AMCG00016280 (sim2,LOC108234774)


Basic Information

Item Value
gene id AMCG00016280
gene name sim2,LOC108234774
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14306299 ~ 14324175 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016280
ATGAAGGAAAAGTCTAAGAATGCTGCGAAGACAAGacgagaaaaagaaaatggagaaTTTTATGAACTGGCAAAATTATTGCCCTTGCCTTCAGCCATCACCTCCCAGTTGGATAAGGCTTCGATCATCCGACTGACTACAAGCTACCTGAAAATGAGAGCTGTGTTTCCCGAGGgTTTAGGAGATGCTTGGGGACAGCCGGCACGCATTAGCCCATTGGACAACATGGCAAAAGAACTGGGCTCCCACCTGCTTCAAacGCTGGAtggctttgtgtttgttgtagCTTCTGATGGGAAAATCATGTACATCTCTGAGACAGCCTCTGTCCACCTGGGATTGTCACAGGTGGAGCTGACCGGGAACAGTATCTACGAGTACATCCACCCCTCTGACCATGACGAGATGACAGCGGTCCTGAGTGCCCACCAGCCTCTGCACCCTCACTTCCTCCAAGAGTATGAAATGGAGCGGTCCTTCTTCCTGCGTATGAAGTGTGTCCTGGCCAAACGCAACGCAGGCCTGACCTGTGGAGGCTACAAGGTGATCCACTGCAGCGGCTACCTGAAGATCCGCCAGTACATGATGGACATGTCCCTGTATGACTCCTGCTACCAGATCGTGGGGCTGGTGGCGGTGGGGCACTCGCTCCCCCCCAGCGCCATCACTGAGATCAAGCTGCACAGCAACATGTTCATGTTCCGGGCCAGCCTGGACCTCAAGCTCATCTTCCTGGACTCTAGGGTGGCAGAGCTGACTGGCTACGAGCCTCAGGACCTGATAGAGAAGACCTTATACCACCACGTCCATGGCTGTGACGTATTCCATCTGCGCTACGCCCACCACCTCCtgctggTAAAAGGCCAGGTCACCACCAAGTACTACAGGCTGCTGTCCAAGCATGGGGGCTGGGTGTGGGTGCAGAGCTATGCCACCATCGTACACAACAGCCGCTCCTCGCGCCCCCACTGCATCGTCAGCGTCAACTACGTCCTCACGGAGATCGAGTACAAAGACCTGCAGCTCTCCCAGGACCAGACCAGTGTGTCGAAACCCGGGATCCCCTACCGCAGCACCATGACTACCTCACAGGACTCCCGAAAGCAACTCAAATCCAAAGCAGTGAAGATCAAAACCAAACTCAAAACGGCTCCCTACCCACAGCACTACAGCTCATTTCAGCCAGACAAACTGGAGTGCACCCCCCAGTCCGGGAGCTGGAAGGAGAGCCCACCGTACAGCATGGTCCCCAGTCAGGATCAGGTCGCCGTGCCCGAGGGTGGGGATGTGCTGTGTGGCCCCCCTTATGGACTGGCCTTCTCCTACCCATATGGACACTTGCCCGTGGAGCCCCCTGCCCTGGTGGGAAGGAAGACGCCCTTGGCCTCCAAGATTCGGCAACAGCCCCAGAGCTCCCCCTGCCAGGCGGCCCGGCACCTCCTGACCTCCCTGCAGGGCCGAGGGGAGACCCGCTGGAGTTGCGCCAACCCTGGCCTGGCCCGCAGCTCCTCCAAACCTCAGCAGAGCCATACGGCCACTGCCCCTCCACATCCGGCCACAGCAGCATACCCAGGGCCGGGGGCGAACAGAAGATACAGTGCCGAAGCAATACCTGAAGGCTTTTCCAGCTGCTCAACCTCCAGACCTAACAGCAGGTTCAAGGAAGAGCCTTATGAACATAACACGGTTGGGCAGAACAAAATAGAAGCCCGGCTACACACTCCTCAACAGGTCACTAAAGACGACAACAAGACGCAGTTCATCCGGGACCCAAAGGAAGCCCTGGGCTGCGTGGAAAAGCCCTTCTCCAGCTCTCTGAACAGCACCATGGCCGGCAAGGCCAACTGCGAGCACCCCAAGCAGCTCAACACACTCAGCCAGCACTTGCCAATGCAGGTGGTATTTGAGCAAACGAGAAGGATCTGCATGAAGGAGCCTCAATATGCACACCTGGCTGAGCATGCATCCTTAGAGCAAATGGACAATGGCGAACGGGAACCCCCCAAATTAATGGAGCAGGAGAGCACAGAGGAGCAGAAGATGTTCATGGGAATGGGCTTGGCGGGACAAGCTCCATATGTGTCTCTGAACTTCCACCACGTCTTGGCCAAGCATAGCTCCTTCCAGGCGCCGCCATATGCACTGGCGGGCCATTTAACGGACAATTACAGCTACAGAGGGGAGGAGATGAACCCATACCTTTACAAAAGCCAAAGCCCAGCTTCCAGCTCCTCGCCCGAGACTCACAGAGAAATCCCCCATTACATCGGAACGTCCGTAATCATAACCAACGAAAGGTGA

