AMCG00016315


Basic Information

Item Value
gene id AMCG00016315
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15804860 ~ 15824266 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016315
ATGAAAAAGTCGGGTCACGTTGCGGATACTAGGAGATTTTACATGGGCCAGCACCAAGTCTGGAGGAAGAAGAGCAATCCAAACCACCTGATCTGGAAGGATCGGAAAGCAAAGAAAACCATGGAGGACCTGCCAACAGAAAGGCACaCAGTGGATAAGCAGCTATGGATTGGAGACTCAACTTTATCTATGGATGAAGACATATTACAAGCACTGGATGCTTTTGTACCAGATGGGCCTCCACTCTCTGAAAAGCCCAGTGTGCTTTCACATTCCAAAGAACTGAAAAATGCCAACCGTGGGCACAAACCTGATAGAGTGGTACCTGAAACTGAAAGCCTGCACTTTACATGGGTTAAAAGTGATATAAAGGCAGATTTGGAATGTCAAGAAAAAAGTCATTCTAATCAAAGAACTGTTCCAGACATTCCACAGCCGGAAAGGTCTCAGCTTTGTTTGGGAGCTTCGGAAGACATTGCTAAGAAGCTTGTATTTAGTGAGTATTCAGTGAACAAGAAATCCCCTTCAGAAAATTCAAGACCGCAAACTAAGCATAAAAGACGGAGGCCTTGTTCATTATCAAGCGCTGAGTCAAGTGAGTCACAAGGCCCTTCATCTTCCAAGCGAGCGTCTTTGctcaaaaaaacatctacaagAACAGTAAAATCCAGAGCAAACGACAATGGGCAAAGACTTCGACAAAGGGCTTTCGAGACCAAAACATTTACTTCCATTTCCCAGAATCCCAACATCTCTCTGAACACGTCAAAGGATTATATTCTGTTCAGCTCCACACACCTAGCTGTAGCTCTGCAGAAGAAGAAACTGCAGATTGAGCACCTCCCCACGGCGAACCTGTCTGCATCTGTGCTGACGCCTCCCCCTGGGCTGGACCTCAGCAGGGCTGACTGCAGCGTGCTGGGCAGCACTCCTACAGACATAGGACATAGTATTCACTTGGCTCTCCCTGCGGAGCAGTCAGACAAGCTGCTGCTGTCAAGCTGGGGTCTGCCCAAGCCGGTCCTGGACAAGTACCAGAGCCTTGGCGTGACCCGCATGTTTGAGTGGCAAGCCGAGTcTCCTACCAGTGCTGGGAAAACATTAGTTTCTGAATTACTGATTTTAAAAAGGGTGCTGGAGACCAGAAGAAAGGCTCTGTTCATCCTCCCTTTTGTGTCCgtggcaaaagaaaaaatgttttaccttcAGAATGTATTCCAGGAGGCAGGCGTCAGGGTGGAGGGTTACATGGGCAGTACCTCTGCTGCCGGGGGATTCTCTTCTCTCGACGTGGCTGTGTGCACAATCGAGAGAGCCAATGGGCTCATTAACCGGCTTATTGAAGAGAACAGAATGGACTTATTAGGAATTGTTGTGGTGGATGAGCTGCACATGGTGGGTGACTCCAGCCGTGGATATCTGCTGGAACTCCTGCTTACCAAGATACGCTATGTGACACAGAAGGCATCATCCAGAGATTCCTCTGAGAGCAGTCTGTCCCTCAGTGAAGGGGTGCAGATTGTGGGCATGAGTGCCACCTTGCCCAACCTGTCTTTATTGGCCGAGTGGTTAAAGGCTGACCTGTACCACACTGATTACCGACCCGTGCCACTGATGGAGTGGGCAAAGATTGGGGATAATATTTATGATGGCTCTATGACTTTGGTTAAGGAGTTTAAGCCTGTCCTACAAGTCAAGgGCGATGCAGACCACATTGTCAGTCTGTGCTTTGAGACGGTTCAGGGTGGCCACTCCGTGCTCCTGTTCTGTCCTTCTAAGAACTGGTGTGAGAAGCTGGCCGACAGCATCGCCAGGGAGTTCTATAATCTCAGACGCCGGGTTTCACACGCTCAAGAAGGCAAGGAAACCGATGCCCTTTTCTTATTGTTTGTTGGGTGCTCTATTACAGGAGGAGGTGGAAATGCTGACCCCCAGCCCCTGGCCCTCAGTGAGGAGGGTCTCCAGGATGTCTTGGCCCAGCTGAAGCGCTCTCCTTCAGGGCTGGACTCTATCCTGCAGCGCACCGTGCCATGGGGGGTGGCCTTCCATCATGCAGGCCTGACATTTGATGAGCGAGATATTATTGAAGGTGCCTTCCGTCAGGGCTACATCCGAGTCCTTGCTGCCACCTCGACGCTGTCTTCTGGGGTCAACCTCCCTGCGCGGCGCGTCATTATTCGGACACCCATCTTCAATGGCCGCCTCCTTGACATTCTGACCTACAAGCAGATGGCTGGGAGAGCTGGCCGCAAAGGGGTTGACACTATGGGTGAGAGTATCCTTGTGTGCAAAGAGTCTGAGCGAACAAAAGGAGTCACTCTTTTACAAGGGTCCCTCAAACCAATCCGCAGCTGTCTCATCCAGAAGGAGGGGGAAGGGGTCACCACTAGCATGATCCGAGCCATACTTGAGATCATTGTTGGGGGTGTTGCCAGCACTCCTGAACATGTGAAGATGTACGCTTCTTGCACATTGCTGGCAGCCAGCCTGTCTGCAGAGAACACAGGGGGCACTACTCCCAAAGGGAAGAGCGACCAGCACAGGGGATCCATCGAGTCATGTGTTGACTGGCTCATAAAGAACGAGTTCATCCAGATTCAGGAAGAGGGAGGCAAGGAACTGAAAAAGAGGTACTGTCCCACTCATTTGGGTGCCGCCACACTGTCCTCCTCCCTCTCGCCTCCTGAAGCACTGGGGATATTTGCAGATCTCCAAAGGGCAATGAAGGGCTTTGTGTTGGAAAATGACCTCCATATTTTGTATCAGATTACCCCAGTGTATGGCGAGTGGACTACAATTGACTGGTACCAGTTTTTTTGCCTTTGGGAGCATCTGCCCACTTCAATGAAGCGTGTGGCCGAAATGGTTGGAATTGAGGAGGGATTCTTGGCGCGCTCCGTCGGTGGAAAAATAATTGCTAAAAACGAAAGGCAGCATCGGCAGATGGCGATTCACAAACGCCTAGTGTTGTTGGATCTCATCAGTGAGGTTCCTCTGGAAGCTGTTGCCAAAAAATATGGCTGTAGTCGAGGGCAGCTTCAGTCTCTACAGCAGTCCGCTTCCACATATGCGGGTATGATCACGGTGTTCTGTAACCGCCTGGGGTGGCACAACATGGAGCTGCTGTTATCCCAGTTCCAGAGCCGACTCAGTTTCGGCATTCAGAGGGAGCTGTGTGACCTTGTGAGGATCTCCCTGTTGAACGCTCAGAGAGCCCGTGCGCTCTACAACGCAGGGTTCATCACGGTGTCCGAGCTGGCGAGGGCGAGCGCTGAGGACGTGGAGGCAGCGCTGAGGAAGGCAGTTCCGTTTAAAAGCTCTCGAAGAGCAGTGGATGAGAGTGAACATGAAGCCCAGGAGAGGAGGAATACACGCTGTATCTGGGTCAGCGGGAAGAGGGGCCTGACTGAGAGAGAGGCGGCCCTGCAGATTGTAAGAGAAGCCAGGCAGCTCCTCCAGCAAGACCTGGCCCTCCTTGGGATAATCTGGGACCCCGACACTCTTCCAGAGGAGAGACTGCAGTCTGCCGCGGGAGAATTACTGTCTGCCAAGCAGGGAGACGCACCGAGGGATCCCTCCTCCTCACACAGTGAACGCCCCCCCACCATGAAAGAGGCATCACACTCAGGAGATGGTGCTCAGACAGAACGTTGCAAGAAAAGTGGCAAAGATGAGTCAGATGTTGTAACTGTTAGCAATGGGAATGATTCCGCCAATTCCAAATTAAATGAACTGAAGTCTTCTGCTCACCCGACCTGGCCCAAAGAAAGAGGTGCTGGAAACCAAAGTGtggaacataaaacaaaagagtTTATTGTACTTCAGTCAGTAGAGACTAAGGAATGCTCCTCTGTGACTCCTGTGTCTGCAGCAGCATCAGTGACATCTAATAAATCCTCAGCTGTAAATCCAGGAGAAAGACGGCTGCCCTCTGGCTCAGCTGCCCTGTGCAAACTTGACAAAACCGAGAACGTAGTTAAAAAATatcatattgaaaatgaaatggttgTAGAACAATCATCTGAAGTTCTTGGCAGATCTTCAACAGACAAAGAATCTGACATATTAACTGAATCATTAAAAGCCCACATTTCCTCCAACATGAGTAACatgcttaatttaaaacatgggaGAGTTAGTCCGTTCTCTCTGAACCAGGCGTCCAAGCGTAGGAAGATGGGCTGTGAGACTGGAACTGTTGAGCATGAtgaaatcacaaacaaatgTGTCATTTCTGAGGCACTTGTAAGTGTAGAGACTCTGGTAAGGGCTAAACCTCCtggaaaacaagacaaaaacgTTCTTCCACTGTCCGTGAATAATTTCCCATCTGTCAGCGGTGAAAAAAAGAATGAGAAACTGGAACGGTGCTGCATTGAAAACGGCTGTGGGAAACCGCTTGAAACCGAAAATGGAAAAAGTGCTGGTGAAGTCACACAGACTGATCTTAATATAAACCAGTCCAAGATGGTGAGCGGTAAGGGTCTTCTGGAGAGACGTGCAGCTAATTTATTACCAAAACggcaaactgaaaatgaattgtcCTTCCAAACTGATCAAATGTGCAAATCTCCTGACCTGTATGGACAGGAGGAGTTTGGCGAGAGTTTTCAGCTTGATACACAAACTGAGAGAATAATCATGCAGCGGGATTTGACGATTCCTACCTCTGACACGCATCTGAAAGGAAGCTCACCTGGAAAAGTACTTGAGAAAACCTGCAATACTATTTCAGATCCTGCCAACCTGAAGATGGAAAATCAAACCAATGCAACTTTGTTGAGCGAAAAGCTTCCGCCTGAACCTTCACAAGAAGTCGACTGTGATCAAaggattaaaaacaattctCTTCCCAGATATAACACCTCCCTGACCGACACACAGCTCAGAAATATCCTGGACTACTGCACTCAAGCTGTAAATCAAACGGGTCACTCGCCTGTATTgatgcagaaaacaaatacgGCCCTTAGTGGAATCCACGCATCACAAGGCAATCCGGTGTCTTCAGAAAATGCTGCTGAAACGAGTCTGGATGGGAGTGGGAGCTCCCTATTCGACAGTCTCTGCGAAAATTTCCCAGATGCTGTCTTGGAGGAGGAAAGCTCGGAAGCATTGCCTGAGAGGTTAGAAGGCAGAAAGGAGGGTATTTCTTTTCCTCCTCAATCTGCAATGAAAGAACAACAACCTGTGAATCAAGAAGCAGTCCAATGGGGTGAATCTTCTTTCAATTTATCAGACTTTGGGGATTCTTTTCAGATACACGAAGCGCAGTACATCGAGAGACTGAATGCTTTAATTAGCAGTGATGATGAAATAACCTCGGGACAAACCAAACCACTAGAACCCATTCCCATGAATTGTAATAGACCTATATCTGATGTGAACGTGTCTAAATCTCCAGAATCTGAGACCCATTCCGAATCTAAGTCTTCAGAAGATATGTTATTAATTGCAAATAAGACTTGGTCAGACACGTCTTTCCACTTAAGCCCTGGCATGCAAGACGCTCTTGACCAATGGCCTAGCCTCTCGGGAAACTATGCAAGTAGACATGAGATCCCGGTAAATGCCAACCCAGAACAAAATGCTGCCTACAGTAGGTCTCCAGAACCAAGCAGACTGATCCCAGGACAGTGTTTAGCTGTTGCAGATCAGACAGCAATGAATACTGTTTCCCCATTTCTGGATCTTGAAGCAGAATCTAGACCTGCAAGCCATAATGAACTTATTCCTCCAACTCCAGAATCCACTGCAGTCACTCCTAGGATAAAAATGACCATGTCTTCTGTGAAGTCtgataaatgcaaaaacaaaagaaatatgTCTAACCGGAGCTCGTCACATGTTACAGAAGATAACCAGAAACATCCACATCCCAGTGTTAAAAGATTGCCTCTATCAGACTTGGATGACTCTCTGGTTGGTGAGGGTTTTTCACTGCAGTTGTCCCAGGACGCGTCAGCCTCCGCTTCAGTCCCTGGCAGCCCAGAAACGTTCACAATCATTGACGTGGCCAGTGATCTGACACTTTTCCAAACGTTCATCACAGAATGGAAAGCGAAGACAAGGTTTTCCATCGCTGTTGCCTcgcGCTCTAGTCGGAAAAAAACTTCCAGGGAAGACGGGTTTCCTATCAAATCAAACGAAGCTCTTGTCGTCACTGGTATAGCGGTATGCTGGGGTGGAAAGGATGCCTATTTCGTATCCCTGCAACGGGAACAGCCAATCACAGacATAAGTCCAAGTTTGGTTCCTCCACCTCTGGATCAGAACCTATCAGTGCAGGAGAGATTAAAACATGTGCATTCCTGTCTGAGAAGCAGCTCCTCTGGGTCTGAAAGAGTGAGTGTGGTGTACGACTTTAAACAGCAATACAAAGCTCTGCTGCTGTCCTGCGGACTCGCTTTGGAGAGCAGCTTTGAAGACCCAAAGaTCGCGTGCTGGTTGCTGGACCCTGGCTCTAAGGAGCGCACCCTCCATAATATGGTCACCAACTTCACACCACAGGAGTTGCCGTTGCTGGAGGGTGTTGGTGCGGGACAGGGTGTCCAGAGTTTGGGGCTCAGTGCTGACCGCGAGCACTCGGGTCGCTACAGAGCGGCCATCGAGTCTGTGCTCGTCTACGGCATCATGGACCACCTCGGTGTCCTCCTGAGGAAAGACCACTTGCAAGATGTGTTCTGCAACGTGGAGATGCCCATGCACTACTGCCTGGCGCTGCTTGAGTTGAACGGCGTCGGCTTCAGCGCTGCGGAGTGCGACTCGCAGAAGCACATCATGCAGGCGAAGCTGAGCACCCTGGAGGCACAGGCCTACCAGCTGGCAGGACACAGCTTCTCCCTGACCAGCGCCGAGGACGTGGCGGAGGTCTTGTTTCTGGAGCTGAAGCTGCCCCCTAATGGGGACGTGAACGGGCAGAAGAATAAGAAGACTCTGGGATATGCCAGGAGGCCTGGAGCAGGAACCCGGGGTAGAATAGACAAGCAGTTCAGCACCACCAAGGATGTTTTGGAGAAACTCAAACCTCTGCACCCTTTGCCCGGGGTGATTCTGGAGTGGAGGAGGATCACCAATGCCATGACAAAGGTGGTGTTTCCTCTCCAACGCGAGAAACGCCCGCACCTCCGGCTGGGTATGGAGAGGATATACCCCGTCTCACAGACGCACACGGCTACAGGAAGAGTGAGTTTCATAGAGCCCAATATCCAGAATGTGCCAAAGGATTTTGAGATCGAGATGCCAACTCTGGTGGGAGAGAGTCCCCCATCTCAGGAACGAGGCAAAACATTCTCTTCCAAATCAAGgAGATCAAAGATCCCtcgacagttggtgtcacaagCCAAAGCAGTCGGAGAGTCTCCAGGGAAAGGGATATCTTTTTCTGTTAGTATGAGGCATGCTTTTGTGCCATTCCCAGGAGGTCTCATCCTGGCTGCGGATTATTCCCAGTTGGAGCTACGGATTTTGGCGCACCTCTCCCGGGACCGACGGCTCATTCAGGTCCTCAACAGCGGGGCGGACGTCTTCAAGAGCATCGCGGCCGAGTGGAAGATGATCGAATCCGCGTCAATCTGCTATGGAATAATCTATGGCATGGGAGCAAAGTCACTGGGAGAACAGATGGGGATTGATGAGACCGATGCCGCCTGTTACATAGAAACGTTCAAATCTAGATACACAGGAATTCAGACCTTCCTGCGTGAGACTGTCAAGACCTGCGGAAAAAATGgatacattcaaacaatactGGGGAGGAAGAGGTTCCTTCCTGCTATCAAGGACCCGAACCTTCACATTAAAAATCATGCGGAGCGCCAGGCGGTGAACTCGACAGTCCAGGGTTCTGCTGCTGACATTGTGAAAACCGCGACAGTGAACATCCAGAGATGCCTAGAGGAGGCTTTCCCCACAGCGACCAAATCGCACGAGCACCCGGGGAGCCCAGAGTGTCCCAACCCATCAGaCAAAAGACGACAAAGGGCCGTCTCATGCCCGGGTCGGGGAGGGTTTTTTGTTCTTCAGCTGCACGATGAGCTCATTTATGAGGTTGCGGAGGATGATCTCATTCAGGTGGCTCAGATTGTGAAGAAGGAGATGGAATCTGCAGTTAAATTGTATGTGAAACTTCGGGTGAAGGTGAAAGTAGGCCCAAGCTGGGGAAACCTCCTAGACTTGGATATTTAGTTCATATTGTAAATGGGGAAACAAAACCGTGACAGATAGCTTAACTCCTTGgaacactatttaaaatgaaagtggcATCTGTAAAGAAAATGAGAATGTACTGACAGCAAATGAAACCTGTTTGGGTATTGCATTTGGCCATTTCATGACAAAACAGCTGCTTTCTGATAATATTATCACTACAAcagtaatgtattttctctttttttatatataaaatgtacagtaaatattttatttaaaaaaaattgaaatgaacttttgtaatac

Function

GO: NA

KEGG:

id description
K02349 POLQ; DNA polymerase theta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016315 True 8457 mRNA 0.49 33 15804860 15824266

