AMCG00016228 (acat1,LOC107653722,LOC107583377,LOC107565255,LOC107758700,LOC107679529,LOC107743429)


Basic Information

Item Value
gene id AMCG00016228
gene name acat1,LOC107653722,LOC107583377,LOC107565255,LOC107758700,LOC107679529,LOC107743429
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12786258 ~ 12792197 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016228
CGCAGACACACCCCCTGTCCTGATTGGCTGGGGCTGCGGGGCTGCGGGGGTTGGCCGGCGAGCCGCTGAAGGTGAAACAGGTCCGCTGTGTGTATAAAAGTTGTGCAGGTTTGTCCATCGTTATGTCATCCAGGGGACTTTTCGCCATGAATACGCAGCTGTGCAGGAGGCTACTGGCTCATCAATATTTGTCAAGAACCTATGCATCTCGTCCAAGTTTAAATGAGGTGGTCATAGTCAGTGCTGTGCGGACCCCAATGGGTTCGTATAAAGGCAGCCTGTCCACAGTGCCAGCCACAAAACTGGGCTCCATTGCGATCAAGGGAGCGGTCGAACAAGCAGGGATCCCGGTGGAGGAGGTCAAGGAGGTGTACATGGGCAACGTGCTGCAGGCCGGCGAGGGACAGGCTCCCACCAGACAGGCTCTCCTGGGTGCAGggcTGCCAATCTGTACCCCGGCCACCACAGTGAACAAAGTCTGTGCTTCTGGCATGAAATCCATCATGTTGGCAGCCCAGAGTCTGATGTGTGGACACCAGGATGTCATGGTGGCGGGCGGGATGGAGAGCATGTCCAACGTCCCTTACATCATGGCGAGAGAAACGCCCCCCTATGGCGGAGTAAAGATGGAGGACCTCATCGTGAAGGACGGCCTGACTGATGTCTACAACAAGTTCCACATGGGCAACTGTGCTGAAAACACGGCCAAGAAGAGCAGCATTTCACGAGAGGAGCAGGACGCCTTTGCCATTAACTCCTATACCCGGAGCAGAGCCGCCTGGGAGACCGGGGTCATCGCCAAGGAAATCGTTCCTGTTAACATCCCACAGAAAGGTAAACCAGACATCGTGGTTAAGGAGGACGAGGAATACAGACGGGTGGATTTCTCCAAGGTGCCTAAACTGAAGACCGTCTTCCAGAAAGAGAATGGTACTGTGACTGCTGCCAATGCCAGCACGCTAAATGACGGCGCAGCTGCTTTAGTCCTGATGACGGCTGATGCAGCCAAGAGACTCAATGTCACTCCCCTGGCAAAGATCATCGCATTTGCAGATGCAGCTGTTGATCCCATCGATTTCCCAATCGCCCCTGCGTATGCTGTACCCAAGatcctTAAAGCCGCAGGTCTGAAGATGGAAGACATTGCCATGTGGGAGATCAACGAAGCTTTCAGTGTGGTGGTCCTGGCCAACATCAAGATGCTGAATATTGACCCTAACAAAGTCAACATCAACGGAGGAGCCGTCTCCCTGGGCCACCCCATTGGGATGTCTGGAGCCCGAAttgtcggtcacatggtgcaCAATCTACAGTCGGGGCAGTATGGACTGGCAGGCATCTGCAATGGTGGCGGAGGAGCCTCTTCAATCCTCATCCAGAGATGCTGAAGCAGCCATTCAGTGAAATGGATTTGCTGCAACTTTGATCTACCTGTTCCGAATGTACTAAAATCTGgctttataaactatttatttgtcCAAAAAAAGGTCAAACACTCTTGAAACTACCTGCATACATTAAGTTTTATTTCTCACGTTCAATCCAGTTACGGTGACTCCATGAAGTCACTCCAGCTCTGTATGACATTATAAACAGTTGTATTCCAATAAAGCAGACTAACTTCATAACCTTTTGAAGCAAAATATGACTGAACAATGGAACCACCTGGtgtgttatttctgttttttgtcttttattcaGCTTTGTTGAAAAATACTCCTTAACAGGGAATATTCCTCCTGAATAATATTCAGGTCCAGTTGGTGgcagtttgttttgcaaataacAAACCCATCACCTTTAGCTTTGAAAGAAGAGGAAAGCTTTTGGTCTCATTTTGCTTGTAGATTCTTGATGCAACACCAAACTCAGTTTTTAATTATCCCTATAAATTAGTGTCCTACAGCGAGGAAGCTGCACTGTCCAAATTAGAAGTATACCTCAAACATGGTTTcacataaataattatagttAAATAAAGGGGGTTTAGAATGCcttctattttttttagtaAACAGTTCTAACCCTAAACAATTAATTCTGTTCACACGGAGGTGAAACATCTAgaattatacatataatttagAAGTATTTCCATACAGTTACTATAGTAAATcatattgttgcattttttttttttgagcacatcttttaaaaaaaaaaacaggtataaACTGCCTTTCACTGGcatttcctttttcatgtaGGTTTTTAAATCTTGATCActcttgatttaaaatgttgggACAGGGGTGGCAGTAGATATTGGGGAGAAGAATACTTGACCTGCTTTCCATAAGGtctaaaacaaactttttagggttattttgttttcttccagcattcaagatttattttcattagccTGAATGGACCAAGCCATTACAAGAGAATCCAGCGAGATCCATCCTCTTATCCTTGTGCTATGTAGTGTCCTACCCAAAGGCCTCAATCCCTCTGCCATGCAGAGGCAGTTTTCACTCATCGTAGTGCAGAGATGATAGGAATTTGTCCACATCCAGGTCGTCCGGAAAGGAGTCCAGCAActtcttctgtttctTGGCTTTCTTCTTACTGCCTGGTGACGCTGcgccctgctgctgctctctcttACCGGGGGGGCTGGCATGGGGTTCCGTGTGTTTCCGTTTCCTGCCCTTGGCCCCCGGGGAGGCTGTGCCCTGCCGCTGCGCGCTGTCCTTCAGAGGGGTGCCCGTCCTGGCGATGGCGGCACGAGACAGGATCATCAGAGTGTGGGCGGCCATGTTGATGCTGTTCTCGCTGCCAGCCTCACTCGCGGGGCTGCAGGTGGGCAG