Function

symbol description
sim2 Predicted to enable DNA binding activity; DNA-binding transcription factor activity; and protein dimerization activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription regulator complex. Is expressed in diencephalon; midbrain; pharyngeal arch; and presumptive diencephalon. Orthologous to human SIM2 (SIM bHLH transcription factor 2).

NR:

description
PREDICTED: single-minded homolog 2

GO: NA

KEGG:

id description
K09100 SIM; single-minded

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016280 True 2301 mRNA 0.56 11 14306299 14324175

Neighbor

gene id symbol gene type direction distance location
AMCG00016277 NA coding downstream 36984 14268166 ~ 14269315 (-)
AMCG00016276 NA coding downstream 38484 14267636 ~ 14267815 (-)
AMCG00016274 NA coding downstream 48153 14233698 ~ 14258146 (-)
AMCG00016275 dyrk1a,LOC108435291 coding downstream 107140 14192347 ~ 14199159 (-)
AMCG00016268 NA coding downstream 173645 14086954 ~ 14132654 (-)
AMCG00016284 NA coding upstream 59725 14383900 ~ 14389479 (-)
AMCG00016283 tiprl coding upstream 65334 14389509 ~ 14393661 (-)
AMCG00016282 NA coding upstream 113213 14437388 ~ 14456052 (-)
AMCG00016287 NA coding upstream 253682 14577857 ~ 14591958 (-)
AMCG00016289 zpld1,LOC105030973,LOC103372413 coding upstream 385213 14709388 ~ 14733458 (-)
G12373 NA non-coding downstream 646640 13657443 ~ 13659659 (-)
G12358 NA non-coding downstream 666709 13638303 ~ 13639590 (-)
G12359 NA non-coding downstream 667149 13627255 ~ 13639150 (-)
G12235 NA non-coding downstream 1206075 13097991 ~ 13100224 (-)
G12096 NA non-coding downstream 1667601 12638493 ~ 12638698 (-)
G12585 NA non-coding upstream 103450 14427625 ~ 14428817 (-)
G12594 NA non-coding upstream 107437 14431612 ~ 14436531 (-)
G12595 NA non-coding upstream 139442 14463617 ~ 14463823 (-)
G12702 NA non-coding upstream 869027 15193202 ~ 15193641 (-)
G12707 cntn5 non-coding upstream 1092848 15417023 ~ 15417518 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 747115 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 1435739 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 1977266 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 2358977 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 2524752 11766152 ~ 11781547 (-)
AMCG00016281 NA other upstream 96181 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 461023 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 2146436 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 2534366 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 2542143 16866318 ~ 16870002 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000203_00051348_00060939 SIM2 coding CI01000203 null 50985 ~ 61009 (+)