AMCG00016351 (LOC106613240,LOC107600776,LOC107577125)


Basic Information

Item Value
gene id AMCG00016351
gene name LOC106613240,LOC107600776,LOC107577125
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17040305 ~ 17071447 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016351
ATGCTGCAGATGGTAAGGACGCTCGCCCAGTTCACCATCGCACTGGAGGAGATGCGAGAGAATGGGGAGAGTGCAAGTGAAGACCCTGGAGCCCGGGAGGAGGTGCTGGAGCGGAGCAGCGCGGAGGCCAATGGGAACAGCGGCGCGGGCTCCCCTCAGACCTCGAGCGAGATTACACCTGTCTTCACCTGTGAAATGAACATGTTGCAAATGAGGATGTTAGCTGAGGAGGCAGGAGGGGTTGGTCTTCCATGCCTCACCCAAGCATCGCTGGAGATTATACAGAAAACCTTAATGACACAGGCCCGTGATATGAGAAAACATGTTATGATGACACTCCTAGACACCGAGCAGTCCTATGTGGAGTCACTTCGCACTTTAATTCAGGGCTACATGAGGCCTCTGAAGCAGCCGGAGAACTCGTTCATCTGTGACCCCTCCCTGGTGGACGAGATGTTCTACCAGATCCCAGAGATCCTAGAACACCACGAACAGTTCCTGGAGCAGGTCCTGGTTTGTGTGCAGGACTGGCATGACAAGCAGAAAGTGGGCAACCTACTCATTGATTCGTTCTCCAAGGACATACTAGCGAATATTTATTCAGCGTACATTGACAACTTTCTGAATGCCAAAGATGCTGTGAGAATAGCCAAGGAGGCCAAGCCTGCCTTCCTCAAGTTCTTAGAGCAATGCACACGGGAGAACAAGGAGAAGCAAGCACTGTCAGATTTGATGATCAAGCCAGTCCAGAGGATTCCCCGCTATGAACTTCTTGTAAAgGACCTATTGAAGCACACCCCCGAGGACCACCCGGACCACCCCTTCCTCCTGGATGCGCAGAGGAACATCAAGCGCCTGGCTGAGAGGATCAACAAGGGCCGGCGCAGTGCGGAGGAGGCGGAGAAGGAGACACGCGTGTTGCAGGAGATTGAAGCGCACATCGAAGGGGTGGAGAATCTTTTAAACCCTCAAAGGAAGTTTCTAAGGCAAGAAATGGTGGTCGAAGTGAAGACAGTAGGTGGTAAGAAGGACCGGTCCTTGTTCCTGTTTAGTGACCTACTGATCTGCACAACACTGAAGCGGAAATCTGGCTCCCTACGTCGCAGCTCCATGAGTCTCTATACAGCAGCCAGCGTTATTGACACTGCCAGTAAATACAAGTTCCTCTGGAAACTGCCTTTGGAAGATGTGGAAATGGTAAAAGGCACCTCTCAGGCTACCAACCGCGAGAACATCCAGAAGACCATCGGCCGGCTGGATGAGGACCTGAGCACGCTGGGCCAGATTAGCAAGCTGTCCGAGACCCTCAGCTTCCCTCATCAGAGCCTGGACGATGTCATCAAGGACCTGATGGCTGCCGTCCATCGCGAGCTGGCCGAGAAGCAGTCCCTGTCGTTCAGTATGACCTTCCTGCCGACCAAACTGGAGCTGACCACTGCCTCGGCTGAGAACAGCTTCATCTTTGAGTTCACCGCCCCGGATGCTCGCGGCAACTTCGAGCAGGCCTTCGAGGATGCCAAGAAGAAACTCGCAATGAATAAAGATCACTGGGACCCGGAGTTCCTCAAGGCCATTCCCATCATGAAGACTAGGAGTGGGATGCAGTTCTCGTGCGCATCACCCAGCCACAGCTGTCCAGAGAACACGTACGAGGTGTGGGTGTGTAACAGCGACGGCTACGTCGGCCAGGTGTGTCTCCTGAACATCAAGGACGAGCCCACGGTGGAGGCCTGCATCGCCGTCTGCTCTGCCAGAATCATCTGCATCTCGGCTGTGCCTGGACTCAAGGGGAGGTACGACTCGGCACCGCTGGGTGCAGTACACCTTGTTTGGTGTTTCGCCCACAGAGATCGCGGGGAGTCTCTGCTGAGCCCACCCTCGTCAGAGCAGCCCCAGGGCCCCACGGAGCAGCACCTCCACATCTCCATCTCGGGCTCCTCCCTGGAGCTGACGGAGCCCCCTGGAGCCCCCGGCCGGGAGCTGGTCCCCTTCGACAGCGACGACACGGACGATGAGTCCTCCCCCAGCCCCTCCTCCACCCTGCAGAGCCAGGCCAGCCACTCCACCATCTCCTCCAGCTTTGGCAATGATGAAATGGTGGGCTCCAAAGAGATGGCCACGGAGACAACGAGTTCTGAGGAGGAGCAGGAGTACCCATCCGTGGCCAGTTCCATACATGTGTACCAGTCATCTGACAACATTCGGAACCGGAAGAACAGCATGAAGATGCAGCACTCCGCCTCGATCCTGTGCATCTTATACCTGGACAACAAAGTTTTCGTGTCACTTGCCAATGGTGAAATCATTGTCTATCAAAGGGATGCAGGCAGTTTCTGGGACCCTCAGAACTCGCAGACCCTGAGCCTTGGCACGCCAGGCAGCCCGGTGACCAAGATGGTTCCAGTGGCCGGGAAGCTGTGGTGTGGCTGTCAGAACCGCATCCTCATCATCAACACCAACACTCTGGCACAGGAGGGCGTGTGGATCGCCCTGCAGGGCAGCGCTCAGGTTCGGCTGTACCACGCTGCCACGTATGAGAGCCTCACGGAGGTGGACGTGGCCCCGGCGGTGCACAAGATGCTTGCAGGCTCAGACGCCATCATCCGGCAGCACAAGGCCGCCTGCCTGCGCATCACAGCCCTGCTGGCCTGTAAGGACCTGCTGTGGATCGGCACCAGCGCCGGCGTGGTCCTCACTCTCTACATCCCCCCTGTgtcctccagcagcagctccctGCGCAGCCCTCTGGTCCCCATGGGCTCGGCTCACGGACACACCGGCCACGTGCGCTTCCTCACCTCCATTGAGCTCCCAGAGGGCTTCGATGTGGCCTTCCCCTTGCCTGGGGAGCAAGGCGCCCCGGCCACTGGCGGAGATGGGGGATCCAACCTGCAGAGACGGGACTCAGCCCGGCGTCGTGCCTCCACCATCCTGCAGACCAAATCCAACCTCCTGGTGATCAGCGGGGGTGACGGCTATGAGGACTTCCGGCTCACCAACAGCAGCGAGACGGTGGGCCGCGACGACAGCACGAACCACTTGCTGCTGTGGAGGCCGATCGCAGCCGCCGGCCCCCCACCGCCAGCACTGCAGAGCCACGCCAGCTCCTCCCTGCGCACCCCTCCCTCCTTTTTATACTCGGTGTCTGCTGCTCGGACGTCTGAAGTAAATCTCGCGCAGCCTGTGTTGTTCCTGGCTCTGCTGTGCAGCAAGAGGAAGTTTAAGAGGTAG