Neighbor

gene id symbol gene type direction distance location
AMCG00016317 NA coding downstream 46837 15742441 ~ 15758023 (-)
AMCG00016316 NA coding downstream 64514 15735096 ~ 15740346 (-)
AMCG00016309 NA coding downstream 180408 15621056 ~ 15624452 (-)
AMCG00016308 trpc6a,LOC108429885,LOC108264040,LOC107691992,LOC107713306 coding downstream 208060 15577433 ~ 15596800 (-)
AMCG00016310 NA coding downstream 240760 15556869 ~ 15564100 (-)
AMCG00016319 NA coding upstream 16993 15841259 ~ 15849112 (-)
AMCG00016321 NA coding upstream 65994 15890260 ~ 15902820 (-)
AMCG00016320 tenm4 coding upstream 96831 15921097 ~ 16030468 (-)
AMCG00016318 tenm4,LOC107740368 coding upstream 232843 16057109 ~ 16061718 (-)
AMCG00016328 NA coding upstream 584089 16408355 ~ 16409278 (-)
G12743 NA non-coding downstream 199373 15547050 ~ 15605487 (-)
G12707 cntn5 non-coding downstream 387342 15417023 ~ 15417518 (-)
G12702 NA non-coding downstream 611219 15193202 ~ 15193641 (-)
G12595 NA non-coding downstream 1341037 14463617 ~ 14463823 (-)
G12594 NA non-coding downstream 1368329 14431612 ~ 14436531 (-)
G12807 NA non-coding upstream 645 15824911 ~ 15825237 (-)
G12809 NA non-coding upstream 4500 15828766 ~ 15829026 (-)
G12810 NA non-coding upstream 5089 15829355 ~ 15829567 (-)
G12811 NA non-coding upstream 10556 15834822 ~ 15835082 (-)
G12812 NA non-coding upstream 10928 15835194 ~ 15836468 (-)
AMCG00016293 NA other downstream 1012891 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 1377570 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 2245676 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 2934300 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 3475827 12323161 ~ 12329033 (-)
AMCG00016327 NA other upstream 646345 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 1034275 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 1042052 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 1439335 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 1713768 17538034 ~ 17541342 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_06006532_06022059 POLQ coding CI01000006 null 6004802 ~ 6022182 (+)