AMCG00016232


Basic Information

Item Value
gene id AMCG00016232
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12906907 ~ 12932297 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016232
ATGGTGACGCGCTCGCAGTGCCCGGCTGTGTTCATCATGGCTCCCGCGGCAGACAGGCCCGGCTACTGGGGCCGCCCGACCTCCACCCTGGACTGGTGTGAGGACAACTACGCCGTGTCCTTCCACATCGCGGAGTTCTGTGAGTACACCCGGCCGGGGGACGTGGGCTCGAAAAAAGCCGGCAAATCGGCGCACGAAAAAGGGGAAACTACGCGCACGGATGCACCGGGAATACTGTGAGTAACCTGATCATGATCCTACCTCCGATCTATGGTGCCATACAGACGATAAAGGACGGACTTGAAATCCGTTATGTTTTTGCATATTTGGGACTCACagCGGTTGGTATTGGCTCTTGGTGCTTCCACATGACACTGCAATACAAGATGCAGTTACTGGATGAATTGCCAatgatctacagctgctgtGTCTTTGTCTACTGCCTATATGAATGTTTCAAGCCGAAGAACTCAATAAATTATTTCCCCATTGTGGTCTTGCTGCTCTTCAGTGTCTCCGTAACAGTGGTATATTTACAATGGAAGGAGCCAATATTCCACCAGGTCATGTATGGAACTCTGGTAGCTTGTTTAGTTCTGCGATCAGTATTCATTGTCACGTGGGTGTACCCTTGGCTGAGACCACTTTCCTACACATCTCTAACTGTGTTTATGATGGGATTTTTGCTTTGGAATATAGACAATATATTCTGTGATACCTTAAGGGAAGCACGACAGAAGCTGCCCCCTGTTGTTGGCGCCGTTACACAATTTCACGCATGGTGGCACATCCTGACAGGCCTGGGATCCTACCTTCACATTCTTTTCAGCCTCCATACAAGAACTACCTACCTCAAACACAGACCAAAAGTAAAgTTTATATGTGGCGTCTGGCCGGTGATCCGAGTTGAGCCTCCCAAGAAAAACTGAGGAAGGGaagagccgagccgagccgagatGTTCACACGCTGTGCAGCGAGGCCTTCAGGAGGCGGTCCAGCTTGACCAGGGTCACGGCCTGATGGCGGCAGCCCAGGAGTCTCCCCATCTCATAGAAGGGATACTTGAATTTCCATGTATGACATAAAGTTATAGATTTGCCAAGTGTAGTATTTAGTGTAGATAGCAGGGGAatgatatggctttttcttttttttacgtTGGATCATATTTCTGATCTTGTGGTGAAATTATTTGGTGGAAATTtagatatttgtattaaacagtATGTGTATATTATGGCTGCAATTTACAGTATAAGGTAGGAATAGCTGTGTAATTAAGAGCGAATTGTGGCTCTTAAGGGTCCtaaatgaaaaattatataaaaattagTGACAATATAACGATGATAAGAAACAGTGCTCTCATTTGCTGTTATTACGAATTGGTGCACCAGACTTAGAATTAGTGTTCAGACCTAGATATGTGGAACTCTAATTCTGGAGTAGGGATTAAAAGTGGTTACACAGCTCTTCACGTCCAGTCATTGTAAGCAATGCCATGATATTTTTGATGGAcaaaaagattatttttgtgCTGGCCACAAAACAGCAGGTATGATTTACTGAAGTGGTCTTCACTTCATTTTCAAGGGATGAGCAGTGTTTGCTGGTTGACGTTATCGAACAATGGCCATGTAGGCAAATGCTATATCATCTCAAATTACGGGGGGGCCAAAAGCTAGGCTATATAACTGAAAACTGGAAACCTGTGTTAATCTGCATCGCACAGGTTTTCAGTTTGTGCTCATTTTCATAGTTTTCGTGGCTCAGCCTCAAGCTGTAGGATAACAAAGATCTCCGAATTCACTAACTGATGTTCGGGTGTTGTCTGAAGATAAGACTACATTTAGCAGCCGGACTCATTTCTGTACAATTACGGAACTAGACTGGAATATTTCTACTGAAATCCAGCGATTTTGCTTCTTATCGTCTTTCTTCCTTATGAGTCAAGCAATGGTTCTGAAGCAATTattctctatatataaatatatagttagtGATATTGATATTAACCGTTAAGATATATTGAGACCTTTTTGTCTATGCAAAGTCACTAgccaaaaattatattttaaaaggcagtaCAGAAACTGGaagacattttgtatttgtatattttattttaagttaatttagcaTGTTAAATTGTCCACCAGGGACTAGAAACTAGTCAGTAGCCCCGGATGAGTCTTGCTTAACACCTGAATATTGTTGCCTTACTTTCTACCTAGGGGGTTGGGGATTGTATGTAATTTGAAATTTTACAATGCCACTTTAACCTTTAAACTGCATATTTTCAGATGATTTACTACTGTATTCTACATGtcaatttaatgtatataatttaatttattctgcatgCGGTGTTTGTGAAAGCCTGTTACAGAAACCACTCACCTCTGGCTTTTGTCCTGAGAATTGCGCTGCATTTGTGTTCCTAATTTTTTTAAGCTCTAGATGTAATCGACTAGAAgcaagattattttaaattatattttcaatgagtactatatttaattttctaacaGATAGAGGTATTCTTATTCACTTCTTTACCGACTgatcagttttttctttttgattactttttttgtgaccataaaataattttcacatacagcattcaaaaacaattttgaGTATTTTATGTGTGTAAGAAACCCATTTCACTGAGAAGTGGATATGAACCCAGGCTTTTTCAGGGTGTACCCTTGGCAGAGAACACCTGTTGTAAAGGTGTCAAATTTCTCAGAACAGGCCAGGCAAGGGTTTTGTTGTACTTCACTACAGTATAGTTTCATTCACTGTGTTTCAATTGAAGACATGAAGTTTgtctttttcacatttgtaaaacatttcatcAGTATTTGGACAAAGGCTATGATCtaaatgtttttccaattttaattaactcttattctctttgtgtttctgtaatatGCCGATGACTGTCTATCTTTCTGGCTTGTGAATATAACCATTCAAAGACAACGTCACATGATAGCGCTTCTATACTTTGTTAATGTGTCTGCAATTCATTGAAGATGCTATAAATGTGAATTtctaaatgaaaaggaaaactacTGAAAATTATTATGGAAGTCTACCACTGCACAACTggaagatgcatttaaaaagtggtCTATCTGTGGGGCATGGACTCAGACAGAAAATCGGTTTTCATTggtatatattcaaattaaaatatcactGAAAGATCAGGTGAATGCTTTTGTATCAATCTCTTTGTGTTCTGAGGTTTATAATAActtagtattgttatttttcaaaagctgcTAACAGCTtgtgtgtttgaaattaaatcttTGTTCCTTCTCTACATGGTCTGAAATGTAGAGAAGGTGATTTCTTGCTGGTAGTTGTGCTATATATAGGCCATAGAGGTGAAGGATGCCTAGAAAATACTTATTTGAGCTTatgcttaaaataacattgaaagGATTAGCTACTGGAATGGAGTAAACTGGAAGAGTCACTTATTTCTTAAGTTACAAGGATAACAGAGCAAACAATCACCTGAGGAATGTACAGCCTGTCATCACATTTCAGAATAGCTTCAGGTGTTGTCAAACTGAAAATTTGAATAATCTAGGCAACAATGACGAcactctctttttctttttgtatcttttatttttccacccCAGCTCTGTATGTATGTGAAGCACAATTTTAAGAACTAATACCAGTCTACTACACCATTGACAGCAATGTACCCTCCTTAACCTGATATTAATTTAGGTTGTACACTGAACAAAACTGCGAAACAGATGCTGTTAGTGAGGAACAAAGATGCATTGCACTCCTGTTAAGTGTGCCTTAGTTTTAAACTGGAAGTGTGATCCATGTTGCCTTGAAGTCccttctgtaacatttttataatgaatgGTACCAACATATGGTTCGGTTAAATGTTACTTGGGTAACGGCATCAATAAATATGCCTGGAAACTTACCAATTCAGTACGTGCTGTTTTATCTGCAGTAGTTAGTAAGGATTGGTAAGTAACTAAGGCCAAGCATTCAGTAACATCCTGTTGAGTAATGTTGAAATAAGAGGAAGCAGAAATCCTGTCATCCCGCTCCTCTCATTAGCTTTGAACCTGAACCTTGGCTGTTGATCCTTCCCAAGCAACTTTTACCTAAACCCAtattaaaagcattacaatggagttttctgttctttccctttctctttcgTTACAAGTATTTCTAATTAACAAGAACACTAATGTGAAATATACCATGATTTGGTAGCATTGTAATTCAATTTTGTGGACTGATTCTTATTACTTTAAATCTTTCAACCTCCTCACATTGTTTCTAGCCACCAACATAGTATTCTGAAAACACTGGGAGCTCTAGCTTAACATGCTGAAATGAACGGAGACTTCTGTTCATGCTAATGCACTGATCTGTATTGTTCTGTACAGTCATGTACATTTTGTGAAGACATGTTTTGTTAGACTTATCTGCTGTCTATTATGTGACCAAATTTGTATGTACTAACCTTGTATTACATTTGTACTATGTAGATTTAATTTAAGGGGTGTGTGATAAAGGCTTCTATTGTATTTGGATGTTGTTCTTTGTCATGTCATGTTTTGCTTCAGTTCTTTTACACtcattgttttccatcttgCATCCCATCCCCAGTTTCTATgtctttgcttttttaaatacaaactttgttgtttttctagcCCCATACATAGAATAGTTTATACTGTACCAATTGgtctttaaacaaaaatggcaCTTATGGAGGTGAACTGAAGTTTGGtgcaaaaactaacaaaaacatgGAGAGTTTGGTCAAATGTACATGCATTATTTTGAGAACACATTCTacttttggttgtgttttttattgaatgtttcTCTGCTTGTCTGTtgctttcaaaaatgaataaatcattgCTTACACTTTAGAGTAGACCAGATTTGGAAATAACCATGATGAAATGATTAGCTTAAGGAGACAAATCAGAACAATACTGTCCTCTAGTGGTACTAGTTAACTTAAGGTTAAGCATTCACTGGCTGTATGGGAATAGATCGCATTTAGTTTTGTAATAGATAAGGTTAGAAGCCAGACATTCCTTTGAAATTCCTAAACACCTTTATTCTCGAAATGTATATGAAATTGTAACAGCTGCTCTTATAGAGATAATTACCAGTCTGTTCTTGTGATCTATATTCGGTCTGTTTACCCATGGCTTTATAGATGCAGTATTAATAGAAAGGGGCTTTATCATCAAAGGCTACAGAAGCAATGCCATGGCATAGACTGGTCTCTGTGGTGGCTTTTCGCCGAAGTCCCACCGATAGTCTGTGCTACCGGAAAATGACACGCATGCATGAGAGTTATCAGACTGTTA

