AMCG00016244


Basic Information

Item Value
gene id AMCG00016244
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13522174 ~ 13534975 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016244
CCTGGGTAGGGGAGGGCAGGAGACTGAGCTAGGCAGACAGCAGGGAATCGAGGAAGAGTGAagtacaggagagagagagagagagagaacgaacAGGAGTGAGAGCGAGAAAGAGGAAGGTGATCATTTTGGAGTTACACAAGCCGTTTCAGGACATGGAGAGCCCAGAGAGCTCCTCCGGGGTCATGGGTCTGCTGAAGACCTTTGATTCCTCTGAGTTTGGGAGCTGGGAAAAGATCGGCTCTGGAGGATTTGGTCAAGTTTACAAAGTACGCCATGTACAGTGGCAAACATGGCTGGCAATCAAGTGCCCTCCTAGTCTTCACGTTGATGAAAAGGAGCGCTCAGAGCTGCTGGAGGAGGCCAAGAAGATGGAGGTGGCCAAGTTCAGGTACATCCTACCTGTGTACGGGATCTGCAGCGACCCTGTCGGGCTGGTGATGGAGTACATGGAGACGGGCTCCCTGGAGACCCTGCTGGCCTCCGAGCCGCTGCCCTGGGAACTGCGCTTCCGCATCATCCATGAGACAGCAGTGGGCATGAACTTCCTGCACTGCATGAACCCCCCGCTCCTGCACCTGGACCTCAAGCCCGCCAACATCCTGCTGGACGCCCACTACCACGTCAAGATCTCCGATTTTGGCCTGGCGAGGTGGAACGGTTTCTCGCGGGCCGATGACATCAGCAGAGATGGCTTCTGTGGGACAATCGCCTACCTCCCCCCTGAGAGGATCATGGAGAAGGACAGGGTGTCGGACACCAAGCACGATGTATACAGctTTTCAATTGTCATCTGGGGGATTCTGACGCAAAAGAAGCCATATGCAGAGGAAAACAACATTCTGCACATCATGGTGAAGGTGGTGAAGGGGATGCGGCCAGAGCTGCAGTCAATCCCACGCTCCCGCCCACAGCCCTGCGCAGGATTCATCTCCCTAATGCAGAGGTGCTGGCAGGAGTCCGCTAAAGACAGGCCCAGCTTCCAAGaaattacATCAGAGGCCGAGGAACTGTGCTCAAAGCCCCAGGAGGAGGCCAAGGACTTAGCTGTAGAACCAGAAGCCAGTCAATGTGATGGGCAGGGCTACACCAATCAGGAGAAAGCCACGGAGAAGAAACGGCCACAGTCCACAGCCCTGACAGAGAAGGACTACAGCCTGTCAGAGCTGCTGAGTCAGATCGACTCGGGCATTTCCCAAAGCTTTGACCGGGTCAAAGAGGACAGCACCCACTCCAAGGAGAACACCAACAAGAGGCTGTCTGGCATCTCCTCCGTCGACTCAGCGTTCTCCTCCCAAGGGTCCATCTCCCTGTCCTTTGAAAAGGAAAACGCAGCCTGTGATTCTGGGACACTGGATGTGCAGAAGAAGAAGCTATGTGAGGCTATCAAGACAGAAGACATCGCCAAGTTGATGAAGATCTTGCAGCCCCAGGATGTGGATCTGGTGCTGGAGGGGGGCTCCAGTCTCCTGCACTATGCCGTGCAGCTCTCCAACGATGAGGCCGTCAAGTTCCTGCTGCTCAACAATGCCAACCCCAACCTGGCCAACAAGAGGGGCTCCACACCGCTGCACCTGGCTGTGGAGAAGAAGCTGAAGAACATTGCCGAGCTGCTGCTGGGCCGCAAGACCAACGTCAACGCGAAGGATGAGGACCAGTACACCCCACTGCACTTTGCTGCGCAGAACGGGGACGAGACCATCGCCCGGCAACTGCTGGACAAGAACGCCTCCATTAACGAGGTGGACTTTGAGGGCCGCACTCCCTCCCACATCGCCTGCCAGCACGGCCAGGAGAACGTGGTGCGGGTGCTGCTGAGTCGGGGTGCGGACATGCATGTCAGGGGGAAGGACAATTGGACACCCCTGCACTTCGCTGCCTGGCAGGGCCACCTGTCCATCGTCAAGCTGCTGGTGAAACAGGGCACCAACATCAACAGCCAGACTTCGGACGGCAGGACCCCGCTGCACCTTGCGTCGCAGAGAGGGCAGTACCGGGTGGCACGTATCCTCATCGAACTGGGAGCCAACATCCACGTCACCTCCGTCATGCTGTACACGCCACTGCACGTGGCAGCTGAGACGGGACACACCAGCACCTCCAGGCTTCTCATCAAGCACAAGGCCAACATCGAGGCCAAGACCATGACTGGCTCGACTGCCCTCCACTTGGCGGCATTGTTTGGACACCTGCCCACTGTTAAAATGCTGATCGAGGAGAAAGCCAGCCTGTGCAGCTCAGACCATGCCCAGCACTCCCCCTGCCACCTGGCTGCAGAGAAAGGGCATTGCGATGTGGTGAAGGAACTCCTCCTTAGTTGTCCAGAGAGTATCAACCTGGCCGACAGTCAGGGCTTCACCCCACTGCACCTGGCTGCCAGAGAGGGCCACGTACAGGTTGTCAGCACCCTGCTGTCCCACGGGGCCGAGGTCAACTGCCACAACGTCATGTCGCAGACTGCACTGCAGCTGGCAGAAGAGAACGGCAAAACAGCAGTCATTAAGCTGCTGCAGAGAAAGGTTGTGATCCTGAAACTCACAGAACTCAAGGACAGTGACTCTGTAGATGGCAGCATCGCTCAAAGTGAGCCGATCAGCGCTTAAGGACTCTCCACTGAGAGAGCGTCACGGTGGATTGTACAAAGCTGTGTCGGAGTTCTGAGCAAGGAAGAGCAGTACCTAACCCACCCAGCTGTTGGGAGTCATTGTTGTATTGTGTACATATTGCAAATCCTGTCTTAATGGCACTCTGAACTTGCAAAACCAAATCTAATATCTCTCTGGGTGCAGCTGGGAAATGGCTTTGGACTTCTGTGAGACTGCCAAACTTCCTTAAATGAGTAGCAGTTTTGTAAGTAATAAACCCAACGTATATAGAGATACGATGGCAGAATTGTACTACCCCatgttaatgtatatatatacatatatatatatattttaatattttttttatactttttattgcacacagtTGGGATGTAAATATCCCCATGTAGATATCAATCCATTGCTAAGTTTGCCTTCAAGTTATTAACACTCCAAGGTGCTTGCTTGACTACAGTAAATGAAACTCGTTTGACATGCTTGGCACGGCTTCCATTACAACTCCACGCCTCACTCCTTGTGTAATGACAAGTGCAAAGGTCCCTGTTgtctttcacagtcactgtgGCTGCCGTCAGAGTGCAGGTGATTAGGATTTTAGACAGTGCTAAAATTGTACTTTCTTACAAAAAGAGCCGCAACTCATAGCTTGGCATTCAGAAAGACGTTAAGTCTTCTTAAACAGCGCCTTGCATTTTTGTCTGTCATCGCATCTCCGGTATTTCACTGTACTGCCCTTTAACGCCAAGCAGACTGATGATGATCTGTCTCTGCAGTGAAAATATGCAGCCGTTCAGTGCCAGGATGCCACACACAGGGACCATGGGAAGAAACCTGCACGGGGAAACTAGACACTTGAAGCAGTTCACTAATTGCTCTGCCTGCTTTGCCTCTTCTTCTCCCTGGGAAACATGGTTATATCTCCCATTCCTCGGAGGTGGGAGCTCCGTGCTTACTGCCTCCACAGATACTGAGGAAATGTCAGGAAGTGGAGAATTGCTGGGTGGATGGCTCACATGTTACATTTACTGAACAGCCACAGATACATGGTTGTGCCATTTTTCACCTTCTCAAGCCCGCACACACAAGCCCAACTGGAAGCAGatattttgcacattgtttaATCTGCTCAGGGGTCCCTGTTGCCTTTTTCATTGTAATATAGTGTTGATATTATTCAATTGTATGCAATGCGTTGttggatttatgtatttgttcaagTGTTTGCACAGCCTCACTTTTGTAAATAATGGTACAGTAAAGTGCATCTCATTTACTGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08848 RIPK4; receptor-interacting serine/threonine-protein kinase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016244 True 3887 mRNA 0.52 8 13522174 13534975

