AMCG00016343


Basic Information

Item Value
gene id AMCG00016343
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16861180 ~ 16864392 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016343
GCCGATACATCCGAGTCGCACCAGCTGTCTGTGTGCAAAACTGTGACATAACTGAGTAGTTAAGCGCTGCAATTCAATCTACAGACccgtacatatatatttatactgcaaGCTGTTCATCATGGGCCGGGATTATTATGCTGTTTTGCAAATAACCAGGAGCGCAACCGACGCAGACATCAAAAAGGCATACCGAAGACTGGCACTGAAGTATCATCCCAACACAAACAGCGAGCCTGGATCCGCTGATAAGTTCAATCAGCTGGCCGAGGCGTATGACGTGCTGAGTGACCTTCGGAAGAAGGCTACATATGACAAGTTTGGAGAAGAGGGTCTAAAAGGAGGGATCCCTCCAGAGTTTGGGGGCAGTGGCGCCTGGACCAGTGGGTACACCTATCACGGCAATGCAGATAAAGTCTTCACTGACTTTTTTGGAGGAGACAACCCATTTTCAGATTTCTTTCctgaaggaggagaagaggcAAAGGCAGGGTTTGGAGGCCTGCGGGGCCAAGGTGTAAAAAAGCAAGATCCCCCTATCGAGCGCGACCTCTACCTCTCCCTGGAGGACTTGTTTTATGGGTGCAcgaaaaagattaaaatatcgAGGCGGGTAATGAATGAAGATGGCCACACTTCGAACATCAAAGACAAGATCCTAAACATAGATGTGAAGCCAGGATGGAAGCAAGGGACAAAAATCACATTCCCTAAAGAAGGAGACCagGGACCCAACAACATTCCTGCAgacattgtgtttgttgtgaaaGAGAAACAGCATCCGCGCTTCACCAGAGAACAGGATGACCTGATCTACACATCTCATGTCCATCTGGAGAAGGCACTGGTGGGCTGTTCTGTGGACATGGAGACACTAGATGGCAGGCTTCTCAACATCCCCATTAATGACATTATTCACCCAAAGTATACAAAAGTGGTTCCCGGTGAAGGAATGCCATTAATCAGAAATCCCAGCCTTAAAGGCAATCTCATTATTCAGTTTGAGATTCACTTCCCAGAGAAGCTCACATCAGAAAAGAAGCAACTCCTAAAACAAGCCCTCACCCTTTGAATCACATGCAGCATCTTTGGAAACAATCAGGTGTTGTATAACCACGTTATACTGTACCCTGTGGCCTTCATATAGTGTCCTCTTGCATTACTTTAGAGTAGCTTTCATTCTAACAAGGCGGATGAATGTATGCAAAGTGTTGGCTTGAATACATGTGACAATTGTTATCCTCCTCACAAATAAAGGATTTGTTCTTAAAGAGTATGGTGTGCATTTATCCTCCCCCATCTAGGCTAACCTGTGGCCGTCAGCACTTTATTTGAAGTTGCCTACAATTCAAATCATATTTCCCTGAAGTTTAGTAGTTTCATCCTGAAACTGGTCTTCACCCAAACAGACATAGcggttatatttttaaatcctcacGTTATGTAGGTAGTCCAATCCAACCAATATGAAGTGGATCACATAAGCTCTCTGGAGGGACTGGACAACTCATGCAATATAAGTGTTGCTTTGCTG

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09519 DNAJB13; DnaJ homolog subfamily B member 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016343 True 1534 mRNA 0.45 8 16861180 16864392

Neighbor

gene id symbol gene type direction distance location
AMCG00016344 ppme1,LOC107548200 coding downstream 38810 16811036 ~ 16822370 (-)
AMCG00016336 LOC107680719 coding downstream 86308 16757415 ~ 16774872 (-)
AMCG00016335 NA coding downstream 108190 16587491 ~ 16752990 (-)
AMCG00016333 NA coding downstream 274514 16576609 ~ 16586666 (-)
AMCG00016331 NA coding downstream 352773 16504216 ~ 16508407 (-)
AMCG00016342 NA coding upstream 11880 16876272 ~ 16880591 (-)
AMCG00016348 NA coding upstream 65036 16929428 ~ 16938560 (-)
AMCG00016350 NA coding upstream 145339 17009731 ~ 17023094 (-)
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding upstream 175913 17040305 ~ 17071447 (-)
AMCG00016353 NA coding upstream 239582 17103974 ~ 17117735 (-)
G12921 NA non-coding downstream 69511 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 111261 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 237274 16623683 ~ 16623906 (-)
G12897 NA non-coding downstream 252236 16608718 ~ 16608944 (-)
G12894 NA non-coding downstream 264960 16595678 ~ 16596220 (-)
G12978 NA non-coding upstream 54174 16918566 ~ 16924672 (-)
G13045 rps3 non-coding upstream 377552 17241944 ~ 17246330 (-)
G13065 clns1a,LOC102781126 non-coding upstream 420011 17284403 ~ 17286829 (-)
G13091 NA non-coding upstream 510874 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 629463 17493855 ~ 17494346 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 1 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 386010 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2069211 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2433890 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 3301996 13543348 ~ 13559184 (-)
AMCG00016345 NA other upstream 1926 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 399209 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 673642 17538034 ~ 17541342 (-)
G13367 NA other upstream 2226847 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 3264516 20128908 ~ 20135547 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17705069_17711334 DNAJB13 coding CI01000304 null 17705033 ~ 17712467 (-)