AMCG00016259


Basic Information

Item Value
gene id AMCG00016259
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13874735 ~ 13879998 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016259
CAAAATAGCGTGGGGGGAGAAAATACAACATTGAAATGTATGGGTCCCTGCTGGCAATTGAACGGGGGGTAGCGGTGCATTGTGGGACGGAAGAGGACCGAGAGGCAATCCCGCTTTGAATCCTCCAGGCCACAGAAAGCACTGTAGCGCACCTTTTTGGAGACGGCTAATAATTTCTAAATATagaacacataaataaattaccacCATTAAACTAAAGTTTGCGCTTGGAGAAAACCCCTTATGTGAAACAACTGGAAGTGAATTGTGCACATTTATGAATCATGCCGAATTTTTGCGCCGCCCCGAATTGCACCAGGAAAAGCACTCAGTCAGACCTGGCTTTCTTCAGATTTCCCCGGGACCCGGCAAGATGCAGACTCTGGGTGGAAAACTGCCGGCGAGCAGATCTGGAAGACAAAACATCAGACCAGCTGAATAAACACTACAGACTGTGTGCCAAACACTTTGAGGCTTCAATGATATGTAAAAGTAGTCCTTACAGAACGGTGCTGAAAGACAGTGCAGTGCCAACAATATTTGACTTAACAAGTCACCTCAATAACCCACACAGCCGACACCGCAAGCGAATAAAAGAGTTGACTGAAGAAGAATTGAGAAAGATGAAAGAAAGGAGACtcgAAGCTTCAGTTGAACAagtggaaacaaacaaagaaaacgaGCCGGCCGAGGGCCCCGACAGTAACGACAACAATGACGATACACCACCACTCACCCAAGAGGAGAAGGAAGTCAGAGATTATCTAAAATCTTTATTCGAAATCATAGTTGTGATCGGCAAGCAGAACATACCCTTGAACGGACACACACAAGAAGAGGAACAGAGCGAGTCTTTCACCCCCACCAATTTCCAGGCCTTGCTGGAGTACCGGATTAATGCGGGGGACGAGGTTCTGCGCAAGAGGTTTGAGATGGACGCTGTGAACGTTGAGTATTGCCCCTCTCTGCAGCAGAAGCAAATGCTCGAGGTCTGCGAGAGCTGCATCCgtgaggagctgctgcaggagatCAGGGAATGCCGCTTCTTCTCGCTGGTCACGGACAATGTGGTGGAAATCAGCGGGGACTACCACCTCCCCTTGTTCTTGCGCTTCGTGGACCAGTCCAACTGCCTGCGGGAGGAGTTCATTGGGTTCCTGCCCTGTGAGGGAGACGAGGAAGCCCTGACTGAAAGACTCCTGTCTGAAATTACTGGGAAATGGGGCTTGAACATGGAGCACTGCCGAGGCCAAGCCCACGTCAGCTGTGGAGTGTTTGCAAGCAAGATGAAATCGGTGGCTTCCAAGCTGATGGAAAAGTATCCCATGGCAGTTTATACTCCTTGCTCCACTTGTGCTCTGAACATTTTTCTTGCAAATTCGTTGCCCTTTACTGGGGTGCAGGTGGTGATGTCCACTTTGAAAAAGATTGACGCCTTCTTCAATAAATCACCTCTACTAAAGGCTGAACTTGAGCATGCCATTTCGATCTTCTACCAGAGCAATCAGGAAAAGGCCAGTGAACTTAAAGAGGTTTGCCGCAGCAGCTGGACAGAGAGACACGATGCTTTCGAGTTAGCAGTGTACCTCTTAGAGTCGCTCCTCTTATGCATGGATAGCATTCACGATAATGAAGATTTGAAGTGGAATGATCAAATTACCTTTGAAGCGTACATGATTTCTGAGACATTAGCAGACTTTGAGTTTGTAGTCACCCTTGTGGTCTTGAAAAATGCGCTGTCCTTCACTAGGGCCTTTGGGAAGAACCTGCAAGGGCAGACCCTGGATGTGTTTTTCGCTGCCAGCAGTTTAACTGCAGTCTTGCACTCCCTCAATGAGGTCATGGATAACATCGAGGTGTACCACGAGTTCTGGTTTGAGGAGGCCATCAATTTGGCCGCTACGATGGAAATCCCAGTGAAGGTGCCCCGATTGTACCTCAGGAAGCAACGAGCAGAATACGGCTTAGAAGTTCAGCctgaaagttattttaaagagtTCCTAAGCATTCCAGTTGTGGCACAAGTTATACAAGAACTCAAGGATGTATTTTCAGAAAACCATTTGAAAGCTCTAAAATGCCTGTCGCTTGTGCCGTCTGTAATGGGGCAACTGAAGTTCAACACATCGGAGGAAAACAATGCAGACATCTACAGGAACGACCTTCCAAATCCAGACACGCTTCCTGCCGAACTCCACTGCTGGAGAATTAAGTGGAAACACAGAAGTAAGGAGATCAGTCTGCCTTCCACCATCTATGACACCCTGCAGCTGTCAGAAGTGAAGTTCTTCCCCAACGTGTACTCCTTCCTCAAAGTGCTGTGCACCCTGCCGGTGTTAAAGCTGGAGAACTCCAAGTACGGAATCGCACGGAAGCGCCTGCAGGCCTACCTTACTGACACGCCTGTCAACCACCGGTCCAAGAGCCTGGCCCTGCTCAACATCAACTATGATGTTAAGCATGATTTAGACTTCATGGTTGATACCTATATTAAACTTTACCCAGAAAAGGAGGAAGAGTGACACAAAACATGGAAGATTTTAGCACTGTCGTCAATTAcgcatgttgttttttgtttagtttttttgctttacTTTCTTAAGTaattgttctgttattttattttaaaactgagaaAACTAATATATTACAGTCAGACGATATAATTTAAAGTCTTGAACTTTCTAGATTAAACAGTGTGTTTTTCCATCGCTTTGTAGTGCATCCTTTTGTACAggttatgctttttttttttactcttgtagtacaaaaattaaaatacgaATGGAGTGGAGCATATTCAGCTGTAGATATAGTTGCTTCGGTCCTACAATTGTGTGAGAACATGGGAACCAATTAATTTTTACATTGagatatttttatgtttgtgtattcagtttttttattttaatgttagtATGGCCTACATCTCAACTGGACCAACCcctcaattaaatgtaatagttATCATATGCTGAAAtagtttaaactgttttaattttcacataTGGAAGCTGATTTTATAACTATACATTTAAGTTTGTAGATGACaaatctttaaacaaaatgatgatACTCTTTGATAAGTGTATCCATTTCCTGGATAAACAGGTTGATAATGGCTGTGTGTTTTCCTATCATATTCTTcctacaagaacaaaaaacatttaacttacAAATGTgggtttaaaaattaaatgcagtgtAAAGATGCACACTATATACTTAATACTGGTGAAATACTTAAGTCTGTAAAAGCTAATGGATCCATTCTGCTTTGTGTTCTACCTAGATTGGAATAATTAGATGTATCATTAAATGACAAATTGTTGCGAAACAAAGGTTGTATTGAGAGTGGTATGTTTAGCTTATTTGCTGATAGAAAACAGTGCAACAACCATATGCAACCAGTTCATCGTGGAAATGGgaagtttttgtgtttgtacttCAAAGAACATCAGATCCATAAATTCACCcacatgaattaaaaacatcaatttgAACGATTAACtgaatgatatatataaaaataaataaaagttgtatgATGTAACATTGAACATTGTACTCTGTgctaaataaagtttttttgttttgtttttaatccaccattgtgttgtttttaggAGATTTATATTTCCGCAAACTTACTGGACATTTTTATCACCATGTTATTCAAGAAAGTGATTAATAAAAACGTAATTATATTCACAATGTACAGTGCGACTcatgtttgcatttgttgtATTTAGACCTATAGGTATTGTGCA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016259 True 3770 mRNA 0.42 5 13874735 13879998

