AMCG00016342


Basic Information

Item Value
gene id AMCG00016342
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16876272 ~ 16880591 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016342
CTTTCTCGCATAGAAAGCTCTGAAAGAAAGCGGAACGCAAGTGTCTGTGTCCGCGTTTCTTGCACGACGCTTATCGAGGCGGACCgagtttctttttgttattcaaTTCTGTGGATTGTATTAAATAGtggttatttttgtatttattaagtgGATGTTGGTATTAAAATAATCGCCATAATATCGAACAATGAATCCCCTCTTCTCTAAGCTGGGTTTCTCTGTAAATCATGCAAAGGTGTTCAATCAGGTTGTCTCCGTATTTAGGTTAGCAGTTGCAAATCAGCACCCACTTTTAGGCAGTGTTTTACAGAGCAATGAGAGACAATACCGGTCCATGCCAACTCATGGGATTGGCAGGTATAAATATCTGCTGCCAAAGCAATTGCccaagaagaaaaggaaggacAAGATGCAGATTAAGCAGATTAATCCAGGGACAGAAACAGTGTATGGTACCCTCAATGTGTTAGTGTCTGGCTACGACATGACTTTAGTGGAGCACTACTCCCAGTATGTCCACAACCTCTGTAATCGGCTCAAGATAAAGGTGGACGAGAGCTATGCATTGCCCACCAAGACCACAGAACTGATTCTCGTGCAAGAACAAGGCACCAAGATACATGTGGATTCTGTTCTCAAGACACACAAGAGAGTTGTGCAAGTCAGCGATTTGAGTTCCACTCTGGCCCCAGTGTTTTTGGAGGTCCTTCTAAGAAATCAACCAGAGGGAGTAGAGCTCTTAGTCAAAGAGCACACAGAGGAACAGTTCCAGGCCCGGCTCAAACGTCGCCCAGAACTCGAAGGGTTAATTGCAAAAATTAGCTGAGAATGACCCTCACCTCTATCAGCCAGCCTCCCCTACACTCTGGCTGGTCAAAGGTCACCATAATAGGCTGACCTTTATTCAGCCTTAGAAGAAGTGGTCTATAAAATCAATGTATGAGCTCCtctgatctgtgtttttttttttaatgacaattaGATGTGCACTGAAATAAACATCGGCTTTAATATTGAGCTGCTTgttgtcatgaataataaaaatgctttcCAAATGAGATGCAAACTTgatctttgttttcattaacaGATAGTCAAAGTTAATAGATTTAattagctaaaaaaaaaaaaaaggaaac

Function

GO: NA

KEGG:

id description
K17429 MRPL48; large subunit ribosomal protein L48

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016342 True 1142 mRNA 0.41 8 16876272 16880591

Neighbor

gene id symbol gene type direction distance location
AMCG00016343 NA coding downstream 11880 16861180 ~ 16864392 (-)
AMCG00016344 ppme1,LOC107548200 coding downstream 53902 16811036 ~ 16822370 (-)
AMCG00016336 LOC107680719 coding downstream 101400 16757415 ~ 16774872 (-)
AMCG00016335 NA coding downstream 123282 16587491 ~ 16752990 (-)
AMCG00016333 NA coding downstream 289606 16576609 ~ 16586666 (-)
AMCG00016348 NA coding upstream 48837 16929428 ~ 16938560 (-)
AMCG00016350 NA coding upstream 129140 17009731 ~ 17023094 (-)
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding upstream 159714 17040305 ~ 17071447 (-)
AMCG00016353 NA coding upstream 223383 17103974 ~ 17117735 (-)
AMCG00016352 NA coding upstream 242115 17122706 ~ 17123239 (-)
G12921 NA non-coding downstream 84603 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 126353 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 252366 16623683 ~ 16623906 (-)
G12897 NA non-coding downstream 267328 16608718 ~ 16608944 (-)
G12894 NA non-coding downstream 280052 16595678 ~ 16596220 (-)
G12978 NA non-coding upstream 37975 16918566 ~ 16924672 (-)
G13045 rps3 non-coding upstream 361353 17241944 ~ 17246330 (-)
G13065 clns1a,LOC102781126 non-coding upstream 403812 17284403 ~ 17286829 (-)
G13091 NA non-coding upstream 494675 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 613264 17493855 ~ 17494346 (-)
AMCG00016345 NA other downstream 6270 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 15093 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 401102 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2084303 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2448982 14420356 ~ 14427290 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 383010 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 657443 17538034 ~ 17541342 (-)
G13367 NA other upstream 2210648 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 3248317 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3735918 20616509 ~ 20636960 (-)

Expression


Co-expression Network