AMCG00016320 (tenm4)


Basic Information

Item Value
gene id AMCG00016320
gene name tenm4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15921097 ~ 16030468 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016320
GAGCagtccccctcccctccccccacccatGAAGCCAATGAGAGCCAGAGAAGGTTGCTAGGTAACTGTGTGGCTCAGCCAACCCAGGAGTCCGACTCCGAAGACGAATTTGCCCCTAATTCATTCTTAGTTAAAACAGGCTCTGGGAACCTCTATGCtcctactactgctactgctgaCGACCAGTCATCGACGTTCCAGAACCACTCCCGGCTCCGGACCCCCCCACTGCCTGTGTCTCTATCACACACTCCAAACCAGCACCATGCGGCCTCTGTCAACTCTTTGAACCGGGGAAACTACACCCCACGCAGCAACCCCAGCCCGGCACCCACCGACCACTCCGTGCCCCCCGAGGCTCCCTCCAGTGCTCAGGACTCGGGCAGTGCCCAGGACAACTGGCTCCTCAACAGCAACATCCCTCTGGAGACCAGAAACATAGCAAAGCAGACATTCCTAGAGACTTTACAGGACAACCTCATTGAGATGGACATTCTTGCATCAGCACGCCGCGATGGTGCTTACAATGACGGGCACTTCTTGTTCAAGCCCGGGGGGACATCACCCTTGTTTTGCACAACCTCCCCGGGGTACCCCTTGACGTCCAGCACGGTGTActcccccccgccccgcccGCTCCCTCGCAGCACCTTCTCCCGGCCTGCCTTTAACCTAAAGAAGCCCTACAAGTACTGCAACTGGAAATGTGCCGCCCTGAGTGCCATCCTCATCTCTGTCATGCTTGTCTTTCTGTTGGCGTACTTCATCGCCATGCACCTCTTTGGCCTGAACTGGCACCTACAGCCGATGCAGAGGCAGATGTTTCAGCTCGCAGAGGACAGGGATAGCAGCCTGCCAGTGCCTACAGACATGGCACTTCCACCACTGGGGAACACGGGTGTAGACCTGCCAGACAGAAAAGGCAAAGGCACAGATGATGGAAAACCTGACAGCATGTTCCCAGAAGACAGCTTTATAGACATGGGGGAAATAGATATCGGGCGCAAAGTCACGCAGAAGATTCCCCCGGGCATATTCTGGAGATCGCAGGTGTTCGTCGATCACCCCATGTACCTCAAATTCAATGTGTCACTGGGAAAAGATGCCTTGGTGGGAATTTATGGAAGAAGAGGGCTGCCTCCTTCTCACACACAGATTCTGTTGATGATTGTCCAAGCAACTGCTATGGAAATGGAGACTGTGTGTCTGGGACTTGTCATTGCTTTCTTGGCTTTCGTGGCCCAGACTGTGGTAGAGTGCATCGATGTAGCCTGCAGCAACCATGGCACCTGTATCATAGGGACATGCATCTGCAATCCAGGCTACAAGGGGGAGAGCTGTGAGGAAGTGGATTGCATGGACCCTACATGTTCTGGCCGAGGAGTGTGTGTCCGGGGAGAGTGTCACTGCTCGGTGGGCTGGGGGGGGCCCAGCTGTGAAAACCCACGAGCGTCCTGCATGGATCAGTGCTCAGGACATGGGGCCTTCCTTGCTGAAACTGGGACTTGCAGCTGCGACCCAAACTGGTCTGGACACGACTGCTCCACAGagATTTGTGCAGCGGACTGTGGTGGACATGGCATCTGTGTGTCAGGCACCTGCCGCTGTGACGAGGGCTGGATGGGCGCTGGCTGTGATCAGAGGGCGTGTCACCCGCGCTGCAACGAGCACGGCACTTGCAAGGACGGCAAATGTGAATGCAGCCCGGGATGGAATGGAGAGCACTGCACTATTGAGGGATGTCCTGGACTGTGTAATGGCAATGGCAGGTGTACACTAGGCCAGAACGGGTGGTACTGCGTCTGTCAGCTGGGATGGAGAGGGAATGGCTGTGATACATCCATGGAGACGGCCTGTACCGATGGCAAGGACAATGATGGagATGGTCTAGTGGACTGTATGGACCCTGACTGCTGCCTCCAGACAACCTGCCACATTACCTCCCTCTGTGTGGGCTCGCCTGATCCGTTGGACATCATTCAAGAGACCCAGCTCCCCTCCACCCAGAACAACCTGCAGTCCTTCTACGACCGAGTGCGCTTCCTCGTCGGCAGGGACAGCACGCACGTCATCCCCGGGGTCAACCCCTTTGATGGAAGCCATGCCTGTGTGATTCGAGGCCAGGTGGTGACTTCTGACGGTACTCCGCTGGTCGGTGTCAACATCAGCTTCATACACAGCCCAGCGTACGGATACACCATCAGCCGGCAGGATGGCAGttttgatttggtcactAACGGAGGGATCGCCATCACCCTGCGTTTTGAGCGCGCTCCATTCATCACCCAGGAGCACACGCTGTGGTTGCCATGGGGACGCTTCTTTGTCATGGACACTATTATCATGCGGCACGAGGAGAACGAAATCCCCAGCTGTGACCTCAGCAGCTTCGCCCGGCCCAACCCCATTGTCTCCCCGGCCCCCCTGACTGCCTTTGGCGGGTCCTGCTCTGAGAGAGGAGCCATTGTCCCCGAGATCCAGGCACTGCAAGAAGAGATCAACATCCCAGGAACCAAGATGAAGATGAGCTACCTGAGCAGCCGCACCCCGGGGTACAAGTCAGTGCTGCGTGTGACTCTGACTCATGCCACCATCCCATTCAACCTCATGAAGGTGCACCTGATGGTGGCTGTGGAGGGAAGACTCTTCAGGAAGTGGTTCCCGGCCGCCCCTGACCTCACCTATTACTATATCTGGGACAAAACCGATGTCTACAGCCAGAAAGTCTACGGGCTGTATGAGGCGTTTGTTTCTGTTGGTTATGAATATGAATCATGCCCTGACCTTATACTGTGGGAGAAGAGAACGGCTGTGCTGCAGGGTTATGAAACAAGTGCCTCTAACCTTGGTGGTTGGGCTCTCGACAAACACCACGCTCTCAATATACAAAGTGGTATCTTGCACAAGGGCAATGGGGAGAACCTGTTCATCTCACAGCAACCCCCTGTCATCGGTAGTGTGATGGGTAATGGGAGGAGGCGCAGTATCTCCTGCCCAAGCTGCAATGGACTTGCTGATGGCAACAAGCTCTTGGCACCTGTCGCCCTGGCCTGTGGCACTGATGGGAGTCTCTATGTAGGCGATTTCAATTATGTCCGCAGGATCTTCTCCACGGGAAATGTCACCAGCGTTTTGGAGCTGAGCAACAGCCCAGCGCACAAGTATTACCTGGCAAGCAGCCCCGTCTCTGGTGCTGTGTACCTCTCCGATACCAACAGCAGGAAGGTGTTTAAAGTGAAGTCTCTGAGTGTGGTTAAGGACGTGGCCAAGAACCTGGAGCTGATCGCCGGCACAGGAGACCAGTGTCTTCCTTTCGATGAGACCCGCTGTGGCGATGGGGGGAAAGCAGTAGAGGCCACCCTCACCAACCCCAGAGGCATCACCGTTGACAAGTTTGGCCTGATCTACTTCGTGGATGGCACCATGATCCGCAGGATTGACCAGAATGGAATCATCTCCACACTCCTGGGCTCCAACGACTTGACATCTGCCCGGCCGCTGAGCTGTGATTCTGTCATGGATATCTCTCAGGTTCGACTAGAGTGGCCAACAGACCTGGCGGTCAGTCCTATGGACAATTCCTTGTACGTGCTGGACAATAATGTTGTCCTCCAGATCTCTGAGAACCACCAGGTACGCATAGTAGCTGGACGGCCCATGCACTGCCAGGTGCCAGGCATAGACCACTTTCTCCTCAGCAAGGTGGCAGTGCACGCCACACTGGAGTCAGCCACCGCCCTTGCCGTGTCCCACAATGGCATCCTCTATATTGCCGAGTCGGACGAAAAGAAGATTAACCGTGTGCGACAGGTTTCCACCAATGGCGAGATCTCTCTGGTGGCTGGAGCGCCCAGTGGCTGCGATTGCAAAAACGACGCCAACTGTGACTGCTACTCTGGGGACGACGGTTATGCCAAAGACGCCAAGCTGAACGCCCCGTCCTCCCTCGCTGTCTGCCCGGATGGAGAGCTCTTTATCGCTGACCTTGGGAACATCCGCATCCGCTATGTGCGCAAGAACAAACCATACCTTAACCCACATAACCTGTACGAGGTCTCCTCCCCTATCGATGAGGAACTCTACCTTTTTGACACCAATGGCAGCCACATCTTCACCCAGAGTCTCATAACAGGAGACTACCAGTATAATATCACCTACACTGGAGAAGGGGACATCAGTTCGGTCACTGACAACAACGGGAACACTTTAAACATCCGCCGGGATGCCACAGGAATGCCACTCTGGCTGGTTGTCCCCGATGGCCAGGTATTCTGGGTGACAATCGGTACAAACAATGCCTTAAAAAGTGTTACAGCTCAGGGGCATGAACTGGCAATGATGACTTACCATGGGAGTTCAGGTCTGCTAGCAACAAAGAGCAATGAAAATGGGTGGACAACGTTTTATGAGTATGACAGCTATGGCCGACTGACCAACGTCACCTTCCCAACAGGCCACGTGAGCAGCTTTCGCACCGACACGGACAGCTCTGTTAGAGTTCAAATGGAGGGTGCCAACAAAGAGGACGTCACCATAACAACCAATCTCTCGGCTTCGGGGGCTTTCTACACTTTACTGCAGGatcaAGTTCGAAACAGTTACTACATCGGCTTGGATGGCTCCCTGAGGCTGGTGCTCGCCAATGGGATGGAAGTGTCTCTGCACACAGAGCCTCACTTGCTAGCGGGGACCGTGAACCCCACAGTGGGCAAGAGGAATGTCACACTGCCCATCGACAATGGCCTCAACCTGGTGGAGTGGAGGCAGCGCAAGGAGCAAGCCCGGGGGCAGGTCACCGTGTTCGGACGCAGACTCAGGGTGCACAACAGGAACCTGCTTTCTTTAGATTTTGATCGCATTACCAGGACTGAAAAAGTCTACGACGATCACCGAAAATTCACCCTCCGAATCCACTATGACCAGGCCGGACGCCCAACCCTATGGTCCCCTAGCAGTCGGCTCAATGGGGTCAATGTCACCTACTCAGCAGGAGGACACGTCGCTGGCATCCAGAGGGGCACCATGTCTGTACGAATGGAGTACGACCAGAATGGAAGGATCGTCTCTCAGATCTTTGCAGATGGGAAATCCTGGAGCTACACTTACTTGGAGAAGTCCATGGTGTTGCTGCTCTACAGCCAGAGACAGTATATCTTTGAATTCGATAAGAACGATCGGCTGTCCTCAGTCACGATGCCCAACGTGGCTCGCCAAACTCTGGAAACCATGCGCTCCATTGGCTACTACAGAAACACATACAAGCCTCCAGAGGGTAATGCCTCTGTACTCCAAGACTTCAATGAAGACGGACAGCTGCTGCAGACATGCTTCCAAGGCACGGGCCGCCGCATGATCTATAAATACGGGAAGCTGTCCAAGCTAACAGAGATCCTGTACGACACCACAAAGATCGCTTTCACGTACGACGAGGCGGCCGGGATGCTGAAGACGGTGAACCTCCAGAGCGAGGGATTCACCTGCACGATCCGCTACCGGCAGATCGGCCCGCTGATCGACCGGCAGATATTCCGCTTCAGCGAGGAAGGCATGGTGAACGCACGCTTCGACTACAACTACGACAACAGCTTCCGGGTCACCAGTATGCAGGCGGTGATCAACGAGACCCCCCTGCCGATCGACCTGTACCGCTACGACGACGTTTCAGGGAAGACGGAGCAGTTTGGGAAGTTCGGGGTCATCTACTATGATATCAACCAGATCATCACCACCGCTGTGATGACCCACACCAAGCACTTCGACGCATACGGTCGCGTGAAGGAAGTTCAGTACGAGATCTTCAGGTCGCTCATGTACTGGATGATGGTGCAGTACGACAACATGGGCCGAGTGGTGGGCAAGGAACTGAAGGTCGGTCCCTATGCCAATACGACTCGCTACTCCTATGAATATGATGCAGACGGGCAGCTGCAGACAGTGTCCATCAATGACAAGCCCCTGTGGCGCTACAGCTACGACCTTAATGGCAACCTACATCTGCTGAGCCCTGGAAACAGTGCCCGCTTAACGCCACTCCGCTACGACCTGAGGGACCGCATTACTAGGCTGGGGGACGTCCAGTACCGCATGGATGAGGATGGGTTCCTCAGGCAGAGAGGCAACGAGTTTTTTGAGTACAACTCCGCCAGCCTTCTAGTCAAAGTCTACAACAAGGTCAATGGGTGGAACATCAAGTACCGCTATGATGGCCTGGGCAGGAGGGTGTCTAGTAAAAGCAGCTTTGGGCACCATCTGCAGTTCTTCTATGCAGACTTATCCAGTCCGACACGTGTCACCCATATGTACAACCACTCCAGCTCTGAGATTACGTCTCTCTACTACGACTTGCAGGGACACTTGTTTGCCATGGAGCTCAGCAGTGGAGATGAGTTCTATGTGGCGTGTGACAACATCGGGACCCCCCTGGCGGTCTTCAGTGGCACAGGTTTGATGATAAAGCAGATTCTTCACACGGCCTATGGCGAAGTGTATCTGGATTCCAATCCCAGTTTCCAGCTCGTCATTGGGTACCAGGGAGGCCTGTACGAGCCCCTCACCAAACTCGTTCACATGGGACGGCGGGATTACGACGCCCTCGCTGGCCGATGGACCACCCCGGATCATGATATCTGGAGAAGaatcaacagcaacagcaacagcattgTACCCTTCAACctgtacatgtttaaaaacaacaaccctatCAGCAACAGCCAGGAGACCAAGTGCTATATGACAGACGTAAACAGTTGGCTGCTTACATTTGGGTTCCAGCTGTACAATGTTATCCCTGGATATCCCAAGCCAGACACCAATGCGATGGAACCGTCCTATGAGCTAATCCGCACACAAATGAAGACCCAGGAGTGGGACAGCAGCAAGTCGGTGCTGGGAGTGCAGTGTGAAGTGCAGAGGCAGTTGAAGGCCTTCGTCAAGCTGGAGCGCTTCGGGCAGATCTATGGTGCCAGCAGCGCAGGGTGCCAGCAGTCGGAGGGGCAAATCCGCTTCGCCTCGGGGGGCTCAATCTTCGGCAAAGGGGTGAAGTTCGCCATCAGAGACGGGCGCGTCACCACCGACATCATCAGCCTGGCCAACGAGGACGGGCGGCGCACGGCGGCGGTGCTCAACGACGCCTTCTACCTGCAGGACCTGCACTTCACCATCGCCGGCACCGACACCCACTACTTCGTCAAGCTGGGGCCGGTGGAGAACGACCTGGCGCTCATCGGCATGACGGTGGGCCGCAGGACCCTGGAGACGGGGGTCAATGTGACGGTGTCGCAGATGAACACCGTGCTGAACGGCAGGACTAGGCGAATCACAGACATCCAGCTCCAGTACGGGGCGCTGTGCTTGAACACCCGCTACGGGACGAGCATAGACGAGGAGAAGGTGCGCGTGCTGGAGCTGGCCAGGCAGCGTGCGGTGGCGCAGGCCTGGGGGCGAGAGCGGCAGAGACTGCAGGAGGGCGAGGATGGCACGCGCTCgtggacagagggagagaagcagCAGTTGCTGAGCGCCGGTAGGGTGCAAGGCTACGACGGCTACTTTGTCATTTCAGTGGACCAGTATCCCGAGCTGTCAGACAGTGTTAACAACATTCATTTCATGAGACAGAGTGAAATGGGCCGGAGGTGACATGAACACAGGGAGGCTGAGTGACAAACATGGACAGCATTGAGGACTACTTGCCAAAGACAGCTGCTTATGTGGCCACTTTTTTTGActgtgttttacttatttttttattgaaaacaaaaaacagacaaaaaaaaactgttctatACAGTCGCACTGTATTTACTGAAGAGTGCccaattgtttttcatttttattttcgaCAATCCATTGAAGAGGGATTGCAAGAGGATGAAGTTCGCGATCTAAGtgacttgttttttattttattttccgtCCCTGTTGGTGTGTCTGTTAAAAAGGAATCAAAATGGAGTGGTGTAAACGCATTATATTCACTGGTTTGCTCTGCCTCCTGTGTGAAGCAAAGTGTGATCCACAAGCGTGTTTCATTCCAGGCTTTTTCACGCTCCTGACAAGAAGAAGAGGCGTTCTCGTTTCCTCGCTTCTTTTTATACTTGAAAACCCATTTGCCACTTatggggggaagaaaagaaacctAGATAACCTGACTCAATGTGGTCACCTGTGCTGTCCATTTCCTTATGTCCATGTTTCAGCTGAACTTGTCAACTTCTGTATTTTATCGTAATttcttgtaatgtttttcaaagtttCAGTCTGGCTAAATCAGCAGTCTCAGTCCAAGTCCAAGCTCTCAAGGGCTCTGGGTTGTTATTCCAGTGTATTTTTACAATTGACTATATTTCAGTTTACATGAGTTATGTTTATCACTAGAGTTTACCAAATTCTTTCAACATTACAGGGGTGGGAGGTTGTGACCAGAAGGACTTGTGAAAGCTTGTATGGAG