Function

GO: NA

KEGG:

id description
K04711 ACER3, YDC1; dihydroceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016232 True 5406 mRNA 0.38 11 12906907 12932297

Neighbor

gene id symbol gene type direction distance location
AMCG00016236 NA coding downstream 8597 12890978 ~ 12898310 (-)
AMCG00016222 NA coding downstream 64227 12819590 ~ 12842680 (-)
AMCG00016225 NA coding downstream 101023 12793808 ~ 12805884 (-)
AMCG00016228 acat1,LOC107653722,LOC107583377,LOC107565255,LOC107758700,LOC107679529,LOC107743429 coding downstream 114710 12786258 ~ 12792197 (-)
AMCG00016224 NA coding downstream 128981 12747929 ~ 12777926 (-)
AMCG00016235 NA coding upstream 7825 12940122 ~ 12949580 (-)
AMCG00016233 serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107743426 coding upstream 45979 12978276 ~ 12983296 (-)
AMCG00016234 stch,hspa13,LOC106613070 coding upstream 128444 13060741 ~ 13062765 (-)
AMCG00016238 NA coding upstream 132919 13065216 ~ 13071642 (-)
AMCG00016243 NA coding upstream 535061 13467358 ~ 13477045 (-)
G12096 NA non-coding downstream 268209 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 515499 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 551543 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 553526 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 667893 12238785 ~ 12239014 (-)
G12235 NA non-coding upstream 165694 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 694958 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 706006 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 725146 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 1495328 14427625 ~ 14428817 (-)
AMCG00016226 NA other downstream 36347 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 577874 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 959585 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1125360 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 2059096 10834412 ~ 10847811 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 611051 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1488059 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1852901 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3538314 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 3926244 16858541 ~ 16861179 (-)

Expression


Co-expression Network