Function

symbol description
acat1 Predicted to enable acetyl-CoA C-acetyltransferase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in mitochondrion. Is expressed in liver. Human ortholog(s) of this gene implicated in beta-ketothiolase deficiency and carbohydrate metabolic disorder. Orthologous to human ACAT1 (acetyl-CoA acetyltransferase 1).

NR:

description
PREDICTED: acetyl-CoA acetyltransferase, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003985 acetyl-CoA C-acetyltransferase activity molecular_function

KEGG:

id description
K00626 ACAT, atoB; acetyl-CoA C-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016228 True 2816 mRNA 0.48 13 12786258 12792197

Neighbor

gene id symbol gene type direction distance location
AMCG00016224 NA coding downstream 8332 12747929 ~ 12777926 (-)
AMCG00016223 NA coding downstream 42478 12738751 ~ 12743780 (-)
AMCG00016227 NA coding downstream 52228 12728114 ~ 12734030 (-)
AMCG00016219 LOC106612992,LOC106581126 coding downstream 179057 12602884 ~ 12607201 (-)
AMCG00016216 dscam,LOC105030490 coding downstream 255213 12514358 ~ 12531045 (-)
AMCG00016225 NA coding upstream 1611 12793808 ~ 12805884 (-)
AMCG00016222 NA coding upstream 27393 12819590 ~ 12842680 (-)
AMCG00016236 NA coding upstream 98781 12890978 ~ 12898310 (-)
AMCG00016232 NA coding upstream 114710 12906907 ~ 12932297 (-)
AMCG00016235 NA coding upstream 147925 12940122 ~ 12949580 (-)
G12096 NA non-coding downstream 147560 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 394850 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 430894 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 432877 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 547244 12238785 ~ 12239014 (-)
G12235 NA non-coding upstream 305794 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 835058 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 846106 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 865246 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 1635428 14427625 ~ 14428817 (-)
AMCG00016211 NA other downstream 457225 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 838936 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1004711 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1938447 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3958498 8823545 ~ 8827760 (-)
AMCG00016226 NA other upstream 57681 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 751151 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1628159 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1993001 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3678414 16470611 ~ 16475170 (-)

Expression


Co-expression Network