AMCG00016348


Basic Information

Item Value
gene id AMCG00016348
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 16929428 ~ 16938560 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016348
TCCATACTGAGGCGCTGGAAGAGGAACTGGTTTGATCTGTGGGTTGACGGGAACCTACTATATTATGAAAATGAGAGCCGGAGAGACTACGAGAACAGAATCCGTTTGAAGCACAAATGTACCTCTGTCAAAGCAGGACTGGAATGCACAGgTGTGGACCCTCCAGAAGGCAAGCCCCAGGAGTGCCTCGTCCTGGTATACCTGAAGGATGGCTCTAAACTGGTGCTGTGTGCCGACAGTGAGGACGAGGCGCTAGCATGGAAGCTGGCATTACTGGAAGCAAGAGCAAACCCGGTGTACATGTATGATCCGTACGATGACGCCTACCACACCATTCCACTGGACAGCCACAATGCTGTCTACATCAGCCCTGCGTATCCAGGATACGGCTATGGAGGAACTCACCACGTGCTGGTGCACAGCGACCCCTGTGAGGGCGTGGGGACGCAGGTGGCTCTGGGGCTGCTGGCTGGCATGGCCACTGGGGCAGCGCTGCGCTCTCTCATGTGGATGCCCTTCTGGTTCTGC

Function

GO: NA

KEGG:

id description
K23857 PLEKHB; pleckstrin homology domain-containing family B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016348 True 528 mRNA 0.56 5 16929428 16938560

Neighbor

gene id symbol gene type direction distance location
AMCG00016342 NA coding downstream 48837 16876272 ~ 16880591 (-)
AMCG00016343 NA coding downstream 65036 16861180 ~ 16864392 (-)
AMCG00016344 ppme1,LOC107548200 coding downstream 107058 16811036 ~ 16822370 (-)
AMCG00016336 LOC107680719 coding downstream 154556 16757415 ~ 16774872 (-)
AMCG00016335 NA coding downstream 176438 16587491 ~ 16752990 (-)
AMCG00016350 NA coding upstream 71171 17009731 ~ 17023094 (-)
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding upstream 101745 17040305 ~ 17071447 (-)
AMCG00016353 NA coding upstream 165414 17103974 ~ 17117735 (-)
AMCG00016352 NA coding upstream 184146 17122706 ~ 17123239 (-)
AMCG00016354 NA coding upstream 207433 17145993 ~ 17146985 (-)
G12978 NA non-coding downstream 4756 16918566 ~ 16924672 (-)
G12921 NA non-coding downstream 137759 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 179509 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 305522 16623683 ~ 16623906 (-)
G12897 NA non-coding downstream 320484 16608718 ~ 16608944 (-)
G13045 rps3 non-coding upstream 303384 17241944 ~ 17246330 (-)
G13065 clns1a,LOC102781126 non-coding upstream 345843 17284403 ~ 17286829 (-)
G13091 NA non-coding upstream 436706 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 555295 17493855 ~ 17494346 (-)
G13129 NA non-coding upstream 557363 17495923 ~ 17496347 (-)
AMCG00016345 NA other downstream 59426 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 68249 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 454258 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2137459 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2502138 14420356 ~ 14427290 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 325041 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 599474 17538034 ~ 17541342 (-)
G13367 NA other upstream 2152679 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 3190348 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3677949 20616509 ~ 20636960 (-)

Expression


Co-expression Network