AMCG00016302


Basic Information

Item Value
gene id AMCG00016302
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15140361 ~ 15142142 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016302
ATGTGCAAAGAGGAGGAGCACCAGCTGCTGTGCCCCAACGAAAAGGTGCCGTGCCTTAACTCTGCATATGGCTGTCCCTTCTCCATGGCCCGCTGCAAGCTTGCCAAGCACCTGGAGATCTGCCCCGCCAGCATCGTGTGCTGCTCCATGGACTGGAATCGCTGGCCTATTACAGAAACAGACACTGCCTTATACAAGAATGTCATGAAAGACTCCCATTCTGCAGAACAGCTGGAGATATGTATGGCTCTAAGAGATCAAAAACTCCTCTTTAACTCTCTGAAAATGAAATCTATTTTCCCTGAGCTGGTAGAGCACGTTGAGGAACCTACGTCTTCGGACCTTGAGGGGGCAGTGGGAGGAGTGGCACTGGAAACCGGGGAAAGTGCTTTGTTCTCCAACAAGCTCTCAGATCAAAGCATGATTGATTCTGCAATGGAAGGCCTTACACAGGAGGAACGTGAAGCTCTAGCCAAGGATAAAGATGTCTGTGATTTGGGCAGCTACAACACCTGGGAAATGATGTTTAGTAAAGAGCTGAGCAGTTGTAAGCACACAGTTAAAGCTTTGGAGAAGAAGGATGGAACTACtgatgaaaaagaaatgatGGCTTCAAGTAGCAGGCAGACAGACCAACAGGAAGACTTGAAGGTAAACCAAGAGCCTGAACATAACACAAGTGATGACCATGGGAAGACAGGCTTAGCTCCCTGGCAGGATGGAGTCCTTGATAGGCTGCGAAAAGAGTCCAATGTAACTGAATTCAATATGTATCTGGTGCATCACGGGAGAATGCTGATTCGCTTTGGACAGATACCTGCCTGCACCCCCAGAGAAAAAGACTTTGTCTACGGAAACCTGGAACCCATCGAAGTGAAGACACTGTGCACATTCAAAGTTCCCACCAGCTACAGTAAAAAACGATCTTGCGTTGATGACCGGTTTGGGGGTGTAATTAAGGAAACTAAGGCAGTAGACACATCTGATTTGGGGGTGTCTGATGATGACATACCACAATGTGATGAAATCCGTGCTACTTTACTGTGTTCTTTGGAAAACGAATTAAGGGGTCACAGTATTTCTGAAACTGTGGCAACAGATGGCCTTGTTGTAGACTTTGGCACCCAGACCTATGACTTCAAAACAGCCCCATTCAAGCAAGAGTCTACACTTGCAGACATAGTTGGAGACCCATCATTGACCCTGAATCTGCAGGTTCAAACTGAGTGTGTGACCCTGAGGCACAACAAATCCAGCTCGGCATTCACTTTCATGTGCAACCACATGTTCAGACGTGATGAGTTCCCTTCGCACTTCATGAACATCCACTCAGATATCCAGAGTTGTCTGAATGGCTGGTTTGAGCAGCGATGCCCTCTTGCCTACCTTGGATGCACCTACACCCAGAAGAAGTTCCAGCCATTCAGACAAAGGGCAACTGTCACTTACAACCAAGACCTCAGCACCTTCAGTCTCAGGCCAGAAGTTTCAGCTCTGCTCTTTGAGGGGGTGAAAGCCAACCCTGCCACCAAGAAACGTGCAAGGAACCTGGATTCTCTGAGCCGTTTGCCCTTTGAGATCCTCCAGCACATTGCTGGGTTTCTGGACAGCTACACCCTCTCCCAGTTCTCCCAGGTCTCCCAGTTAATGAGGGAGGTGTGCAGTACTCTGCTGCAGGAGAGGGGAATGGTCTCCCTgaaatgggaaaagaaaaaatactccCATGGGGGCTTCTCCTGGAGAGCCAGAAAGAAggcaagtcaaacacacaccaccAACTGA

Function

GO: NA

KEGG:

id description
K10315 FBXO40; F-box protein 40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016302 True 1782 mRNA 0.48 1 15140361 15142142

Neighbor

gene id symbol gene type direction distance location
AMCG00016303 NA coding downstream 502 15137408 ~ 15139859 (-)
AMCG00016294 NA coding downstream 289248 14849850 ~ 14851113 (-)
AMCG00016289 zpld1,LOC105030973,LOC103372413 coding downstream 406903 14709388 ~ 14733458 (-)
AMCG00016287 NA coding downstream 548403 14577857 ~ 14591958 (-)
AMCG00016282 NA coding downstream 684309 14437388 ~ 14456052 (-)
AMCG00016304 NA coding upstream 114 15142256 ~ 15358334 (-)
AMCG00016310 NA coding upstream 414727 15556869 ~ 15564100 (-)
AMCG00016308 trpc6a,LOC108429885,LOC108264040,LOC107691992,LOC107713306 coding upstream 435291 15577433 ~ 15596800 (-)
AMCG00016309 NA coding upstream 478914 15621056 ~ 15624452 (-)
AMCG00016316 NA coding upstream 592954 15735096 ~ 15740346 (-)
G12595 NA non-coding downstream 676538 14463617 ~ 14463823 (-)
G12594 NA non-coding downstream 703830 14431612 ~ 14436531 (-)
G12585 NA non-coding downstream 711544 14427625 ~ 14428817 (-)
G12373 NA non-coding downstream 1480702 13657443 ~ 13659659 (-)
G12358 NA non-coding downstream 1500771 13638303 ~ 13639590 (-)
G12702 NA non-coding upstream 51060 15193202 ~ 15193641 (-)
G12707 cntn5 non-coding upstream 274881 15417023 ~ 15417518 (-)
G12743 NA non-coding upstream 404908 15547050 ~ 15605487 (-)
G12807 NA non-coding upstream 682769 15824911 ~ 15825237 (-)
G12809 NA non-coding upstream 686624 15828766 ~ 15829026 (-)
AMCG00016293 NA other downstream 348392 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 713071 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 1581177 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 2269801 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 2811328 12323161 ~ 12329033 (-)
AMCG00016327 NA other upstream 1328469 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 1716399 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 1724176 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 2121459 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 2395892 17538034 ~ 17541342 (-)

Expression


Co-expression Network