AMCG00016233 (serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107743426)


Basic Information

Item Value
gene id AMCG00016233
gene name serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107743426
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12978276 ~ 12983296 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016233
GTTCAGAGTTCCTCATTTAAATATTCCTTTCCCAAGTTCCAGAATTTTCTTTTGCAGTGTATATAGGCCTGCAAGAGGATCTATCTCTCATCAAGCCAACAGGACAGACGTCTGCCACGGGGAAGAAAGCCCAGCAAGTGCCACAGAAGAGCCTAATAAGGTAGGATTGGATTCTGAATACAAGAATCTGGCTGTGCAGGGCTCAGTGATTTTAGGGAATTTAGAAAAACATgatctttccttttctttctccttttctaaAACACCCATACAGTACAAATAGTTCAATTTTTCcttcagagattaaaaaaagcttGCATACACTATTACTTTATCTATCAGAAAAGATTAATAAAGATAGATACTTTATCTACAATATATGCATGATAAATCTTGCTTGTGAATGTAGACTAGGCTTTGATAGTTACTATTATGCAAATCACTGCTGTCTGCTAATTGAGGAGCACTCCCTTCGTGAGACATGGTAGAAGTGTGGAATTGTTCTGAGTTCTCTTCATAACTTTGTTAACAGCCCCACCCAACGAGAACATCTTTTCCAGAGTGTGAGTGCTTGCACAGTGTTATTTAATCCATGTGACTGCTCTAATTGTGAATAGTGGAATTGTCTGattcagaaatgtatacatgtcTTGATTTGAGATAATGAACTCGAAATTGCCTGAATGAGATAATCCAGTAGACTGCATGGCAGATTTGTCTCAGTCTGTGAACTGTAGCCGGTGGGGTGGGTTATTGTAACAAGATCTTGGTTTAGAATTTGGCTTCCATCACTAAGAATGTCCACTGTGGCATTGCTGATTGGACAGAAGTTAAGAAACAAGGTCAACTTCCAGCCAATAAGaacattttgtgtgtctgtgtgcatgcaGCATTCGTATGGCATTATTGAACACTGAAAGAAAGGGAACATTGACAAAACTCTCAGTTATAGAGAGGAAATCAGATCAAATGCAGttgctgttgaaataaatgcCTCCATTAAGACACAAAgcgtttttttttcccctcttgctGCTTGGAGATTACTATATACACCTCTTGTCTTTCAGAATGAAAAGGGCAAACGTTGACATCAGTATGAAAACCTTTCAAGGTATCCCATGAtgtaaagaaatgaaaaccaaaacaacacaataacaataaatagcCTTCGCTATTTATGCCTTTGTTTGTGTAGTTTCATAGTTTCcatttggaagaaaaagaatgaaagaatgatATTGAACTTTTGTGGTTGAAATCATAATTTCATTGTGCAGCCACTCCTGGCTTTCAGACCTTCCTCAGGCTACATATTTAGATCATTTTGTTCAGACTGCTGCTATTCAGACTCACATCCTCTGTTGCTACACGTCACCGCACGCCTCAGGCACAAACAGTATTGTCAGGCTCAAACATTACAATAGATAGCTGAGAAGCGCCATGATGGGCTGTGcagattataatatatatggCTAATTGATGGACAATGATTCAAAAATCTggacaataaaaatacaaaatgggcACGAAGGGAGAAAGAAGTaagtatgaaaaaaattaaaaaccagcTCAGCACGTCTTGCTTGAATTTTGCATCcggtcttgtttgttttgtctggtttcaactatataaataaaatgtgctttttatattAGCACATCAGtatggtaaatgtttttttttttaatacaaacatacagctgtgtttgttaATTACAGCATGCAATGGATTTAAACTGTAACTCCGTTCAAGAGAGTCAAGTATGATTTCCATGATGCTTTGGCTCTCTGTTCTCCCTCATGTCTCTCTGTAGTGCGCTGCTGACGTGGCTCATATCAATGTGAGGTGTCTGCACAAATGCCTCCTTGGAAATTTCCCATAAATAGACTCAGCCCTGCTCTTACATAAATACGCCggtgtataaatgtgttatatatttaacatggcAGCACGATTTTTGTAATAGTTTTTGTGGGTAGTATGTTTCTCCAGACAGTGGATTACGAGTCAAAGTTAAAGTCTCTTTGTGTCCCTTTGAAAATCAAATAGAATCTGAGAAGTTCTGAAAGTTTAAGAGCTTATCCAGAAATCCAACTGATCGTTAgataatatttgtttgtctgGATTGTCCCCCAGGATTGCAGTGCTGCTTCCTGTCATTGAAACCATGTGGGTGACGAAGCTCATAGTTCTTAGCCTCTTGGGTATGGTGGCCACTGCTGAAGACAAGAAGCTTAGCAGCCATGCCACCACATTAGCGGACAACAGTGCCAACCTGGCCTTCAACCTCTACCAGAAGATGTCCAAGGAGAAGGACCTGGAGAACATCCTCATCTCGCCCGTGGTGGTGGCCTCTTCCTTGGGCCTGGTTCACCTTGGGGGGAAGTCCTCCACAGCCTCCCAGGTCAAGACGGTCCTCAGCGCTGACAAGGTGAAGGATGACCATCTCCACTCCGGGCTCTCCGAGCTCCTCACCGAGGTCAGCAACTCAACCGCCCGCAATGTCACCTGGAAGATCGGCAACCGTCTATACGGCCCCAGCTCTGTCAACTTCGCTGATGACTTTGTCCAGAACAGCAAGAAGCATTACAACTACGAGCACTCCAAGATCAACTTCCGGGACAAGAGGAGCGCCCTGAAGTCCATCAATGAGTGGGCATCTCAGACCACCGACGGGAAGCTGCCTGAGATCACCAAGGATGTGGAGAAAACAGATGGAGCAATGATCATCAACGCCATGTTCTACAAACCTCACTGGGATGAGAAATTTCACGACAAGATGGTGGACAACCGTGGTTTCCTGGTGTCTCGCTCTCACACTGTTGGCATTCCCATGATGCACCGGACAGGACTCTATGGGTTCCACGATGATACCGTGAACAAGCTGTATGTTCTGAGCATGCCTCTGGCACATAAGATGTCCAGTATGATTTTCATCATGCCGTATCATGTGGAGCCACTGGAGAGACTGGAGAAGCTGCTGACCCGCAAGCAGCTGGACACCTGGATCAGCAAACTGGTGGAGAAAGCTGTGGCTGTCTCCCTGCCTAAAGTCAGCATGGAAGTCAGTCACAACCTGCAGAAAACCCTTGGGGAGCTGGGCCTGACTGAGGCTGTGGACAAGGCCAAAGCCGACCTGTCCAACATGTCTGGGAAGAAGGATTTGTACCTGTCCAATGTGTTCCATGCATCTGCCATGGAGTGGGACACAGAGGGCAACCCATTTGACGCCAGCATCTACGGTAGTGAAAAGCTGAAGAACCCCAAGCTGTTCTATGCTGATCATCCGTTCATCTTCCTTGTGAAAGACAATAAAACCAACTCAATCCTCTTCATTGGCAGGCTTGTAAGACCCAAAGGAGACAAAATGAGGGATGAGTTATAGTCTTGTTACAGGGTATTTTTGGGTTTAGATGATGTGTGAGGCTTAGAAGTACGGTAGGGCAATGTAAACAAAGAGAATGCGACACGTATGCAACCTTACAGACACATTCCAATAGAAATCTTTACACTGTGGATTTGATATCTGCTACACCCACTCCATAAAGATATTTCAAAAGAGTAAACTTACCTCAGAGCGAGCCTGTGAAGATCTTTaactttgtaaatgtttgataTTACAATTGCTTGCTTCCAAGAAAGTTCACTTTTGTTCAGAAGTATTTTCAATATTACTGGTTTGGACCCACGGTATTTGTTTCCTCCACCTTGACAATTTGTGGTAGAGTTCAGACAATCACGCCATGAAAATCACAGTTAATGGTGGATACCATGCTTATATTAAGTATGGTGTCTTCAGTTTGTTGCCttatatgtaaaaacaacattCCTCTCAGGGTTTCTTGGTATTTTTAGGTTGGGCTACCTTTTAGAGAGTATTCACTCCAGCACCTCCAGAGTTGTGATTCGGAAACCTGTAAgtgttaaaatgtctttaatgtttaaagtaaATGGGTACAAGTGTTGTTCTGGACAATGTTTTGTGAGGTTGCTTGGTGATTTGATGCTGTTTTTTACTCTATAGCAAAATACATTCCCCTCTtcgttacattttaaaatgatctgatTAATTTACCTTCCATCTGCACTGAAGACCACTCTTCTGCACTAGCCAACATGTGAGTACAAGGCAATAACTGTGGCAGCTGATTGACTGAATAGTTTCTTCCTGTGTTTCCATACCATGTTAGGACGTCATGataaggtttttgtttttggcacaACACTTCTTTTGGAATGATGTAATACCAAGTGACTGAACTAGCATTTCGTTTTGgtattgtttttggtttcttttttcaataaaacattgaaaaataaaaaca

