AMCG00016368 (myo7aa,myo7a,LOC107660700,LOC106581013)


Basic Information

Item Value
gene id AMCG00016368
gene name myo7aa,myo7a,LOC107660700,LOC106581013
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17380431 ~ 17413600 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016368
ATGTACAGTCAACGTCACAAGGAGGACTTATACGAGAAAGAACAAGGGAAATGGGCGCTGCTGCGAAATGTCAACACTGTGTTCAAACAGAGCACCTTGTTACCGGGGGATTATGTTTGGTTGGACCTCAAGACGGGCCGTGAGTTTGAAGTTCCCATCGGGGCTGTGGTCAAGCTTTGCGACTCTGGGCAGATCCAGGTGTTGGACGATGAAGGCAATGAGCACTGGATCTCACCCCAGAATGCCACCAACATCAAGCCCATGCACCCCACCTCCATCCACGGTGTGGAGGACATGATCCGGCTGGGAGACCTGAACGAGGCGGGGATCCTCCGCAACCTGCTCATCCGCTACAGGGAGCACCTCATCTATACCTACACAGGTTCCATCCTCGTGGCCGTGAACCCTTACCAGCTGCTGCCCATCTACACCGCTGACCAGATCCGCCTGTACACCAATAAGAAGATCGGAGAGATGCCACCTCACATCTTTGCCATTGCCGACAACTGCTACTTCAACATGCAGCGCAATAACAAGGACCAGTGCTGTATCATCAGCGGGGAGTCTGGCGCTGGGAAGACTGAGAGCACCAAACTCATCCTGCAGTTCTTGGCAGCAATCAGTGGCCAACACTCCTGGATCGAGCAGCAGGTTCTGGAGGCCAACCCCATCCTGGAAGCCTTCGGCAATGCCAAGACCATTCGCAATGACAACTCCAGCCGCTTTGGGAAGTACATTGACATTCATTTCAACAAGAGGGGGGCCATCGAGGGAGCCAAGATTGAACAGTATCTACTGGAGAAGTCCCGAGTGTGCAGACAGGCCCGTGATGAGAGGAACTACCATGTCTTCTACTGCATGCTGAAAGGAATGACCCCtgatcagaaaaaaaagttggGTTTGGGTAAAGCCACCGAGTACACCTACCTCACCATGGGCAACTGCACGATGTGTGATGGCCGCGATGACACAAAGGAGTACTCCAACATCCGGTCGGCCATGAAGGTGCTCATGTTCACAGACACGGAGAACTGGGAGATCTCCAAGCTGCTGGCGGCCATCTTGCACATGGGCAACCTACGTTACGAAGCGCGGATGTACGACAACCTGGACGCCTGTGAAGTGGTGCGTTCCCCTGATCTCACGACAGCCTCAGCTCTACTGGAGGTGGATCCCCAGGACGTGATGAACTGTCTGACCAGCCGGACCCTGATCACCCGGGGAGAGACCGTCTCCACCCCTCTCAGCATGGAGCAGGCTTTGGATGTCAGGGATGCCTTTGTAAAGGGAATCTATGGGAGATTGTTTGTGTGGATAGTAGAGAAGATCAATGCTGCTATTTACAAACCTCCATCCAGCGAACCAAAATCAGTGCGGAGATCCATAGGCTTATTGGACATTTTTGGCTTTGAGAACTTCACCGGCACTGACACCACTATGCTCTACAAGCTGAATTCCCAACACAAACTCAACACTAACTACATCCCCCCAAAGAACAGCTATGAAACTCAGTTTGGGATCAACCACTTTGCTGGTGTGGTCTACTATGAGACCAGAGGGTTTTTGGAGAAGAACAGAGACACCCTCCATGGCGACATCATACAGCTGGTCCACTCCTCCAAGAACAAGTTCATCAAACAGATCTTCCAGGCTGATGTGGCCATGGGCGCAGAAACCAGAAAACGTTCCCCGACGCTGAGCAGCCAGTTCAAACGCTCGCTGGAGCTGCTCATGAGAACGCTGAGCGTGTGTCAGCCCTTCTTCGTCCGCTGCATCAAGCCCAATGAGTTCAAGAAGCCCATGTTGTTTGACCGGGAGCTGTGTGTGCGGCAGCTGAGGTACTCCGGGATGATGGAGACCATCCGGATTCGCCGGGCAGGATACCCCATCCGCTACACCTTTGTGGAGTTTGTGGACAGATACAGGGTCCTCATGCCAGGAGTCAAGCCAGCCTACAAACAGgaAGATCTGAAAGGGACCTGCCAGCGAATCGCAGAGGCTGTTCTTGGCCGGGATGATGACTGGCAGATAGGAAAGACAAAGATCTTCCTCAAGGACCACCATGACATGCTGTTAGAGATTGAGCGGGACAAGGCCATCACAGACAAGGTCATTCTCATCCAGAAGGTCGTCCGTGGTTTCAAAGACAGGTCTAATTTCCTGAAAATCAGGAAGTCTGTCATGTTAATCCAGAAGCACTGGAGAGGATACTACTGCCGGAAGAACTACAGTGCAATGCGCATTGGATTCTCACGGCTCCAGGCCCTCTACAGGTCCCGCAAGCTGTACAAGACGTACCATGTAGCCAGGAAACGCATCATGGGCTTCCAGGCTCAGTGTCGGGGCTTCCTGGTCCGGCGGGCTTTCAGGCACCGGCTGTGGGCCGTCATCACAATCCAGGCCTATGTTCGCGGCATGATCTCCCGACGTCTGTTCAAGAGGCTCAAGGGAGAATACCGGAGGCGTCTGGAGGCTGAGAAGATGCGCCTGGCAGAGGAGGAGAAGCTGAGGAACCAGATGAGTGCTAAGAAAGCCAAAGCAGAGGCAGAGAAAAAACATCAGGAGCGTCTGGCCCAGCTGGCTCGTGAGGACGCTGAGCGGGAGAAGAAGGAACGAGAGGAGGTGCGACGCAAGAAAGAGCTGGTGGAACAGATGGAGAAGGCCAGACTGGAGCCCGTAAATGATTCGGACATGGTGGACAAGATGTTTGGCTTCCTGGGTACCACCAACTCCTTCCCAGGCCAGGAGGGGCAGGCGCCGTCAGGATTTGAGgaCCTAGAGCGCTCGCAGAAGGAGCTGCAGGAGGAGGACTTGGACGAGTCCCTGCCCCTACCAGACGACGAGGAGGATGACCTCTCAGAGTATAAGTTCGCCAAGTTTGCTGCCACCTACTTCCAGGGAACCAGCACACACACCTACATCCGCCGCCCACTGAAGCAGCCCCTACTCTTCCATGAGGATGAAGGGGACCAGCTGgctgctctggctgtgtggATCACCGTTCTGAGGTTCATGGGGGATCTTCCTGAACCGAAGTACCACACAGCCATGAGTGATGGCAGTGAGAAGATCCCGGTCATGACCAAGATCTACGAGACTCTGGGCAAGAGGACGTACAAGAGGGAGCTGCAGGCTttgcagggggagggagagAACACTCACATTGACAGCAACAAGAAGAACAGCGTGCGCCACAAGCTAGTGTCCCTCACTCTGAAGAAGAAGTCAAAGTTAACAGAGGAGGTGACGAAGAGACTAAATGATGGGGAGTACACCTTGGAGGGAAATAGCATGCTGGAAGACCGGCCTACTTCCAACCTGGAGAAGCTGCACTTCATCATCGGCAATGGCATCCTGCGCCCAGCCCTCagAAACTTCATCAGTGGTGGTCCACCTGGCTATGCCCCGTATTGCGAGGAGCGGCTGAGAAGGACGTTCGTTAATGGGACGAGAACACAGCCACCCTCCTGGCTGGAGCTGCAGGCCACCAAGTCAAAGAAGCCCATCATGCTGCCTGTGACATTCATGGATGGCACAACCAAGACCCTGCTGACGGACTCGGCCACCACAGCCAAGGAACTGTGTAACTCACTGGCTGACAAGATCAGCCTGAAGGACCGTTTTGGCTTCTCCCTTTACATCGCCTTATTCGACAAGGTGTCCTCACTGGGCAGTGGGAATGACCACGTGATGGACGCAGTGTCACAGTGTGAGCAGTATGCCAAGGAGCAGGGGGCACAAGAACGCAATGCCCCCTGGAGGCTCTTCTTCCGCAAGGAGATCTTTACACCCTGGCACAACCCCAGTGACGACAACGTGGCCACCAACCTCATCTACCAGCAGATCGTCAGGGGGGTCAAATTCGGGGAGTACCGCTGCGACAGGGAAGAGGACCTTGCTGAGCTGGCCTCCCAGCAGTACTATGTAGACTATGGATCAGAGGTACTCCTGGAGCGACTGTTGAGCCTTATCCCCTCGTACATCCCTGACCGAGAGATCAGCGCCTCCAAGACCGTGGAGAAGTGGGCGCAGTTTATCATGGCAGCacacaaaaagGCCCCAGCCTGCCAAAGAATGATGTGATTGTGGCTGTGAACTGGACTGGAGTTTATTTTGTTGATGAACAAGAGCAAGTCCTTCTGGAGCTCTCCTTCCCTGAAATCACCGTTGTGTCCAGCAGCAGAGGAGGCAAGTTGCAAGGTCAGAGCTTCACATTGGCGACCATCAAAGGTGACGAATACACTTTCACCTCCAACAACGCAGAGGACATCCGAGATCTGGTGGTCACCTTCCTGGAGGGTCTAAGGAAAAGGTCAAAGTTCGTAGTTGCCCTGCAGGACAACCCAAACCCTGCTGGAGATGAGTCCTCGTTCCTGAGTTTTGTGAAGGGGGATCTCATTCTGCTGGACCAGGACACTGGAGAGCAGGTGATGAACTCTGGCTGGGCTCATGGCATCAACGATAGGACCAAGCAGAAGGGTGACTTCCCTGCCGACTGTGTCTACGTGCTGCCCACCGTCACCAGACCACCCTCTGAAGTTGTGGCCTTGGTAACCATGACTCCCGATCAGAGGCAGGATGCCATCAGGACCTCTCAGCTGTCTCTGGTGGAGACCGAGGAGAAAGTGAAGCCCTACACCCTGGAGGAATTCTCCTACGATTACTTCAGACCTCctcccaaacacacactcagCCGGGTTATGATCAATAAAAGCCGAGGGAAGGATAAGCTGTGGTGCTGCACCCGGGAGCCCATCAAACAGCCCTTGCTGAAGAAAGTCCTCAGCCATGAAGAGCTCTCCCAGGAAGCCTGCATGGCCTTCATTGCGATGATGAAGTATATGGGAGATTACCCTTCCAAGCGCACGCGCTCTGTGAATGAGCTGACGGACCAAATATTCGAAGGTGCCTTGAAAGCAGAGCCACTCAAAGATGAGATCTTCTGCCAGATACTCAAGCAGCTCACGGAAAACCATGTCAAGTACAGTGAGGAGAAGGGCTGGGAGCTGCTGTGGTTGTGCACCGGCCTATTCCCTCCCAGTAACATGCTTCTGCCCCACGTCCAGCGGTTCCTCCAGTCTAAGAAGCACCACCCACTGGCCCCAGATTGCATGCAGAGACTACAAAAGGCCCTCCGAAATGGATCCAGGAAGTACCCACCTCATTTGGTGGAGGTTGAAGCCATTCAGCACAAAACCACCCAGATCTTCCATAAAGTGTACTTCCCTGATGACACAGATGAGGCGTTTGAAGTGGAGTCGAGCACAAAAGCAAAGGACTTCTGCCAGAATATCTCCGGCAGGCTGCTGCTCAAGTCCTCGGAGGGCTTCAGCTTGTTTGTTAAGATTTCTGATAAGGTGATCAGTGTTCCAGAGGGGGACTTCTTCTTTGACTTTGTGAGGCATCTCACAGACTGGATCAAGAAAGCCAGGCCAGCAAAGGAtgGTATTGTGCCTTCTTTAACCTATCAGGTGTTCTTTATGAAGAAACTCTGGACACACACAGTTCCTGGAAAGGATTCCATGGCGGACTCTATTTTCCACTATTATCAGGAGCTGCCCAAGTACCTGCGAGGCTACCACAAGTGCTCACGGGAGGAAGTGTTCCAGCTAGGGGCCCTAATCTACCGTGTCAAATTTGAGGATGACAAGTCCCACTTCCCCAGCATCCCCAAGATACTCAAGGAGCTGGTGCCACAAGACTTGATTCGCCAGCTGTCCCCTGATGACTGGAAACGGTCCATCGTAGCTTATTTCAACAAGCAAGCAGGAAAGTCAAGAGAGGAGGCGAAactcatgtttttaaaaatcatctTCAAATGGCCGACCTTTGGATCGGCATTCTTCGAAGTTAAGCAAACCACTGAGCCAAATTTCCCAGAGATCCTGCTGATTGCCATAAACAAGCATGGGGTCAGCTTGATTGATCCAAAGACCAAGGACATATTGACCACCCACCCATTTACTAAGATCTCCAACTGGAGCAGTGGCAACACCTATTTTCACATCACGATCGGGAACCTTGTGCGAGGCAGCAAGCTCCTGTGCGAGACCTCACTGGGCTACAAGATGGACGATCTCCTGACCTCATACATCAGCCAGATGTTGACCACCATGACCAAGCAGCGCAGTGCGCGGGGCAGCAGCAAGTGAACTGAGCGCGAGCAGTGGCACCGGGCTCTGGAGCTCCTGCGTCTGCTTCGTCCCCTGGGCAACCCCTGCAGCTGGGCCAGCACCTTCTCCACCCAGGTGTGGAGGATGAGCCGCAGCCCCTCCTTGAGCTCCATGGACACCGACACTGACGAGAACAGCCCCACCTCTCCCTCCAGCGAAGACGACTACCTCTGATCTAGCGGCCCTGCGGCACAGTCCCTTTACTGCACAGCTGCTAACTAAGGTCAGGGCCCCAGGTCTGGACTAAATCAATCGCATTTACCCCATGTCCTATAAatgctcccacacacacacacacacacacactattgcCAGGCAAGTGCTAAATGTTACGGCAACTACAGTCTGAAACTGGGGCATGCCTTTGTCATCTGACGCAAGCCAACAAGcgcaaataaacacacacacatgtagtTATCCGAGCCTTTCCACTGCTAACCTGTTGGGTGGTGTCTCCGAAATACACTACTAGCAGACAGAACAGTTGCCAAGACAAAATTGCCTTGTCAGTCATTAGGGGGACAATCGGTCAATGAGGTTTTATCCTGAGTAGCAGGGATTCAGTCTGCAACTAGGGAGCCTATTATAAACCAGCACAAGGGAATGTAATCTGAATGGAGACATTAAAAGTGATATTTTGTTATCACTGTACAGTGATCAGGAAACTACTATGTAAAATAACGCTAATTCTTTACTGAACATCAAAGTGTATTGGTGGATTTAATGGTTGTGTTAGAGTGTCCAGGAAGTTGGCAGTTCCTTCTTGCTCGTACCTGGGTCCTTGGTCAGCTATCTTTGTCATTGGGGTCAAAACTGCAAAGCCTTTAGCTTTTTGAGTCATACTTCATTCAGTTTTTCACCGTTGTAAACGGCATGGAccagattaaatgaaattatcatttttgtattgttattattatgaaatgctAGTTAGAGTAATAAGGAATATGAACACatcttgttgttattattatttatctctgTTAAATGGTTGAGCAAATCAGAACGTTTGCCCGCCTCACAGTATTGCTTGGTTTAGACAATGTATTCACGTTTTGTCCAGTGACTCGCTGATTCTTGACTTCCCTCAATATTGCACTGTTTCAAAGACTCTGGGGTTGGCTCATGTCTCTGTgaatgtattgctttgttattCAGGTGCTAGAACAGAAATAAGTTTCAGtctataaaactatataaagaAAGATGAGAGGCATCTCAAATTACACTCACTGGTGGCCTTAACATGCCTGTCTGAAACCTGCTGAAGATCTCATACTGAAAGCCTGGATGTTGGAATGGCAATTGGCATTACTATTCCACTAGCAAGTATTACTGAAGATCAGGGATAGGCAATTACCATCCACAGGACTGTACCCCATTGCCGAAGGGGTTTTCATTTCACCtcaggtcttaattactttatttattggaGTAATTATTATGATAAGAAATCAAGACCTGTTAATGCCCGGTCTTAATCAGATACTCATTGAAAGGTACCTATAAAATCTGCTAGAACCGGACCCTTAAGGACTGGAGTTGCCTAACCTGCTCAAGAAACAATATTTTCCCTCCTTAGGAAACCGTATTATCAGTGTAGCACCAGATGTTGGTCCGTGTTTACAGCTGTTGACGCAGTTTTGCTCTTAATCACCTGGCTtcgtttaataataaaaacaaagtgcacTGGACAAGGAGACTGAGAAAAGTATGTCAGAAATCACAGAGTGTTTATGCATCATAGGAATTTGCTTCATTCTAGGCTTAAATTCACTCATGGCCTTTGAAAATGCACCATAATGCACAGTTCAAtcagaattttgtttttgtcttctcgTTATCATTGTTCGAATCTTGTCACCCACTCTTAGTCTGTAGTGCTCCCCATTTTGCTCCAATTAAAGATGATTGTGTGCAACTGTTAGTGtcataataatgtttaatattttttaaataatgatgctgttcttttttgtttttgcggTCCACTAAATTAGGTGGTCTTGTTTTATGgtactggtgtttttttttttttttttttaactaatacTTACCG

