AMCG00016376


Basic Information

Item Value
gene id AMCG00016376
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17538034 ~ 17541342 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016376
CACTAGCCCTGATTCCATGTGCCAACCCGAGCCGTTCCCTCAAGAAATCCTTCTGCCAGGCTTTCCAGGCTTTGTTGCCTTCACTCAAGTCTCTAAAAGCACAACACTGAGCACATCATCTTCAGAGAGGGACTCCCAGCTTGCAATGCAGCGAGAGCGTCAAGCAGAGCAGGCGTTATCACAATGTGACAAAAGACCAGTCTCCTGTGCTGATGAGGTCAGGTCACCCTACCCCCGTGCTTGCATCACTTGGCACGAGAGGACAGAAATCGAGGAGACTCAGTCACTCCCAGCCCAGATGGACCTGGACGATAAGAAACCTGCCTGCAGGACTGTGACCCTCAGAGCATTTCCATTTGGGACACAGAGGGGGCGTGGTGTTTCCAATCGAGCGTGTCTCCAGTGTGCCACGGTTGAGCCTGCTGACAAGGTCTCCTTTAGTCCTCCAATCCAGCCCTCTCCCAGAGTCCAGAGCAGAATGGATCGCTCCGCACAAGAGCTCTTCCTAAACTTCATGATCGTTTTAATCACAGTGCTGCTCATGTGGCTACTTGTCAAATCCTACCAGGAGTGAGGCCTGTCCCATGGAAACTGGGATCTCCCTCCAGAGGCACCACTTAGATCCAGTAATGGAGAAACGTAGAGCTGAATAACACTGTTTGCTTAGAGCAGGTGGCCTCTGACAGTAGGGCTAAAACAGCTATGGCATGAGCACTTGTATTCACTACTGTAACCCTAAAATGAGACTTTCTATACATCCCACCTTTTAGAGCAAAACAATTATTACAATCATGCTGACagccacaaaaaaaagaaagaaaaaggatctTGTGTTCTTTAACCTCTGAAAGTCATACCTCCTATTTTGTCTTTACTGCTACCATGTAAGCATCTGTGAACTGCTTGGCACATCTCTCTATGGCATAAATTTGCTCTGTATTTTCTAAAAATCTTTTCTTGTACAAGGCTTTCAATACCACTACATTATAAAAGGCACTGCAATGGTGATCCTGTTTATAAAGCTCTGAGAGTCGGGTGTTACGAAGCATGACATAGACCTGACTTATTTACAAGCAAAGATGTTGTAAAAACATATGTGAATCTTCTGTGTACATTTATGTTTACACTTTGTATAATAAAAAGGCTTCTGTCAGACAA
>TU16302
atcccctccctctccctacTTTAGAGGAGACTCAGTCACTCCCAGCCCAGATGGACCTGGACGATAAGAAACCTGCCTGCAGGACTGTGACCCTCAGAGGTACCTCAGAGTACTAACTATACATCTGTCCACGTTTCCAGCCAGCATTTCCATTTGGGACACAGAGGGGGCGTGGTGTTTCCAATCGAGCGTGTCTCCAGTGTGCCACGGTTGAGCCTGCTGACAAGGTCTCCTTTAGTCCTCCAATCCAGCCCTCTCCCAGAGTCCAGAGCAGAATGGATCGCTCCGCACAAGAGCTCTTCCTAAACTTCATGATCGTTTTAATCACAGTGCTGCTCATGTGGCTACTTGTCAAATCCTACCAGGAGTGAGGCCTGTCCCATGGAAACTGGGATCTCCCTCCAGAGGCACCACTTAGATCCAGTAATGGAGAAACGTAGAGCTGAATAACACTGTTTGCTTAGAGCAGGTGGCCTCTGACAGTAGGGCTAAAACAGCTATGGCATGAGCACTTGTATTCACTACTGTAACCCTAAAATGAGACTTTCTATACATCCCACCTTTTAGAGCAAAACAATTATTACAATCATGCTGACagccacaaaaaaaagaaagaaaaaggatctTGTGTTCTTTAACCTCTGAAAGTCATACCTCCTATTTTGTCTTTACTGCTACCATGTAAGCATCTGTGAACTGCTTGGCACATCTCTCTATGGCATAAATTTGCTCTGTATTTTCTAAAAATCTTTTCTTGTACAAGGCTTTCAATACCACTACATTATAAAAGGCACTGCAATGGTGATCCTGTTTATAAAGCTCTGAGAGTCGGGTGTTACGAAGCATGACATAGACCTGACTTATTTACAAGCAAAGATGTTGTAAAAACATATGTGAATCTTCTGTGTACATTTATGTTTACACTTTGTATAATAAAAAGGCTTCTGTCAGACAATCGC

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016376 True 1158 mRNA 0.46 3 17538038 17541342
TU16302 False 959 lncRNA 0.30 2 17538034 17540345

Neighbor

gene id symbol gene type direction distance location
AMCG00016374 NA coding downstream 31591 17503880 ~ 17506443 (-)
AMCG00016375 cul5,LOC107714978,LOC107554266 coding downstream 47615 17475418 ~ 17490419 (-)
AMCG00016369 dcun1d5,LOC106612886,LOC107600360,LOC107712802 coding downstream 65103 17466683 ~ 17472931 (-)
AMCG00016367 capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883 coding downstream 77548 17427504 ~ 17460486 (-)
AMCG00016368 myo7aa,myo7a,LOC107660700,LOC106581013 coding downstream 124434 17380431 ~ 17413600 (-)
AMCG00016381 NA coding upstream 136788 17678130 ~ 17686737 (-)
AMCG00016384 LOC107548160,LOC108279362,LOC108440167,LOC103155416 coding upstream 155587 17696929 ~ 17704385 (-)
AMCG00016385 gria4 coding upstream 174426 17715768 ~ 17716983 (-)
AMCG00016383 gria4,gria4a,gria4b,LOC107756206 coding upstream 199290 17740632 ~ 17748750 (-)
AMCG00016382 LOC107706429,LOC107681140,LOC107548160,LOC107718985 coding upstream 244516 17785858 ~ 17787095 (-)
G13129 NA non-coding downstream 41687 17495923 ~ 17496347 (-)
G13126 NA non-coding downstream 43688 17493855 ~ 17494346 (-)
G13091 NA non-coding downstream 160495 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 251205 17284403 ~ 17286829 (-)
G13045 rps3 non-coding downstream 291704 17241944 ~ 17246330 (-)
G13254 NA non-coding upstream 621445 18162787 ~ 18165770 (-)
G13334 NA non-coding upstream 1284852 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 1517063 19058405 ~ 19058673 (-)
G13341 NA non-coding upstream 1536026 19077368 ~ 19077823 (-)
G13366 NA non-coding upstream 1546882 19088224 ~ 19088632 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 271287 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 668032 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 676855 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 1062864 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2746065 14785198 ~ 14791969 (-)
G13367 NA other upstream 1549897 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 2587566 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3075167 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 3124800 20666142 ~ 20683024 (-)
G13962 NA other upstream 5913750 23455092 ~ 23455811 (-)

Expression


Co-expression Network