AMCG00016222


Basic Information

Item Value
gene id AMCG00016222
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12819590 ~ 12842680 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016222
ATGTTGAGAGCCTCCAGCCCGTCGCTGGCCGAACAGCTGCGGAAGATGCAGGCATTTCTGGGGCTCAGAGTTACTGGGAAGCTGGATTATAGCACAATGGAGATGATGCGAGCCCCCCGCTGTGGAGTCCCTGATGTGGAAAACTACCGGCTCTTCCCTGGGACGCCCAAGTGGAAATCCAACATCATAACTTACAGGATAGCAAAGTACACCTCTACCCTGCCAAGAGCTGAAGTGGATCATGCCATCGACATGGGCCTGAAAGCCTGGAGCAGCGTGACGcctctgcattttcaaaaaatcCAGAGAGGGGAGGCCGATATCATGATCTCCTTTGAAGTCGGAGCTCACGGAGACGCCTACCCTTTTGATGGACCCCGGGGGACTCTGGCTCATGCCTTCGCCCCAGCCGAGGGCCTGGGAGGAGACACGCACTTCGATGATGAGGAAAAATGGACCATGGGAACCAATGGATTTAACCTCTTCACAGTGGCTGCCCACGAGTTGGGCCACGCTCTGGGTCTGGCACACTCCAGTGACCCCTCAGCGCTGATGTTCCCAACTTACAAATACCAGGATGCCCGAGGCTTCACTCTACCCAGCGATGATGTGAAAGGCATTCAGGCTTTGTATGgtGCTACCACCAGAATAAACGAGAGACACGAGAAGCATGAGAAGGAGGACAATCACATGCCAGCCCCCCCATCTCCCAGCTGGCCAGTTAATCGCAGCCCGAACATGTGTGAGAATGACATGACCTTTGATGCTGTAACAGTTGTTGGAAATGAGTTGCTGTTCTTCAAGGAAGGCTATATGTGGCGGAGGCAGTCCCAGCTGACAGATGTCCGTCCCAGCTACATTCGCAGTTCCTTCCCTCAGCTGTTCACCAATGTCGATGCTGCTTATGAAGTCCCAGAGAAGGGGACTGCATATCTCTTTAAAGGGTCAAATTATTGGACATCAAGGGGTTTACAGACGATCGGAGGACCAAGATCCATCACAGACTTTGGTCTCCCAAGCAGAGTGAGACATGTGGATGCTGCTGTTTATCTCAAAGACACGAAGCAGACACTGTTCTTTGtgggaaatgatttatataGTTTCAATCAAGCAAATTCACAATTGGAGGAAGGCTATCCAAAGAAAATTGAAGAGGAGTTTTCAGGAATCAGGGGAAAAGTTGACGCTGCTGTTGAAGTGAATGGATTTCTGTACCTATTCTCAGGGCCCAATGCCTACAAATTGGACAGCGAGCGAGAGGACGTTATCCGCATTGAATTCCTGCAGCGTTTCTACAATCTGGAAGAGGGGCCTAGTAATCGTAGCAAGAGGAGCAGCGTGTCTTTTGCCTCCAAAGTGAGAGAGATGCAGGCGTTTTTTGGCCTCAATGTCACCGGTGCCCTCGATTCACAAACCATCAAAATCATGAAGACCCCGCGGTGTGGTCTTCCAGACGTACAGAACTACAGTCCACATGGCCAGGTCACAAGGTGGAAAAAGAACATCTTAACATATAGCATTGGACGGTACACCGAGGACTTGCCCACAGATACAGTGGATTCCCTTATCACTTCGGCCCTGCGAGTCTGGAGCGTTGTTAGCCCCTTGATTTTTCTCAGATCAGACTCTGGCAACGCAGATATCATGATTGAGTTTGGAACTTATGAGCACGGAGATTCCTTCCCATTCGATGGTCCACAAGGGACGCTGGCCCACGCATTCGGGCCGGGAGAAGGTATCGGGGGGGACACTCACTTCGATGATGATGAAAAGTGGACAGATGGATCAGAAGGGTTCAACTTGTTCCTAGTGGCGGCACATGAATTTGGCCATGCTTTGGGCTTAAGACATTCCAGACTTCCAGAATCTCTGATGTACCCCACGTACAAGATACGAAACCCTGCCAACCTGCTCTCCAGTGAAGACATACGACAGCTCCAGGCTCTGTATGGACCCAAAAGACGTATCCAAATGTATTATCCAAGATATgactggagtttttttttctctccacggCGTCACAAATCTGCTTTTCCAATTCAAGTTCAGGACAAATGTAACCCTGACATGTCATTTGATGCTGTAGCGAATTTGGGACAAGAcatcttgttttttaaagacagGTATACATGGATCAAACATGGGCAGCAACCGGATTTAAAAGAAAGACCCATCAATACCTTCATGTCAAACACTTACTCTGGCATTGATGCTGCATACTCTGTTCCCAAGCAATCATCCTTGTACCTGTTTAAAGGATCCAGCTATTGGACTGTGAAGCTGTCTCAAATGAAAAGCCGACCACAACCCATCTCTAAACTGGGATTCCCAAAGCAGCTGAGAAAGATTGATGCCGCTGTACACTTAAGCAAGACTGGAAACACACTCTTCTTTGCCAATGACAAGTACTGGAGttacaaTGAAACTACCAGAGCCATGGAAGACTTTTATCCCAGAAACATCATTGATGACTTCCCAGGGATTAACACCAAAATAAATGCGACCAGCGAGATAGAAGGCAAGTATCTTGTTCTAGAACAAGTTTCATCTACTTCTTTTGTGGAAGGGAAGTACATAAATACGACAATATCAAGAAGCAAGTGGTTCAGAATGTCGCCTTGGATTTCACTGCTATACCTACTGGGGAATTTTCAACTCTCATGGACTTTGCCTATTGCAGCTAAAGCAGGACTGCAGCAAGATGATGTGCTATATGCTGAGGAGTATCTAAAGAGTTTCTACCACCTGAAGGAAGGCAGAGGTACTCGTAGCAGACGGGAGATGCCAGCTATGGAGGCCAAGATCCGGGAGATGCAAGAGTTCTTTGGACTGGAGGTGACAGGGGGGCTGAACCCACAGACTGTGAGTGTCATGAGGAGAGCGCGCTGTGGGGTGTCCGACGCCGAGAACTACAGCTTCTACCCAGAAAAATCCAAATGGAAGAACCACACCATTACATACAGGGTTGTGAAATACACCTCAGATCTTAAGAAGGAAGATGTGGACAAGTCTTTCCAATGGGCCCTAAAGATCTGGAGTGATGTGGCTCCACTAAAATTTGTGAAAGTCGATCAGGGAGAGGCTGACATGATGATCACCTTCGGATCAAAAGCTCACGGGGATTTTTTTCCCTTCGATGGACCCAAAGGAGTGCTGGCTCATGCCTTTGAACCCAGTGAAGGCATTGGAGGGGATACGCACTTTGACGATGATGAAATATGGTCAATGGGAAATAAAAAGCCagGCTACAACTTGTTCACAGTGGCGGCTCATGAGTTTGGTCACGCCCTGGGACTCTCCCATTCCAAAGACCCCTCTGCTCTGATGTACCCAAACTACAAGTACTACAACGTATCCACATACACCCTGTCCAGGGATGACCGCCTGGGCATACAAGAGCTATATGGCACTACCAGCGGCCGCACACAGGAAGTGCTGACTGTTCCCGAGAAGTGTGACCCCAACCTCTCCTTCGATGCCGTTGCTGCCATCGGAcgagaaatatatttttttaaaaacagGTGTAGGTACATGCATCGTCTGTGTGTCTCATCCCTACCCATTGTGTGCCCCTCACTGTGCAGTTATATGTGGATACGCACGACGTGGTGGAGGTTCTGGAGCAAGATTAGGGAAGGCTCCATCACTACTTTCATACCAAGCATCAGTTCTCCCATTGACGCTGCTTATGACATCCCTGCCAAAGGAGTGGCATATATTTTTACTGGTCCAAAATATTGGCTTGTTCAGCAGTTAAATATGAAAAGCTACTCCAGTTCCATCTATAACTTCGGATTTCCATCATCAGTAAAGAAAGTAGACGCAGCTGTCCATGTCAAAGACCTTGGAAAAACCTATTTCTTTGTAGGCGACGTGTATTACAGGTATGATGAAGCCAGGAGTAAAATGGATCCTGGATTCCCAAGGAAAATAAGAAGTGACTGGCCTGGGATTGGTAGCAAAATTGACTCAGCCTTCGAACTGGCAGGCTACATTCACTTCTTCTCTGGATCCAAAGCTTACAAGTACAGCTACAGGCACAAACGTTTGTTGAACTCTGTCAAGGTGAACTCATGGCTGGGATGCTAG

