AMCG00016396


Basic Information

Item Value
gene id AMCG00016396
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18259160 ~ 18262198 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016396
ATGCAGCTCACCGTGGCGCTGCTGGGCATCCTGCTCCTCGGGGTGAGCAGCAGCCTGGGCGACATTCCTGCCAACTGCTCGTATGAGGACTTAGTGGGGACCTGGATGTTTCAAGTGTCCAAAGGTGGCCAGGATCAGAAAATAAACTGCACCAAAATGGGACCTGCAGTAAAAACTGTGACTGTCCGCCTGGAGAAGTTAGATGTGGCCTCAGATGAGCTGGGAAACACTGGCTTCTTCACTTTGATTTACAACCAGGGATTTGAGGTGGTGCTGGCAGACTACAAGTGGTTTGCATTTTTCAAGTACACGGATGAAGGGGGGAAAGTGACGAGTTACTGTGACCAGACCCTCCCGGGGTGGGTGCATGACGTCCTGGGACACAATTGGGCCTGTTTTGTAGGAAAGAAGGTGTCTTCTGCTCCACTCAAGCCCTCTCAACCCTACAAACACAATCCAGATTTTGTGAAAGCCATCAATGCTGTGCAGAAATCGTGGACCGCCACCCACTACAGTGAGCACGAAATGCTTACCAACGAAGAGCTGATCAGAAGATCTGGAGGCCGTGGCTCACGCATCCCAAGGCGCCTCCGGCCAGCTCCTGTCACAGAGGAAGTAGCCAAGTTTGCTGCCGGGTTGCCGGAGTCGTGGGACTGGAGAAACGTTAATGGCGTCAACTATGTCAGCCCTGTCCGTAACCAA

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01275 CTSC; cathepsin C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016396 True 702 mRNA 0.53 5 18259160 18262198

Neighbor

gene id symbol gene type direction distance location
AMCG00016395 rab38 coding downstream 16831 18229111 ~ 18242329 (-)
AMCG00016392 fzd4,LOC107600811,LOC107551868 coding downstream 167603 18086767 ~ 18091557 (-)
AMCG00016391 dync2h1,LOC106613214 coding downstream 189595 18020039 ~ 18069565 (-)
AMCG00016389 dync2h1,LOC106613216,LOC108413322,LOC107566891,LOC103461033 coding downstream 254527 17985431 ~ 18004633 (-)
AMCG00016390 dync2h1,LOC106613216,LOC106593015 coding downstream 311024 17935136 ~ 17948136 (-)
AMCG00016398 grm5 coding upstream 12032 18274230 ~ 18292859 (-)
AMCG00016399 grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107556864,LOC107701127,LOC107555132 coding upstream 67995 18330193 ~ 18349377 (-)
AMCG00016400 NA coding upstream 118266 18380464 ~ 18399758 (-)
AMCG00016401 NA coding upstream 158555 18420753 ~ 18436028 (-)
AMCG00016402 NA coding upstream 635358 18897556 ~ 18901581 (-)
G13254 NA non-coding downstream 93390 18162787 ~ 18165770 (-)
G13129 NA non-coding downstream 762813 17495923 ~ 17496347 (-)
G13126 NA non-coding downstream 764814 17493855 ~ 17494346 (-)
G13091 NA non-coding downstream 881621 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 972331 17284403 ~ 17286829 (-)
G13334 NA non-coding upstream 563996 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 796207 19058405 ~ 19058673 (-)
G13341 NA non-coding upstream 815170 19077368 ~ 19077823 (-)
G13366 NA non-coding upstream 826026 19088224 ~ 19088632 (-)
G13392 NA non-coding upstream 903388 19165586 ~ 19253414 (-)
AMCG00016376 NA other downstream 717818 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 992413 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 1389158 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 1397981 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 1783990 16470611 ~ 16475170 (-)
G13367 NA other upstream 829041 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 1866710 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 2354311 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 2403944 20666142 ~ 20683024 (-)
G13962 NA other upstream 5192894 23455092 ~ 23455811 (-)

Expression


Co-expression Network