AMCG00016353


Basic Information

Item Value
gene id AMCG00016353
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17103974 ~ 17117735 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016353
ATGGCGGAGGAGCACCAGAGGCGAAAGCTGTACAGGAGCGTTTCTTTCAAGAGACTGGAGAGCTGGAGCGCAAATAAGAGCCGCCCGGCCGCGCAGCACCCCCAGCCCCGCCGCGCCGCCGTCCCGGGCGGCGCCCATCCCCCCTCGGCTGCAGAGCCGGCCGCGGCCAGGAGAGTCTCCAAAATCTCAGCTGCCAATGTGGCCGCCGCGCAGCTGAAGAGGAGCGCCGCTCTgccctccctctccatctcgCCGTCCATCCGCCAGCTCTCCGAGAGATTCAGCACCCTCCCCGCCAGAGACTGCGCCCCGGCCCGGAGCCAAGGCAGGGCTGAGGGCTTACCTTCCCACAAGCTGCCCAGGGACGAGAGGGGACGTTTGCCGGAGCCCGAGGAGGACTTGCTAGAGCCGCCTGCGTGGAGGTGCCAGGACTCCGGGGGTGAGTCGGTGCCCGCAGGTAAGAAAGTTTCTGTACCCGCTGCCGCTGCCGCTACTTTGCTAAGGactgccgccgccgccgccgccgagGATGAGGTGTTTGTTAGTGGGGTCGCGGCGGGCAGGTCGCAGCGGGACACAGCCGAGGGCGCTCATGTCGAAATGACAAACTGGCCAAGTGTGACACAGATCCGCAAGCTGTTTGGAGACGGGCACCGAAAGCAGCACCGGTCCAGCTCGGACGCGGACGACCTGAAGAGCTCGAGTGAGAGAACAGACAATTGGACTGCAAACTCAAACAGTGACCCAAAGCCCCCTCCCCCAGCTCCCCCAGCTCCCCCACCCCGCAGCAGCTCCGTTCCCCTCTCCCTGAGAGCGCACTCGCTTTCCTTTGGTCGGCAGCACAAACAAGAGGCAAGACAGCCATCGGATAGTTTACATTCTTCGCATAGCTCTTCCAAACCACAGGCTGCCCCCTCCGCTGCTCCTGCCTGTGTTAAAGTGAGCTCCAGCGAGGAGGACGAGTCCTGCGGCAGAAGGGGCCGAGGCAGCTTCCCGGTGGCTCGCGGAAACGGCAGCAGCGCTTGCAAGAACAAGAATGGCTCCTGGGCCAGGCCCCTGGGGAGATCCTCTGGCAGTGAAGAGGATGGCCCGCTGCCAGTAGCCCACAACAGAGACAACGTGAGGCGTAGATCCCTGAGGAAGAGGGTGAAGAATGCGGTGGGGAGCCAAGACAGCGGGGAGTCTGATGACAGCTATGATGCTCCGCTGATGGAGGCCATTGAGAGGCATCAGCGGCCCTGTGACCTGGATCAGCTGGGGACGACAGATGAAGTGAAGTCCAACTACACAGCCAAGGAAGGCCATTCGTCCACTTTACCCAGTCAACCCTGGGACCGGCGCAGCTCGCCCTCTGTCGAAGGCAGTTACCTCTCACAGCGCCCTGGAGGACAGGACAGCTATAAGCGCCATTACCGAGGCACGTCTGATGGTGGGTTCAGCCCTTCCGGCACTTTCCAGGGCTCGTCAGGTGGGTCTCCCATCCCACTAGTTTCCAGGGTTTCCAAAGTCAACATCTCCTCCTTCATGCAGAGCCCCAGCGGCTCCCGAAGCAGCAGCCGCTATTCGAGCACAGAGACGCTGAAGGAGGAAGACCACCCTTCCGCCAGCTCGGGCCTGGTTGCCGCAGCGTCGTCGTCTATGCTGAGCAAGAGCTTCCACGGCAACTTCACCATGTACAGGTCGCCCAGCCTCAGCCACGCCGACTACGCCTCCAAGTCTCAGGTGCGCCCGCGGCCCAAGCTGCCTTTTGGTATCGTCAGAGTGCCCGGCGATGATGCGTCTGACAGCAGGAGCCCTTGTCCTCATGCCAGTGACAAATCTAAACACCGGATGTCCATGTCGAATCCTGACATTGCATCAGAAACGCTCACATTGCTTAGCTTTCTCAAAACGGACCTGTCAGAGCTGAGGGTTCGAAGGAAAGGGAAGGGTGAAGTCGATCACAATGAGGCTGGATGTGGCCAGCAGGCTAGTTCTCCGAGAACGTCGGGCACATCACCTGCCTACAGACTGGGTTGTAAGGCCCAGTGTTCACCTCATGGTCGCCTCTCCCTGAAAGATCTGACCGCCACATTAAGAAGAGCCAAGTCCTTTACTTATTCAGAGAAACCAGCAGGGCGGCGACAGTCAGCTGGAGGGGCAATGAAACTGAGCTCCTCTGAGCTGATGCTGGCCTGCCTGGCAGACAAGGATGCTGCTGTTTCTGACAGGGGAACAGAGAGTGATGGGGGCCAGAGGAACGAGGATTATGATGATGAGATGTCCAGTCCTCTACAGGACCAGTATATTCAAGAAGCCAGACAAGTGTTCAGAGACATCAGCCAGATGGGCGCTCAGGAGGAATATTCTTTTGGAGTGGGATATGAGGAAAGTGAAAGTTATagaaagagggaggaagaggacaaAGCGGAGAGAGTTGGATCAGTTCAGAAAGAGATTGAGGATGCTTTGCTTTTGGGGGAGAAAAGAGAAAGTGAGAAGAGTTTAAGGAAGGGTGAATCAgatgaaaatatattctgtgAGAAATCGGTAGATGAACTGTCTGGACATGAGTCCAGTTTGACAGATGAAGGAATTGTGACAGAGCCAGAGACGGGGCCGAGTGGGGGCTCATCAAACAGGGATGTTCTGGGGCAGCCGCTGACAGTGTGGAAGCAAGCCAACAGTGGGCTTCACAAAGAGGTCCTTCCAAGTTTGCATCCTGAGAAAAACCTCCCTCCACCAGTTCCAGCTGTGAGGACAGATTATGAGGGTGTAGCGATCGGGGGAGAGACGACctatgttaaaaatgtaaatcaaggACCGCTTGAAGCCCCTTCAACACCCAGTGCAATCCGAAGAAGAAGGAAGTTTTCATCTACAGGAAACAATGGCTCTGATTCCAGTAATGGCAGCAATGGCGAATCAAGTGGAGAAACCTACAGGTCTCTGAGCGACCCCATGCCACACCGGCGTTGCTCTATCCCAGAGGACGCCAAGAACTTCTCTGTGGACAGCAACCTGCTGGGCTCTCTGAGCTCCAAGAATGGCATCCCAGAATCCTCTGCCACAGATCTGTCAGAGTGCACGGGCAGCGCGGCGAGCGACCTGTCTGTGTGCAGCGATGGCCTGAAGGATTACAACACCGTCATTCAAAGCATTGTGAGGGAGCCTGGGGCCATGGATAAGCTGATCGATGAGAAAGGGAATGGAAAGGCTGTGAAAAAGAAATCCTTCAGTGATCCGAGTCGTCGAGGGGAGTCGGACACGCCTGGGTTTAAGGGCCCAAGCGAGCCCATCAACGAGATGGAGCAAGCCATCCTGCCGTCCAGCAGCGAGCCGATCCTGTCTGAGCAGCGGGATGTGCTGGGGGAACTGGAGGAGCTCTACAGGCCTGATGGGAAGCCACGCTCTCAGTCTGAGCACCTGCTGCCTTCGCATCTGGAGTCAGAAGTGTTGGAAGGGGCGCCCTGTTTCCCGTTCGACCCCAAACTGGCAGAAGTCCTGTCTCCCCGCATGGCAAGACGCAGCTCTAAGAAGCGCATCATGCGGGCCACGCATCTCGAGGGCAGGGCGCCCCCCCAGTCAACTGATACTGAACACCTGCAGCACTCCGCCAAGGCCAGGCCTGCGCCCAAGCACGTGCGTCACGTCAGTGAGCCGGCCAGCTTCGTACCCATCATCCCACCTGAAGCGCACGTTTCCCAGGGCCCCCCAGTTCACATCACTGTCCCAGAGCCCTCCAGACCATCCCACAAACCCTACCCTGTGGTCCAGGCTCCCTCGCTGGAGGATGTAACGGAGCAGTACATGTTGGCCTTGAACTCCGTCGACTCCCATCACGTCCCCCAGGAGACTTCCAGGTCGACGCCTGCCACGCCGACCACAGGGGAACTGAAGCTCCTGCGGAAACCCAGTGAAGAGGTGACCCCCGCCACTCCGAAGAGCAAACCCCAAGTGAGCAATTCTGAAAAGGCCTCCTTCCTGCAGCGATACACACCACCGCCCTCTTCAAGttGTGGGAAGGTTCTGGGACTCAAACCACATGTTTATGCAGCCCTCTCTTACTGA

