AMCG00016226


Basic Information

Item Value
gene id AMCG00016226
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12849878 ~ 12870560 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016226
ATGTACCCAATCTACAGCTATTCTGATCCCAGGAGTTACTCCCTCCCTTACGATGATGTCAAAGGAATACAGTCCCTCTATGGCTCAAACACGGATGTTGACGAGAACCCCAACCCAAAgcctccccccaccacccccaacGCCTGCGATACTAACCTGGTCTTGGATGCAGCCACAACCCTGCGTGGCGAGAAGATGTTCTTTAAAGACAGGTTCTTCTGGCGCAATACTGGTCAGAATACACCGGTGGAGCAGTACACCATCACAAGCTTCTGGCCTGAACTGCCCAGCAATATTGAGGCTGCTTATGAGAATCCATCAAAGGACCTAGTGTTCCTCTTTAAAGGGAGTCAGTACTGGGCTCTGTATGGGTTTGATATTAAGGAAGGCTATCCTCGACACATTTCTAGCCTGGGCCTGCCAAGGAATGTCAAGAAGATTGATGCTGCCGTTTACGATGAAGACTCGGGCAAAACCCTCTTTTTTGTTGGTGAACAGTTCTACAGTTACGATGAAGACAAGAGAAAACTAGACGAAGGCTATCCAAAACGGATTGTGGACTCTTATCTGAAAAGGTTCTATGACTACAAAACCTCAGAAGGACCCACTTTCAAACGACTGTTGAATCCCATGGTTGAGAAGGTGAAAGAGATGCAGAAGTTCTTTGGTCTGACAGTGACAGGAGGTCTTGACTCCGAAACAGTAGAGGTGATGAAAAAGCCGCGTTGTGGAGTCCCTGATGTGGCCAGATATTCCACATTCCCCGGAGATTTGAAGTGGCCGAGAAACAGTTTGACCTACagGGTCGTGAACTACACCCCCGACATGAGTTTTGCCCTCCCTCAGGACGATGTCAGAGGAATACAGTCCCTCTACGGTCCCAACCCTGAGGATGACCCCAAGGAACCCAAACCAAAGCCTCCCCCGACTACCCCTGACGCTTGTGATGCCAACCTTGTTTTGGATGCAACTACAACCATGCGTGGAGAGACGTTGATTTTCAAAGacagGTTCTTCTGGCGTAGTCATCCTCAGTTCACTAGTGTGCATCAGTACACCATCAGCTCCTTCTGGCCCACACTGCCGTCCAGCATAGACGCTGCCTATGAGAATCCTCACACCGACAGAGTCTTTCTGTTCAAAGGAGACAAATTCTGGACTCTCTCTGGCTTTGACATCCTGGGTGCACCGCAGAGTATCTCACGCTTGGGATTTCCCACCAGTGTGAGGCAAATTGATGCTGCTGTTTATGACAAGGACAGCAGCAAAACCCTCTTCTTTGTCAAGAACAAATACTACAGTTATAACGAGGCCAGGAAACAAATGGACAGAGGATTCCCCAGATCATTAGCGAGGGACTTCCCTGGAATTGGAAAGAAGATCGATGCTGCCTTCCAAAAGCAAGGATTTACATATCTGCTGAGCGGTCCCAGAATGATTGAATACAGCATCAGAACTAAAAGAATGTTCCGGATCTTAAAAAGCAACTACTTGCTGGATTACATGTGA
>TU15027
TTCAGTGGCAGTATACACCGGCCGACAGGTACTcgagagaagatgaggtctctCCACGTTCTGGTGTTCCTGAGCCTGGCGGCCGCAGTCTGCTCAGCGCCGTTGTTGCCGCCTGCCGCCGATGAAACTGATATGGAGGTGGCGGAGTCTTACCTGACGAAATTCTACAACTTAACTGTTGCTGACGGGCCCATATATAAGCGAAAGTTTAACCCCGAGCTGATTAAGAAGGTGAAAGAGATGCAGAAGTTCTACGGTCTGGCAGTGACAGGGATTGTGGACTCAGATACAGTGGCGGTGATGAAGAAGCCACGCTGTGGAGTCGTTGACATGGACCGATACAGCACATTCCCAGGGAATTTGAAGTGGCCAAGAAACAGTTTGACCTAcagGGTCGTGAACTACACCCCCGACATGTCTGTCTCCGAAGT
>TU15028
TTCAGTGGCAGTATACACCGGCCGACAGGTACTcgagagaagatgaggtctctCCACGTTCTGGTGTTCCTGAGCCTGGCGGCCGCAGTCTGCTCAGCGCCGTTGTTGCCGCCTGCCGCCGATGAAACTGATATGGAGGTGGCGGAGTCTTACCTGACGAAATTCTACAACTTAACTGTTGCTGACGGGCCCATATATAAGCGAAAGTTTAACCCCGAGCTGATTAAGAAGGTGAAAGAGATGCAGAAGTTCTACGGTCTGGCAGTGACAGGGATTGTGGACTCAGATACAGTGGCGGTGATGAAGAAGCCACGCTGTGGAGTCGTTGACATGGACCGATACAGCACATTCCCAGGGAATTTGAAGTGGCCAAGAAACAGTTTGACCTAcagGGTCGTGAACTACACCCCCGACATGTCTGTCTCCGAAGT
>TU15029
TCGGACAAAGGTACAGTCGGTAATATGAAGACAATGGGCTTTAAGTCACTAGTGCTGATGGTCCTTGCTTGTGCAGCCTGGGCCGCTCCGAATGCACCAGTTGCCAACAAAGACCCCAAAGACTTTGCAGAGTCTTATCTGAAAAGGTTCTATGACTACAAAACCTCAGAAGGACCCACTTTCAAACGACTGTTGAATCCCATGGTTGAGAAGGTGAAAGAGATGCAGAAGTTCTTTGGTCTGACAGTGACAGGAGGTCTTGACTCCGAAACAGTAGAGGTGATGAAAAAGCCGCGTTGTGGAGTCCCTGATGTGGCCAGATATTCCACATTCCCCGGAGATTTGAAGTGGCCGAGAAACAGTTTGACCTACagGGTCGTGAACTACACCCCCGACATGTCTGTCTCCGAAGT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016226 True 1509 mRNA 0.48 14 12849878 12868822
TU15027 False 431 TUCP 0.43 3 12869840 12870560
TU15028 False 431 TUCP 0.34 3 12862099 12870560
TU15029 False 413 TUCP 0.34 3 12862099 12862870