Neighbor

gene id symbol gene type direction distance location
AMCG00016258 NA coding downstream 687 13859333 ~ 13874048 (-)
AMCG00016257 wnt11 coding downstream 34696 13829760 ~ 13840039 (-)
AMCG00016252 NA coding downstream 199203 13655038 ~ 13675532 (-)
AMCG00016251 NA coding downstream 279584 13584907 ~ 13595151 (-)
AMCG00016245 NA coding downstream 292069 13562171 ~ 13582666 (-)
AMCG00016262 NA coding upstream 32924 13912922 ~ 13921956 (-)
AMCG00016263 NA coding upstream 56625 13936623 ~ 13936850 (-)
AMCG00016267 NA coding upstream 76769 13956767 ~ 13970852 (-)
AMCG00016266 NA coding upstream 132698 14012696 ~ 14021948 (-)
AMCG00016268 NA coding upstream 206956 14086954 ~ 14132654 (-)
G12373 NA non-coding downstream 215076 13657443 ~ 13659659 (-)
G12358 NA non-coding downstream 235145 13638303 ~ 13639590 (-)
G12359 NA non-coding downstream 235585 13627255 ~ 13639150 (-)
G12235 NA non-coding downstream 774511 13097991 ~ 13100224 (-)
G12096 NA non-coding downstream 1236037 12638493 ~ 12638698 (-)
G12585 NA non-coding upstream 547627 14427625 ~ 14428817 (-)
G12594 NA non-coding upstream 551614 14431612 ~ 14436531 (-)
G12595 NA non-coding upstream 583619 14463617 ~ 14463823 (-)
G12702 NA non-coding upstream 1313204 15193202 ~ 15193641 (-)
G12707 cntn5 non-coding upstream 1537025 15417023 ~ 15417518 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 315551 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 1004175 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 1545702 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 1927413 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 2093188 11766152 ~ 11781547 (-)
AMCG00016281 NA other upstream 540358 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 905200 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 2590613 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 2978543 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 2986320 16866318 ~ 16870002 (-)

Expression


Co-expression Network