AMCG00016367 (capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883)


Basic Information

Item Value
gene id AMCG00016367
gene name capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17427504 ~ 17460486 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016367
CGCGTGTGCGGGTGGAAATGTGCAAACGGAGGCGCAGGGCAGACAGGGAGGCAGAGCCGCTGCGGGACCCACACCGCCCTGCACCCCGGGGAGCCGGCAGAGACGTCAGCGCGGGAGAGGGACCCTGCTCAGTGAAGGCCTACGAGAACCAGCACTACACCTCGCTGAAGAAACAGTGCCAGAGCAGTGGGACGCTGTTTGAGGACCCCCTCTTCCCCCCTGTGGACGAGTCTCTTTTCTACCAGGGCAACCGAATCGGCAGGGTGCACTGGAAACGACCCAAGgagCTGTGTGCTGACCctcatttgtttgttcatgGGATTAGTGCCCATGACTTGCACCAGGGACAGCTGGGAAACTGCTGGTTTGTGGCAGCCTGCTCCAGTCTAGCCTCCCGGGAATCTCTATGGCAGAAAGTCATTCCAGACTGGAAGGAGCAGGAATGGGACGTGGAGAAATCCAATTCCTACGCTGGGATCTTCCACTTCAGATTCTGGCGTTTCGGAGATTGGGTGGACGTAGTGATTGACGACAGGCTCCCAACCATCAACAACCAGCTGGTGTACTGCCACTCGAACGACAGCAATGAATTCTGGACTCTGGATGGTGGGAACACGGCGGACGCACTTGTGGACTTCACCGGCGGGGTGTCTGAGCCCGTGGACCTGGTGGAGTGCCAGTTCGCCCGGGATGAGGCATCGAGGAACCAGCTGTTCGATAGGGTGCTCAAAGTACACAACCGGGATGGGCTGATCAGCTGCTCGATCAGGGCGGCGAGCTCGGCAGACATGGAGGCGAGGCTGGACTGTGGGCTGGTCAAGGGCCATGCCTACGCCGTCACCGACGTCCGTAAGGTCAGGCTGGGCCACGGCCTGCTGGCGTTCTTCAAGGCGGAGAAGCTCTGCATGATCCGCATGAGGAACCCCTGGGGAGAGAAGGAGTGGAACGGGCCGTGGAGTGACAGCTCTGAAGAATGGCAAAAGGTGAGCAAGAGCGAAAGAGAGAAGATGGGGGTGACAGTGCAGGATGACGGAGAGTTCTGGATGTTGTTTGAAGATTTCTGCAAGCATTTCACCGACTTAATTCTGTGTCGCCTCATCAACACCTCCTACCTGAGCATCCACAAGACCTGGGAGGAGGAAGTGATGCGCGGGTCCTGGGTGCGGCATGACGACCCGCTCAGGAACCTGGCAGGGGGCTGCATCAACCACAAAGCCACCTTCCTGCAGAACCCCCAGTATGTGTTTGATGTGAGGAAGCCCGAGGACGAGGTGCTCATTTGCCTGCAACAAAAGGACCGCCGCGCTCGGCCCAAAGAGGGGAAAGGAGAGAACCTGGCCATCGGCTTCGACATCCAGAGGGTGGAGCTGAACCGGAAGTACCGCATGCACTCGACCCAGCAGAAAGTGGCGGGATCCATCTACATCAACTCGCGCTGCGTGTTCCTGAAGACGGAGCTGAAGGAGGGCCGCTACGTCATCATCCCCACCACCTTCGACCCCGGCCTCCAGGGAGAATTCCTGCTCCGGGTCTTCACAGACGTCCCTGCAGAGTGCAAGGAGCTGACTCTGAACGAGCCCCCACAGACCTGCTGGACTGGCATGTGTGGATACCCCCAGCTGGTCACTCAGGTGCACGTGGTCAGCGCAGAGGGCCTGCAGGGCCAGGGTGCCGACGGAGCTTCTGATCCCTATGTTGTGATAAGCTGTGATGGGGAGAAGGTCCGGTCTGCAGTGCACAAGGATAAGCGCAACCCGGAGTTCGACATCAAAGGGCTTTTCTACAGGAAAAAGACGAGGGAAGGCATTCATATAGAGATCTACAACAAGAATGTGATCTGTGACTCGTTCCTCGGCCAGGTGATCCTCACCAGCGACCCCAACGacctccagcagcagcacacgGTGCACCTGCGCGACCGAGGCAACCGGCAGAGCAACGACCTGCCCGGCACAGTGACCGTGAGGATCATCACTAGCAACGTGCTGACCAACATCTGAGCCAGCAGCGCCTTACCCCAGTGCCCAGACGCACAGTTCAAGGCTGTTCTGCCTCCCATGCAGTGAGACTAAGCCTATGTTTCTCAAAGtgaaagcaaatatatatagatacacatgtATACGTAAGTGTTTACAAGGGCTATGCATCATGGTGAGGGAGCATTCACGTCTGTTTTGACCAACTGCCTGTGGCTAGCAGGCTATCATTATCGTTCAGGAAGAACAGAGTATATCTGGAATGTATTTAATGTCAACCCTCCCGACCCCGACACTGAGAGCTGGCTGGCCCACATTAGGGGTCTTTAcatttctcctcttctctctaCTCGTtgttccttttttccttctgaaaagctcattcagttttttcttttgttgttgttattgcttAATTCTTGTCTCTCAAACGTTGGGTGTAGTCTTTTAAGAAACGTCTTTTAAAAGTTCTTTGAGAGAACTAAACGCTGACAACagtgaattaatattttttcagagtGTCTTTTACActtcttatattttgttatactactaagtttgtttgatttttctgtgtatatttatCATCAAGAAGTGCTTTATGGGACCAAAGAAAGCCATACAATGTTATCTACCATGCGCCATATTTGCCATcagttattgtttcttttttaatgtcatttgcCTGAGATGGTGAAAGTGAAGCCTCAATCACAGCAAACTGAATGAGGAAATGCTTTGGAACTGCACAATGCTAGACAGCAAAGTGATGCTGCTTAAATTATCTCCCTTGTTTTAATATACGCCAAACTGCGTAGCTGAAGACCGTAGATAACTGCAGTTTTGCTTGTACTTTTCTACTTTTCAGACGCTTAATTACAAGCTGTGTGTTATTAAGGGGAAAATGAAGAGGATGCATATATACTTGACTTGAGTACCTTTTGGAAtgttatttcaaatattaacaTTAGTTTTATATAAATTCCTTTGAGATAAACAGTGCTTCCAAAATTAAGGTCATATTTTTCTCAAATGTTGTAACTCAAGTAAGGTCAGTATTGCATGGTACCCTTATGCAGCGTGGGAGAACATGCACAAAAAAGTTACTCATCTCAGAATTGATGTTTGCCCCAATGTTCCTCATTCAGTGTTTGTTGTGATTGAGCTTTGTCTGAGGTTTAAGGCCTTCTGGCCCACTGTGTTGTGGTCGTAGTGGGAGCTGGATGCACAATATACCTCACTTGACTGTTTTAGAATCAGCAGTGGGAAATATTTGGGTTAGTCTGGGTACAGGCACATGTAATCTCAATATATGTCCTTTCTGATAAACCAATGCTTTGGCCAAAACCAAATCTTAGGTGCCATAGTGGACAGTGTGTGcaactaaaattaaatctttaaaatacacaacttTGTATTCAATATGGATAGCGTAATGTCCCATTTAATAGTCTTACATTCAgtcaaatattaatttcataaatgtttatatattttatcatcaTTTATAATGGTTGggttttcataatgttttttcagttttccttcattaaagtgcaataagtGCTATGTTTAAAGTAGAAGCTTTTCTAACTTGGCTGAGAGAATATTTGACAATCCATTTTGACTTATCAAACCACTTTTTAAAGGCAGATATGTAGTTTTTTGAGAAAAGTGAGTTATTCTAGTTCTCATTGATGTTATATTATTTGCTcgtgttcattttattgttttcagtaaaaGTGTAGTCAAGGCCCATTGAGCAAAATCCCTGTCGGCTTCGAACATGGTGCTGCCATTTTATACCCTGGCACATCGAGGACTTTGCTCAAATTTATTTGTACCCGATAAgtaaatcaatatgaaaatagTTGTCATAAAAGGTGGAAAAAAGCTTTTCGGAGTGAGTATTGCTAAAATGTCTAACGTTTAGTAGAACTTCAGTATCATTCAAGaaggcagtgagagagagagagagagagcgtcaTTCAAATGACTGAGTTAGATTTTTGTTGCCTtggttgtatatttttgtatatcagttttttttcattgttaagaATATTGCCAAATATTGCTTTGTTATATTGTGTGTACTTCTTGGAGCATCTTTGCACTTCTCAGAAAATTCAACTATAGTACAAAACTCTAAAACTCTACTTGTTATTGGCTTTCTAATCATTCATTTGCCATGTTTACTTGTACATGAAtacttaaaatttaaaattaataataatttacatggACTACAGACATCGGAGCTGCTCTGTCACAGTAATGATACACATCTTATGATCATAATCCTTTGTAAACTAATTTTAACAGGAATTAAACAAACCACTTACTGAGGGAGAACCAGTAAGTACTCTCTTGTAGTTTGGCATAATCTTTGACTTGAAACTTGCAAATGTAATGCATGATAACACTCTATACCTGACAACTATAGCGTTTGTATGACTATTTTCTAATCaatattttgtacttttctGTTAAATCTTTTATATTTCCGTGTTGAATCCTGGGTTCAAAGCAAATCTGTTTACTGTTGTTACAAagctgaaattattattttgtgtttaatgtttttttcttttctttttagttttattccttttttttctcttgatgAATCCCTGCCAGGGTGCCAACTGTGgttattttgtaacaatttttttttttttttttttttgtattttatgtcaaCTTGTGGcatgaatttgaaataaaacttAAGATCTTTTAAGGGATTTCCTTTgagactttattatttattt

