AMCG00016235


Basic Information

Item Value
gene id AMCG00016235
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12940122 ~ 12949580 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016235
ATGAAAGAAGAGCGACCACTGAGCTATAAAAgAGGAGAGATGGCCTACATCCTGTGGATCAGCATGAATctgcttttcagtttttacGTGGGAGCGGTGAAGAACTGCTATCCAGGGTGCCGCTGCGAGGTGGAGAGCTTCGGCCTGTTCGACAGCTTCAGCCTGACTAAGGTGTACTGCAGTGGAGTGGGACCCAATGTGGCACCAATTCCTATCCCTCTCGACACCTCCTATCTAGACCTGTCTTCTAACTCCTTGCACAACATTGCGGACTCCATGCTGTCAGGACCTGGCTACACCACGCTTGTCAGCCTGGATCTGAGCAACAACCACCTCTCCAAGGTCAACAGAAACACCTTCTCCAGACTGCGGTACCTGGAGACTTTAGACTTGAGCCACAACTCTCTGGAGGACCTTGCTGACGAGTGCTTCTCCGGTCTCCCACTGGCTGAAGTGGATCTGAGTTCTAATCGGATCCAAGAGATCAGCCTGGACATCTTCAAATCCAAGGGCCATGGGAAGCCTGTCAATGTGGACCTTTCCAACAACTTATTGACTAGAGTGTTGAGGAGGCCGCAGATGAGTCCTCTCAACATACAGAGCATGAACCTGTCGGGGAACCACCTGAAAGACGTGCCCAATCTTCAGGGTGTTCTTTTGCGATACCTGAACCTTGATGGGAATCGAATTGTCCAGATAGACAGGGGTGCCTTTGCAGGGCTGAAGGACCTTCTCTACTTGTCCCTTAGTGGTCTTCCGGACCTGTCTGTTATCCAGCCTCACAGTTTCCGTGGTCTTGAGAACTTGCAAGTTCTTGACATGTCCAAGAACCCAAAATTAAAATTGCTGAATTCAGAGGTGTTCAGCGGCCTTCTTTCTTTACAGGAGCTCAATCTGTCCAACTCTGGTGTGACTTTCTTACCAGATAACATGTTGAACCACTTGCCAAGCATCAGAAGCATTACTCTGAGAAATGATGTCCGTTGCTGGAAGAACCAAAAGCAAGCATGGTTTCATCAGCAGATCGGACAAGTGAAGAGTGGCGAATTCCTGATATGTGATGTAGCTGGCATAGTTTTATGAAGTAGTTACTTCAGACTGtcctgcaacacaaacaaatattaaagcctgaaatgtgccttttttaattctgaagaaaaacaatttaaactttgtttttattcctgcCAAAACTTgattttgtgatatttttgtaatttaaggaaagaaactgaacacattgcatttgtattattcctTTGAAAAATCCATAAGTGCAAGTAGTGTGATTACACTATTTTCATGACAAATTCTAACCTTttattttggtacaaattgtCATATTTGTTAAGGGGACTAGAAGGCCACAAAAAACCTAAATATTGATGTTTATGGAATAAGAGTGATTACACTTTTCATTGCAGTTTTTCCCTCCGTGGCATTAGAAGACTGCTGGAAATGGCAAAGCTCTTCAGATGTAACCATTCAGGTCAGGGAAAGTTTTCAGAAGTTTGGACCAAAGTGATAAAGATAATTAATACAGTATAGAAATGGACATGTCAGTTTGTTTGTAAACCAGATACCTCTTGACCTACAAATGGATGGTACACGTGACATAGTCTTTCCCTAGCCTGGTTAGAAACTGAACACCTGAAAGTCTGTATTGAAGTACTAAACCTTGCTAATATGAACACTATGCTGGGGCTCTGATCAGCTCTTCCCAAGAAAGGGAGCTAAAGTGCCTTAAGTGTAATTGTAGCAACGTGCAAAGATTCAGTTTACATCTTTATGTAAATATGTGGAGATTGTAATAATTGATCAAATGGAAATGAatataacatgaaaaacaacaataaaaaggtCAACAGAATGCTAAAATACACTGCACAATAGGAATTTTCTTTTTGTCTAACTTTTACAAGATTATACTTAAGTCTTCTGTTCGTCATCTATGTGATTAAGTAAAATGGGAGGTTGAAGTTCCTTTGAGATACCGCTTCGACCTCTGCAAGATCTgttaaaccttttttaaatcattctgaATTTGCTTGAAAGGATTTTGCCCACACGTGTTCTTTATTACTATGACCTGCATTTCatatggttttaaattattaaagtgTGTTCACAGTTCTTTTAAGTTGCCTGCAGAGATATTCACAGTTCAGACAATGTTAAATTGGGCTGTGGGTATCATTACTTATGTAAATTACCTTTTATTCCCTGATCCCATTATCAGTTTTGCTGATCTATACATGTGTACGAGCGAATTTTTGGGAAAGTGTTCACAGAATTAGCTTTTAATCGTTGATCGAAAATTAACATTTACTAATCACTGTGTCTTTGTAAAGACCAATTTGGGATCTAACCAACTTGCTGTGTATTGCTTGCGTCCTCTTCATGTTATGAATCGCAGTTTGCAGCCCCCTCCATGTTCATAGtgaagatacacacacatacccttttatttttctgcgGGCAGAAAATGACAATGTAAGTTTTGTAATAAATGATCTTTAAGTACAtccataatattaaatatttatattttagtaatgGTGGTATTATAAACAAATTTGGAGTGACAATCGGCTTCATGACTGCAATTTAAGGGATTTTCATTGAAGAATCTCACAGCCTAAGGAGCAGGTTTTGTATGTTGATGGCaacaatatatgtaattatgtatataacactaaaataaatctaaaaccatAATGAGAA

Function

GO: NA

KEGG:

id description
K08130 TSKU; tsukushi

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016235 True 2724 mRNA 0.40 2 12940122 12949580

Neighbor

gene id symbol gene type direction distance location
AMCG00016232 NA coding downstream 7825 12906907 ~ 12932297 (-)
AMCG00016236 NA coding downstream 41812 12890978 ~ 12898310 (-)
AMCG00016222 NA coding downstream 97442 12819590 ~ 12842680 (-)
AMCG00016225 NA coding downstream 134238 12793808 ~ 12805884 (-)
AMCG00016228 acat1,LOC107653722,LOC107583377,LOC107565255,LOC107758700,LOC107679529,LOC107743429 coding downstream 147925 12786258 ~ 12792197 (-)
AMCG00016233 serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107743426 coding upstream 28696 12978276 ~ 12983296 (-)
AMCG00016234 stch,hspa13,LOC106613070 coding upstream 111161 13060741 ~ 13062765 (-)
AMCG00016238 NA coding upstream 115636 13065216 ~ 13071642 (-)
AMCG00016243 NA coding upstream 517778 13467358 ~ 13477045 (-)
AMCG00016248 NA coding upstream 534757 13484337 ~ 13494574 (-)
G12096 NA non-coding downstream 301424 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 548714 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 584758 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 586741 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 701108 12238785 ~ 12239014 (-)
G12235 NA non-coding upstream 148411 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 677675 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 688723 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 707863 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 1478045 14427625 ~ 14428817 (-)
AMCG00016226 NA other downstream 69562 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 611089 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 992800 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1158575 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 2092311 10834412 ~ 10847811 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 593768 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 1470776 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1835618 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 3521031 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 3908961 16858541 ~ 16861179 (-)

Expression


Co-expression Network