Function

symbol description
tenm4 Predicted to enable cell adhesion molecule binding activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within axon guidance. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be active in neuron projection. Is expressed in several structures, including brain; midbrain hindbrain boundary neural rod; neural tube; optic vesicle; and retina. Human ortholog(s) of this gene implicated in essential tremor 5. Orthologous to human TENM4 (teneurin transmembrane protein 4).

NR:

description
PREDICTED: teneurin-4 isoform X1

GO: NA

KEGG:

id description
K24473 TENM, ODZ; teneurin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016320 True 8450 mRNA 0.54 26 15921097 16030468

Neighbor

gene id symbol gene type direction distance location
AMCG00016321 NA coding downstream 18277 15890260 ~ 15902820 (-)
AMCG00016319 NA coding downstream 71985 15841259 ~ 15849112 (-)
AMCG00016315 NA coding downstream 96831 15804860 ~ 15824266 (-)
AMCG00016317 NA coding downstream 163074 15742441 ~ 15758023 (-)
AMCG00016316 NA coding downstream 180751 15735096 ~ 15740346 (-)
AMCG00016318 tenm4,LOC107740368 coding upstream 26641 16057109 ~ 16061718 (-)
AMCG00016328 NA coding upstream 377887 16408355 ~ 16409278 (-)
AMCG00016326 NA coding upstream 389406 16419874 ~ 16425645 (-)
AMCG00016325 rab30,LOC107670675 coding upstream 405024 16435492 ~ 16445488 (-)
AMCG00016332 NA coding upstream 455993 16486461 ~ 16486880 (-)
G12814 NA non-coding downstream 80305 15837835 ~ 15840792 (-)
G12812 NA non-coding downstream 84629 15835194 ~ 15836468 (-)
G12811 NA non-coding downstream 86015 15834822 ~ 15835082 (-)
G12810 NA non-coding downstream 91530 15829355 ~ 15829567 (-)
G12809 NA non-coding downstream 92071 15828766 ~ 15829026 (-)
G12838 NA non-coding upstream 193017 16223485 ~ 16223728 (-)
G12867 NA non-coding upstream 437149 16467617 ~ 16467819 (-)
G12868 NA non-coding upstream 437505 16467973 ~ 16468272 (-)
G12894 NA non-coding upstream 565210 16595678 ~ 16596220 (-)
G12897 NA non-coding upstream 578250 16608718 ~ 16608944 (-)
AMCG00016293 NA other downstream 1129128 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 1493807 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 2361913 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 3050537 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 3592064 12323161 ~ 12329033 (-)
AMCG00016327 NA other upstream 440143 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 828073 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 835850 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 1233133 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 1507566 17538034 ~ 17541342 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000154_00418700_00562133 TENM4 coding CI01000154 null 418700 ~ 562133 (+)