Neighbor

gene id symbol gene type direction distance location
AMCG00016222 NA coding downstream 7198 12819590 ~ 12842680 (-)
AMCG00016225 NA coding downstream 43994 12793808 ~ 12805884 (-)
AMCG00016228 acat1,LOC107653722,LOC107583377,LOC107565255,LOC107758700,LOC107679529,LOC107743429 coding downstream 57681 12786258 ~ 12792197 (-)
AMCG00016224 NA coding downstream 71952 12747929 ~ 12777926 (-)
AMCG00016223 NA coding downstream 106098 12738751 ~ 12743780 (-)
AMCG00016236 NA coding upstream 20418 12890978 ~ 12898310 (-)
AMCG00016232 NA coding upstream 36347 12906907 ~ 12932297 (-)
AMCG00016235 NA coding upstream 69562 12940122 ~ 12949580 (-)
AMCG00016233 serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107743426 coding upstream 107716 12978276 ~ 12983296 (-)
AMCG00016234 stch,hspa13,LOC106613070 coding upstream 190181 13060741 ~ 13062765 (-)
G12096 NA non-coding downstream 211180 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 458470 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 494514 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 496497 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 610864 12238785 ~ 12239014 (-)
G12235 NA non-coding upstream 227431 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 756695 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 767743 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 786883 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 1557065 14427625 ~ 14428817 (-)
AMCG00016211 NA other downstream 520845 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 902556 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1068331 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 2002067 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 4022118 8823545 ~ 8827760 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 672788 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1549796 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1914638 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3600051 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 3987981 16858541 ~ 16861179 (-)

Expression


Co-expression Network