Function

symbol description
serpinh1b Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within fin regeneration. Predicted to be located in extracellular space. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including ectoderm; fin; germ ring; mesenchyme derived from head mesoderm; and mesoderm. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 10 and preterm premature rupture of the membranes. Orthologous to human SERPINH1 (serpin family H member 1).

NR:

description
PREDICTED: serpin H1-like

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K09501 SERPINH1, HSP47; serpin peptidase inhibitor, clade H, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016233 True 4330 mRNA 0.42 4 12978276 12983296

Neighbor

gene id symbol gene type direction distance location
AMCG00016235 NA coding downstream 28696 12940122 ~ 12949580 (-)
AMCG00016232 NA coding downstream 45979 12906907 ~ 12932297 (-)
AMCG00016236 NA coding downstream 79966 12890978 ~ 12898310 (-)
AMCG00016222 NA coding downstream 135596 12819590 ~ 12842680 (-)
AMCG00016225 NA coding downstream 172392 12793808 ~ 12805884 (-)
AMCG00016234 stch,hspa13,LOC106613070 coding upstream 77445 13060741 ~ 13062765 (-)
AMCG00016238 NA coding upstream 81920 13065216 ~ 13071642 (-)
AMCG00016243 NA coding upstream 484062 13467358 ~ 13477045 (-)
AMCG00016248 NA coding upstream 501041 13484337 ~ 13494574 (-)
AMCG00016244 NA coding upstream 538878 13522174 ~ 13534975 (-)
G12096 NA non-coding downstream 339578 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 586868 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 622912 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 624895 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 739262 12238785 ~ 12239014 (-)
G12235 NA non-coding upstream 114695 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 643959 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 655007 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 674147 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 1444329 14427625 ~ 14428817 (-)
AMCG00016226 NA other downstream 107716 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 649243 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 1030954 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1196729 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 2130465 10834412 ~ 10847811 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 560052 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1437060 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1801902 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3487315 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 3875245 16858541 ~ 16861179 (-)

Expression


Co-expression Network