Function

symbol description
myo7aa Predicted to enable actin filament binding activity and microfilament motor activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception; neuron differentiation; and protein localization to cilium. Predicted to be located in cytoskeleton. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; microvillus; and vesicle. Is expressed in brain; otic vesicle; sensory system; and tether cell. Human ortholog(s) of this gene implicated in Leber congenital amaurosis; Usher syndrome (multiple); auditory system disease (multiple); and congenital nystagmus. Orthologous to human MYO7A (myosin VIIA).
myo7a Enables calmodulin binding activity; cytoskeletal protein binding activity; and microfilament motor activity. Involved in several processes, including equilibrioception; lysosome organization; and visual perception. Acts upstream of or within sensory perception of sound. Located in several cellular components, including lysosomal membrane; photoreceptor inner segment; and photoreceptor outer segment. Implicated in Leber congenital amaurosis; Usher syndrome (multiple); auditory system disease (multiple); and congenital nystagmus.

NR:

description
PREDICTED: unconventional myosin-VIIa-like

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0060122 inner ear receptor cell stereocilium organization biological_process
GO:0035315 hair cell differentiation biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016368 True 8232 mRNA 0.50 45 17380431 17413600

Neighbor

gene id symbol gene type direction distance location
AMCG00016361 NA coding downstream 85556 17293088 ~ 17294875 (-)
AMCG00016354 NA coding downstream 233446 17145993 ~ 17146985 (-)
AMCG00016352 NA coding downstream 257192 17122706 ~ 17123239 (-)
AMCG00016353 NA coding downstream 262696 17103974 ~ 17117735 (-)
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding downstream 308984 17040305 ~ 17071447 (-)
AMCG00016367 capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883 coding upstream 13904 17427504 ~ 17460486 (-)
AMCG00016369 dcun1d5,LOC106612886,LOC107600360,LOC107712802 coding upstream 53083 17466683 ~ 17472931 (-)
AMCG00016375 cul5,LOC107714978,LOC107554266 coding upstream 61818 17475418 ~ 17490419 (-)
AMCG00016374 NA coding upstream 90280 17503880 ~ 17506443 (-)
AMCG00016381 NA coding upstream 264530 17678130 ~ 17686737 (-)
G13091 NA non-coding downstream 2892 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 93602 17284403 ~ 17286829 (-)
G13045 rps3 non-coding downstream 134101 17241944 ~ 17246330 (-)
G12978 NA non-coding downstream 455759 16918566 ~ 16924672 (-)
G12921 NA non-coding downstream 588762 16791423 ~ 16791669 (-)
G13126 NA non-coding upstream 80255 17493855 ~ 17494346 (-)
G13129 NA non-coding upstream 82323 17495923 ~ 17496347 (-)
G13254 NA non-coding upstream 749187 18162787 ~ 18165770 (-)
G13334 NA non-coding upstream 1412594 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 1644805 19058405 ~ 19058673 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 113684 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 510429 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 519252 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 905261 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2588462 14785198 ~ 14791969 (-)
AMCG00016376 NA other upstream 124434 17538034 ~ 17541342 (-)
G13367 NA other upstream 1677639 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 2715308 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3202909 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 3252542 20666142 ~ 20683024 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_06334522_06363794 MYO7A, MYO7AB coding CI01000006 null 6333739 ~ 6366270 (-)