Neighbor

gene id symbol gene type direction distance location
AMCG00016248 NA coding downstream 27600 13484337 ~ 13494574 (-)
AMCG00016243 NA coding downstream 45129 13467358 ~ 13477045 (-)
AMCG00016238 NA coding downstream 450532 13065216 ~ 13071642 (-)
AMCG00016234 stch,hspa13,LOC106613070 coding downstream 459409 13060741 ~ 13062765 (-)
AMCG00016233 serpinh1b,LOC107588392,LOC107666206,LOC107756564,LOC107743426 coding downstream 538878 12978276 ~ 12983296 (-)
AMCG00016247 zgc:112083,LOC108278169,LOC107726099,LOC107662779 coding upstream 719 13535694 ~ 13542635 (-)
AMCG00016245 NA coding upstream 27196 13562171 ~ 13582666 (-)
AMCG00016251 NA coding upstream 49932 13584907 ~ 13595151 (-)
AMCG00016252 NA coding upstream 120063 13655038 ~ 13675532 (-)
AMCG00016257 wnt11 coding upstream 294785 13829760 ~ 13840039 (-)
G12235 NA non-coding downstream 421950 13097991 ~ 13100224 (-)
G12096 NA non-coding downstream 883476 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 1130766 12387798 ~ 12391408 (-)
G12046 NA non-coding downstream 1166810 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 1168793 12353160 ~ 12353381 (-)
G12359 NA non-coding upstream 92280 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 103328 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 122468 13657443 ~ 13659659 (-)
G12585 NA non-coding upstream 892650 14427625 ~ 14428817 (-)
G12594 NA non-coding upstream 896637 14431612 ~ 14436531 (-)
AMCG00016226 NA other downstream 651614 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 1193141 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 1574852 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1740627 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 2674363 10834412 ~ 10847811 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 8373 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 885381 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1250223 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 2935636 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 3323566 16858541 ~ 16861179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002911 ripk4 coding NC_007121.7 CM002894.2 35114153 ~ 35153388 (-)