AMCG00016225


Basic Information

Item Value
gene id AMCG00016225
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12793808 ~ 12805884 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016225
CATGGAGACTTTTATCCCTTTGATGGACCCAGTGGAACGCTAGCTCATGCCTTCTCTCCTGGAAGTGATATTGGAGGGGATGCTCACTTTGATGAAGATGAAAGTTGGACAACGACATCGAAAAATTTCAATTTGTTCCTCGTTGCTGCCCATGAATTCGGACACGCTATGGGGCTCGACCACTCCAATGATCCCACCGCTCTGATGTATCCCACATACCAGTATGTCAACACAGACGGATACACGCTTCCCGCTGATGACGTCAAAGGAATCCAGTCTATATATGGAAAACCTGTCAACTCTCCAGCGACTACAGCCAAGCCATCAGTGGGAACATCCCCCAAGAATACTCCAACTTCCAGGCCTGGCAGCTGTGACACAGATTTGACCTTGGATGCTGTGGCTTTTTATAATAGTGACCTGCTTTTCTTCAAGGGCAGTGACATTTGGCGTAAAAAGAGAGATGGGACAGTAACCAAGGAGTCCATCAAAGCTAGCTTGCCCGGCCGGCCAACAGATGTTGATGCTGCTTATGACTTTGGTGGAGTCACCTTTGTCATAAAAAatacaaatgtatataatagcATCCCTTTTGCGAGAAAACTATTACGGCTCAGCATTTATTCAATGGGATTTCCACGAAATGTGACAAAAATTGACGCAGCCGTCCACATTgcacagacaggaaggacactGTTCTTTGTGGGGGATACATACTACAGcttCAATCCACTTAAGTGGAGACTTGAGCCCAGTCAGTACATTCAAGATGCCTTCCCAGGAATAGAACCAAAGATTGATGCTGCCTTTCAAATAGCAGGAAAGACCTACTTCTCCAATGGACCCTTCCTGATTCTCAACTACACACCACTTATCCATAAGAGACTGGTTGATATCACAGTCAAGCTGGCTTTCAGGCTGTGGAGCAGAGTAACTCCTCTGAAATTCGTTCCCATTCGCCGAGGGGAAGCAGACATCATGATTAAATTTGCCTCTTGGAGTCATGGTGACGGCTCTCCTTTTGACGGGCCTGGCGGAGAACTCGCACACGCCTTCGCCCCTGGCAGCGGCATACTAGGGGATGCCCACTTTGACAACGACGAAAAGTGGACGCTTGGGCAGAATGGTAAGATTGAATATCTCTCCCGGTTCTTTGTGGATGGGAGAAAGAGTCCACCTGTAGGCAGAAGTAGGGTCTCTGTGAAGCCCTTTAAGACAACCCTAGAGCTGATGCAAGAGTTCTTCGGACTGGAGGTCACTGGACAACTAGATAGCAACACACTGGAGGTGATGAACAAACCCCGATGTGGAGTTCCTGATATCAGCAGATACAGCCACTTTCAAGGGAAGTTAAAGTGGGAGAAAACTCCTATTACTTACAGTACTTGCTTCAATGTGCTTCCAGGGGTGAACCTGCTCCTAGTGGCGGCCCATGAGTTTGGCCACGCGCTGGGACTGGACCACTCCAGGGACCGCAGTGCTCTGATGTACCCGACCTACCAGTATGTGGACACCAGAGGGTACCAGCTTCCAAAAGATGACAGGCTTGGCGTCCAAGCTTTATATGGTTCGCGGACTTCAACTAACAAGCCTGATCCTAAACCACAGCCAGAACCACAACCAGAACCGCGacccaaacccaaacccaaacccaaTCCTGACCCCGTGCCCAGGCCTCCAGAACAATGTGACCGCAACCTGGCATTTGACGCTGCTACTTCAATGGGAAATGAGCTTTATTTCTTCAAAGACAGGCGAGTGAAGCTGTTCTTCTGGACAAAGAGCCTATCTGCCATTAAGTTAATGTCTATAACGTCCATCTGGCCTCAGATCAGTTCTGTAGATGCTGCATATGATATCCCAGAAAGCAGAACtgcatattttttcaaagGTGATCGTTACTGGGCGGTCAGTGGGCACAAGACGCTGCAGAACTACCCCAGGCGGATATCTGAGTTTGGATTCCCTCGATCAGTAATGAAAATCGACTCTGCAGTGCACATCAAGGAGAGCAGGAGAACACTGTTCTTTGTGGGAGACAAATACTGGATGTTCAATGAGACAAGGAAGAAAATGGACCGAAGGCGTCCCAGAAACATCCGGACAGATTTCCCAGGAATTGGTTCCAAAGTTGATGCTGCCTTTGAGAACTATGGTTACCTGTACTTCTCAGATGGGCCCAGACAGACCAAGTATAACTACCAGACAAGAACAGTGTCTCGGGTTTTGCTAAACTACAGATGGCTGGATTGCTAC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016225 True 2256 mRNA 0.48 16 12793808 12805884

Neighbor

gene id symbol gene type direction distance location
AMCG00016228 acat1,LOC107653722,LOC107583377,LOC107565255,LOC107758700,LOC107679529,LOC107743429 coding downstream 1611 12786258 ~ 12792197 (-)
AMCG00016224 NA coding downstream 15882 12747929 ~ 12777926 (-)
AMCG00016223 NA coding downstream 50028 12738751 ~ 12743780 (-)
AMCG00016227 NA coding downstream 59778 12728114 ~ 12734030 (-)
AMCG00016219 LOC106612992,LOC106581126 coding downstream 186607 12602884 ~ 12607201 (-)
AMCG00016222 NA coding upstream 13706 12819590 ~ 12842680 (-)
AMCG00016236 NA coding upstream 85094 12890978 ~ 12898310 (-)
AMCG00016232 NA coding upstream 101023 12906907 ~ 12932297 (-)
AMCG00016235 NA coding upstream 134238 12940122 ~ 12949580 (-)
AMCG00016233 serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107743426 coding upstream 172392 12978276 ~ 12983296 (-)
G12096 NA non-coding downstream 155110 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 402400 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 438444 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 440427 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 554794 12238785 ~ 12239014 (-)
G12235 NA non-coding upstream 292107 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 821371 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 832419 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 851559 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 1621741 14427625 ~ 14428817 (-)
AMCG00016211 NA other downstream 464775 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 846486 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1012261 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1945997 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3966048 8823545 ~ 8827760 (-)
AMCG00016226 NA other upstream 43994 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 737464 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1614472 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1979314 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3664727 16470611 ~ 16475170 (-)

Expression


Co-expression Network