AMCG00016234 (stch,hspa13,LOC106613070)


Basic Information

Item Value
gene id AMCG00016234
gene name stch,hspa13,LOC106613070
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13060741 ~ 13062765 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016234
ATGTCccccctcttttcttttttacttaaATGTGTTGCAGGCTCGGCTGTCCTAGCTCTTTTGCTGGCTGGTTATTTGGGTCAACAGTACTTGCCTCACCCTAAGCCCAAAGTCATCGGTCTGGACCTGGGCACCACCTTCTGCTCTGTGGGGGTCTTCCATCCCGGCGTGGGGGATGTGGAGGTGATTGGTGATGAGGACGGGAGGAAGAGCCTCCCAAGTGTGGTGTCCTTCACTGCCTCTGACATCAACGTGGGCTATGATGGACAGGAACTGGCCGACGCCAATCCTTACAACACCATCTACGATGCCAAAAGATTCATAGGGAAGCTTTTTAAACCCGAAGAGTTGGCTCAGGAAAGTGCCAGATACCAGTTTAAGGTTGTATATGACAACGGGAGTGCAGAGTTTTCAATAACGACCAATCGGACGTTCACTGTCAGCCCGGAGTTCATTGGCTCCCGCCTCCTCCTGAAAATGAGGAAGATGGCAGAGAGGCACCTGGGAGTGCCTATCTCCAAGGCCGTCATCTCTGTGCCGGCGGAGTTCGACGAGAGACAAAGAAACTACACAATCAGGGCAGCCAATCTGGCAGGTCTGGACATCCTGCGGGTGATCAATGAGCCGACGGCAGCAGCTATGGCCTATGGGCTGCACAAGGCGGACGTCTTCAATGTGCTGGTGGTCGACCTGGGGGGAGGAACCTTGGATGTCTCCTTATTGAACAAACGGGGAGGCATGTTTCTAACCAGGGCCATGGCAGGGAATAATAAGCTGGGGGGCCAGGACTTCAACCAGCGGCTTCTGCAGCACATATTGGAGCGAGTCCAACAGCAGTACGGGGTCCTTCCCTCGCGCAAGGAAGACATCCACCGTCTGCGGCAGGCCGTGGAGCAGGCCAAGCTCAATCTGACCCTCCAGCCCAGCTACTTGTTCAGCACTGCCCTGAGCCTGGAGCCGCGGGGGCCCCAGGGGGAGCCCCAGGGCGTGCAGTTCCAGGAGGTGATCACCAGAGAGCTGTTCGAGGAGCTGAACGCCGACCTCTTCCAGAAAATCCTCATTCCAATCGAGGAGGTGCTGAGGGAGGGCCAGCTGGCCAAGGCGGAGGTGGACGAGATCGTGTTGGTTGGCGGATCAACGAGGATCCCCCGCATTCGCCAGATCATCAGCGAGTATTTCGGGAAGGACCCAAACACCTCCGTGGACCCGGATCTGGCGGTGGTGACTGGCGTGGCCATCCAGGCAGGGATCATGGGTGGCTCCTGGCCTTTGCAGGTCAGCGCTATCGAGATTCCCAACAGGCACTTACAGAAGACGAACTTCGATTGA

Function

symbol description
hspa13 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Predicted to be involved in cellular response to unfolded protein; chaperone cofactor-dependent protein refolding; and protein refolding. Predicted to be located in endoplasmic reticulum. Predicted to be active in mitochondrion. Is expressed in liver and post-vent region. Orthologous to human HSPA13 (heat shock protein family A (Hsp70) member 13).
stch stress 70 protein chaperone microsome-associated 60kDa protein

NR:

description
PREDICTED: heat shock 70 kDa protein 13-like

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K09491 STCH; stress 70 protein chaperone microsome-associated 60kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016234 True 1329 mRNA 0.57 4 13060741 13062765

Neighbor

gene id symbol gene type direction distance location
AMCG00016233 serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107743426 coding downstream 77445 12978276 ~ 12983296 (-)
AMCG00016235 NA coding downstream 111161 12940122 ~ 12949580 (-)
AMCG00016232 NA coding downstream 128444 12906907 ~ 12932297 (-)
AMCG00016236 NA coding downstream 162431 12890978 ~ 12898310 (-)
AMCG00016222 NA coding downstream 218061 12819590 ~ 12842680 (-)
AMCG00016238 NA coding upstream 2451 13065216 ~ 13071642 (-)
AMCG00016243 NA coding upstream 404593 13467358 ~ 13477045 (-)
AMCG00016248 NA coding upstream 421572 13484337 ~ 13494574 (-)
AMCG00016244 NA coding upstream 459409 13522174 ~ 13534975 (-)
AMCG00016247 zgc:112083,LOC108278169,LOC107726099,LOC107662779 coding upstream 472929 13535694 ~ 13542635 (-)
G12096 NA non-coding downstream 422043 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 669333 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 705377 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 707360 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 821727 12238785 ~ 12239014 (-)
G12235 NA non-coding upstream 35226 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 564490 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 575538 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 594678 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 1364860 14427625 ~ 14428817 (-)
AMCG00016226 NA other downstream 190181 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 731708 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 1113419 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1279194 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 2212930 10834412 ~ 10847811 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 480583 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1357591 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1722433 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3407846 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 3795776 16858541 ~ 16861179 (-)

Expression


Co-expression Network