Function

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 17-like isoform X2

GO: NA

KEGG:

id description
K20689 ARHGEF17; Rho guanine nucleotide exchange factor 17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016351 True 3231 mRNA 0.58 24 17040305 17071447

Neighbor

gene id symbol gene type direction distance location
AMCG00016350 NA coding downstream 17211 17009731 ~ 17023094 (-)
AMCG00016348 NA coding downstream 101745 16929428 ~ 16938560 (-)
AMCG00016342 NA coding downstream 159714 16876272 ~ 16880591 (-)
AMCG00016343 NA coding downstream 175913 16861180 ~ 16864392 (-)
AMCG00016344 ppme1,LOC107548200 coding downstream 217935 16811036 ~ 16822370 (-)
AMCG00016353 NA coding upstream 32527 17103974 ~ 17117735 (-)
AMCG00016352 NA coding upstream 51259 17122706 ~ 17123239 (-)
AMCG00016354 NA coding upstream 74546 17145993 ~ 17146985 (-)
AMCG00016361 NA coding upstream 221641 17293088 ~ 17294875 (-)
AMCG00016368 myo7aa,myo7a,LOC107660700,LOC106581013 coding upstream 308984 17380431 ~ 17413600 (-)
G12978 NA non-coding downstream 115633 16918566 ~ 16924672 (-)
G12921 NA non-coding downstream 248636 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 290386 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 416399 16623683 ~ 16623906 (-)
G12897 NA non-coding downstream 431361 16608718 ~ 16608944 (-)
G13045 rps3 non-coding upstream 170497 17241944 ~ 17246330 (-)
G13065 clns1a,LOC102781126 non-coding upstream 212956 17284403 ~ 17286829 (-)
G13091 NA non-coding upstream 303819 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 422408 17493855 ~ 17494346 (-)
G13129 NA non-coding upstream 424476 17495923 ~ 17496347 (-)
AMCG00016345 NA other downstream 170303 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 179126 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 565135 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2248336 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2613015 14420356 ~ 14427290 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 192154 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 466587 17538034 ~ 17541342 (-)
G13367 NA other upstream 2019792 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 3057461 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3545062 20616509 ~ 20636960 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013164 ARHGEF17 coding NC_007129.7 CM002902.2 2681241 ~ 2727764 (-)
grasscarp (Ctenopharyngodon idella) CI01000318_00105452_00133389 ARHGEF17 coding CI01000318 null 105452 ~ 133389 (-)