AMCG00016223


Basic Information

Item Value
gene id AMCG00016223
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12738751 ~ 12743780 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016223
tgctgcagctgtgtgtCCTGTGGCGGTGAACGGGTGTGTGTCAGTTCCTCGCAGTGGTGCGACAGTGTGCAGGACTGTGTGGGGGGAGAGGATGAGTCCAATTGCTTTCGGCTTTATGGTTCCAGGTTTGTCCTGCAGGCCTATTCATCCAAAAGCCGGTCATGGAAAGCTGTCTGCTCCGACGGCTGGAACACGAGCCTTGGAAAAACTGCTTGTGAACAGATAGGATATAGCAGTGATACTTATTTCAAATCGGAATATGTGAACCAGAATGCTGGTGGCTCTGTTGGATACATGAAGCTAAACCCTGATTTGAGCTCCTCTGGGAAGGCTCTGCATAAGCAGTTGTCCAGCAGCGACTCTTGCTCAACGAATTCAGTTGTCACACTGCGTTGCATTGACTGTGGGACCAGGGCTGCCCCGTCCACACGCATTGTTGGTGGGACACAAGCTACCCTGGGCCAGTGGCCGTGGCAGGTCAGCCTTCACGTTGAAAGCCGGCATCTCTGTGGTGGGTCCATCATCACCCCCTACTGGATTGTGACGGCAGCGCACTGTGTGGAAAAGTTTTCTGACCCTGGATTGTGGACTGTTTATGCAGGACAGCTCACCCAGACAGAAATGAGTTGGCGCTCTGGATACTCTGTGTCCCGTATCATCGCGAACAActacaacagaaacacaaagaataACGACATCGCTCTAATGAAGCTGAGTACCCCACTTATATTCTCAAGAACAGTGAGTCCAGTGTGTTTGCCTAACGTTGGTCTCAGTATCGACCCGCCTCGGTCTTGCTGGATATCTGGCTGGGGAGCGACTCAACAAGGAGGTACAAGAATAGCTGTAGCCTCAGTGGCCTTGTTATATGTCACTGgataCTCTTCTGATATATTGATGCAAGCACCGGTCTCACTAATAGACAGGGTCACCTGTAATGCACCCAGGGTGTACTCTGGGCAGATAACAAACACCATGATCTGTGCCGGCTATCTACAAGGGGGAATCGACTCCTGTCAGGGAGATAGTGGAGGACCTTTAGTCACTGAAGAGAGCTCGCTCTGGTGGCTGGTGGGAGACACTAGCTGGGGTGATGGCTGTGCTATGAGGAACAAACCCGGAGTGTATGGCAATATGACTGTGTTCCTGGACTGGATCTATCAACAGATG

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K09633 TMPRSS2; transmembrane protease serine 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016223 True 1170 mRNA 0.51 9 12738751 12743780

Neighbor

gene id symbol gene type direction distance location
AMCG00016227 NA coding downstream 4721 12728114 ~ 12734030 (-)
AMCG00016219 LOC106612992,LOC106581126 coding downstream 131550 12602884 ~ 12607201 (-)
AMCG00016216 dscam,LOC105030490 coding downstream 207706 12514358 ~ 12531045 (-)
AMCG00016217 dscam,LOC106612992 coding downstream 239750 12473263 ~ 12499001 (-)
AMCG00016212 NA coding downstream 362223 12360575 ~ 12376528 (-)
AMCG00016224 NA coding upstream 4149 12747929 ~ 12777926 (-)
AMCG00016228 acat1,LOC107653722,LOC107583377,LOC107565255,LOC107758700,LOC107679529,LOC107743429 coding upstream 42478 12786258 ~ 12792197 (-)
AMCG00016225 NA coding upstream 50028 12793808 ~ 12805884 (-)
AMCG00016222 NA coding upstream 75810 12819590 ~ 12842680 (-)
AMCG00016236 NA coding upstream 147198 12890978 ~ 12898310 (-)
G12096 NA non-coding downstream 100053 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 347343 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 383387 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 385370 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 499737 12238785 ~ 12239014 (-)
G12235 NA non-coding upstream 354211 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 883475 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 894523 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 913663 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 1683845 14427625 ~ 14428817 (-)
AMCG00016211 NA other downstream 409718 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 791429 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 957204 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1890940 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3910991 8823545 ~ 8827760 (-)
AMCG00016226 NA other upstream 106098 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 799568 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1676576 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2041418 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3726831 16470611 ~ 16475170 (-)

Expression


Co-expression Network