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016353 True 4050 mRNA 0.58 5 17103974 17117735

Neighbor

gene id symbol gene type direction distance location
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding downstream 32527 17040305 ~ 17071447 (-)
AMCG00016350 NA coding downstream 80880 17009731 ~ 17023094 (-)
AMCG00016348 NA coding downstream 165414 16929428 ~ 16938560 (-)
AMCG00016342 NA coding downstream 223383 16876272 ~ 16880591 (-)
AMCG00016343 NA coding downstream 239582 16861180 ~ 16864392 (-)
AMCG00016352 NA coding upstream 4971 17122706 ~ 17123239 (-)
AMCG00016354 NA coding upstream 28258 17145993 ~ 17146985 (-)
AMCG00016361 NA coding upstream 175353 17293088 ~ 17294875 (-)
AMCG00016368 myo7aa,myo7a,LOC107660700,LOC106581013 coding upstream 262696 17380431 ~ 17413600 (-)
AMCG00016367 capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883 coding upstream 309769 17427504 ~ 17460486 (-)
G12978 NA non-coding downstream 179302 16918566 ~ 16924672 (-)
G12921 NA non-coding downstream 312305 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 354055 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 480068 16623683 ~ 16623906 (-)
G12897 NA non-coding downstream 495030 16608718 ~ 16608944 (-)
G13045 rps3 non-coding upstream 124209 17241944 ~ 17246330 (-)
G13065 clns1a,LOC102781126 non-coding upstream 166668 17284403 ~ 17286829 (-)
G13091 NA non-coding upstream 257531 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 376120 17493855 ~ 17494346 (-)
G13129 NA non-coding upstream 378188 17495923 ~ 17496347 (-)
AMCG00016345 NA other downstream 233972 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 242795 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 628804 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2312005 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2676684 14420356 ~ 14427290 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 145866 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 420299 17538034 ~ 17541342 (-)
G13367 NA other upstream 1973504 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 3011173 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3498774 20616509 ~ 20636960 (-)

Expression


Co-expression Network