCTTTTGAGCACTCTACAGAAcattgttgctttattttttgtctgagTGTGAGATAACTGCGGATCGGATGCCTGTCAGATTtttctatacaaaataaaactgaaagaataataataataataataataataataataataataataataataataataataataataataattgaaagagTGAGAAACAAAAATTGTCCAACTGTTCAATCTTCACagattgttatgtttttaaaaacaaatcctatgAATGCATGGGgactgaattgaaaaaaaaaaaatctggaaaaaaaagctGGAAATCTGACTGAGAATTTTGTCACACAGTGAAACAGAATACAATGTGaagagttattattatatataaaaaaaa

Function

symbol description
dscam Enables netrin receptor binding activity. Involved in positive regulation of axon extension involved in axon guidance and positive regulation of phosphorylation. Predicted to be located in several cellular components, including dendrite; growth cone; and neuronal cell body. Predicted to be active in axon and plasma membrane.

NR:

description
PREDICTED: Down syndrome cell adhesion molecule

GO: NA

KEGG:

id description
K06767 DSCAM; Down syndrome cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016217 True 4432 mRNA 0.52 23 12473263 12499001

Neighbor

gene id symbol gene type direction distance location
AMCG00016212 NA coding downstream 96735 12360575 ~ 12376528 (-)
AMCG00016209 NA coding downstream 152607 12296853 ~ 12320656 (-)
AMCG00016210 LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883 coding downstream 177203 12264274 ~ 12296060 (-)
AMCG00016208 sacs,LOC106612984 coding downstream 236741 12208148 ~ 12236522 (-)
AMCG00016204 LOC104943497 coding downstream 529611 11906076 ~ 11943652 (-)
AMCG00016216 dscam,LOC105030490 coding upstream 15357 12514358 ~ 12531045 (-)
AMCG00016219 LOC106612992,LOC106581126 coding upstream 103883 12602884 ~ 12607201 (-)
AMCG00016227 NA coding upstream 229113 12728114 ~ 12734030 (-)
AMCG00016223 NA coding upstream 239750 12738751 ~ 12743780 (-)
AMCG00016224 NA coding upstream 248928 12747929 ~ 12777926 (-)
G12058 NA non-coding downstream 81855 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 117899 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 119882 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 234249 12238785 ~ 12239014 (-)
G11865 NA non-coding downstream 734664 11738345 ~ 11738599 (-)
G12096 NA non-coding upstream 139492 12638493 ~ 12638698 (-)
G12235 NA non-coding upstream 598990 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 1128254 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 1139302 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 1158442 13657443 ~ 13659659 (-)
AMCG00016211 NA other downstream 144230 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 525941 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 691716 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1625452 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3645503 8823545 ~ 8827760 (-)
AMCG00016226 NA other upstream 350877 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1044347 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1921355 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2286197 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3971610 16470611 ~ 16475170 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002345 dscama coding NC_007121.7 CM002894.2 38775408 ~ 38974445 (+)
grasscarp (Ctenopharyngodon idella) CI01000197_00125913_00150004 DSCAM, DSCAMA coding CI01000197 null 125650 ~ 150203 (+)