Function

symbol description
capn5b Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm. Is expressed in nervous system. Human ortholog(s) of this gene implicated in neovascular inflammatory vitreoretinopathy. Orthologous to human CAPN5 (calpain 5).

NR:

description
PREDICTED: calpain-5-like isoform X1

GO: NA

KEGG:

id description
K08574 CAPN5; calpain-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016367 True 4750 mRNA 0.45 13 17427504 17460486

Neighbor

gene id symbol gene type direction distance location
AMCG00016368 myo7aa,myo7a,LOC107660700,LOC106581013 coding downstream 13904 17380431 ~ 17413600 (-)
AMCG00016361 NA coding downstream 132629 17293088 ~ 17294875 (-)
AMCG00016354 NA coding downstream 280519 17145993 ~ 17146985 (-)
AMCG00016352 NA coding downstream 304265 17122706 ~ 17123239 (-)
AMCG00016353 NA coding downstream 309769 17103974 ~ 17117735 (-)
AMCG00016369 dcun1d5,LOC106612886,LOC107600360,LOC107712802 coding upstream 6197 17466683 ~ 17472931 (-)
AMCG00016375 cul5,LOC107714978,LOC107554266 coding upstream 14932 17475418 ~ 17490419 (-)
AMCG00016374 NA coding upstream 43394 17503880 ~ 17506443 (-)
AMCG00016381 NA coding upstream 217644 17678130 ~ 17686737 (-)
AMCG00016384 LOC107548160,LOC108279362,LOC108440167,LOC103155416 coding upstream 236443 17696929 ~ 17704385 (-)
G13091 NA non-coding downstream 49965 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 140675 17284403 ~ 17286829 (-)
G13045 rps3 non-coding downstream 181174 17241944 ~ 17246330 (-)
G12978 NA non-coding downstream 502832 16918566 ~ 16924672 (-)
G12921 NA non-coding downstream 635835 16791423 ~ 16791669 (-)
G13126 NA non-coding upstream 33369 17493855 ~ 17494346 (-)
G13129 NA non-coding upstream 35437 17495923 ~ 17496347 (-)
G13254 NA non-coding upstream 702301 18162787 ~ 18165770 (-)
G13334 NA non-coding upstream 1365708 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 1597919 19058405 ~ 19058673 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 160757 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 557502 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 566325 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 952334 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2635535 14785198 ~ 14791969 (-)
AMCG00016376 NA other upstream 77548 17538034 ~ 17541342 (-)
G13367 NA other upstream 1630753 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 2668422 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3156023 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 3205656 20666142 ~ 20683024 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_12266910_12288366 CAPN5A, CAPN5 coding CI01000054 null 12266816 ~ 12288366 (-)