Function

GO: NA

KEGG:

id description
K07999 MMP20; matrix metalloproteinase-20 (enamelysin)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016222 True 4089 mRNA 0.48 28 12819590 12842680

Neighbor

gene id symbol gene type direction distance location
AMCG00016225 NA coding downstream 13706 12793808 ~ 12805884 (-)
AMCG00016228 acat1,LOC107653722,LOC107583377,LOC107565255,LOC107758700,LOC107679529,LOC107743429 coding downstream 27393 12786258 ~ 12792197 (-)
AMCG00016224 NA coding downstream 41664 12747929 ~ 12777926 (-)
AMCG00016223 NA coding downstream 75810 12738751 ~ 12743780 (-)
AMCG00016227 NA coding downstream 85560 12728114 ~ 12734030 (-)
AMCG00016236 NA coding upstream 48298 12890978 ~ 12898310 (-)
AMCG00016232 NA coding upstream 64227 12906907 ~ 12932297 (-)
AMCG00016235 NA coding upstream 97442 12940122 ~ 12949580 (-)
AMCG00016233 serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107743426 coding upstream 135596 12978276 ~ 12983296 (-)
AMCG00016234 stch,hspa13,LOC106613070 coding upstream 218061 13060741 ~ 13062765 (-)
G12096 NA non-coding downstream 180892 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 428182 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 464226 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 466209 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 580576 12238785 ~ 12239014 (-)
G12235 NA non-coding upstream 255311 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 784575 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 795623 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 814763 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 1584945 14427625 ~ 14428817 (-)
AMCG00016211 NA other downstream 490557 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 872268 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1038043 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1971779 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3991830 8823545 ~ 8827760 (-)
AMCG00016226 NA other upstream 7198 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 700668 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1577676 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1942518 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3627931 16470611 ~ 16475170 (-)

Expression


Co-expression Network