AMCG00016400


Basic Information

Item Value
gene id AMCG00016400
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18380464 ~ 18399758 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016400
TGCGGGATGagtaatttatttgtgttttaacagCCTAGGGGGGGAGGAACCCGTTCCCGGATGGAGCTACATCTTAGTTTACATCTATGCCGACCACATTAAACCAAAGTGCTGGGTTTGCTGGGCAGCGCTCCCCCCAGGCCCGACACACCAGGACGGGACACAAGTTCCCACAACCAACCAAGTGCATATCATTGGCAACGTGAACCGAGCCAGTCCGACAGGATGAGCCTGGAGAGAGTGGAGATCAAAGCGCAGCAGAGCAGCCGCGTTAGCGCCATTGGCAGCACAGGACGCCGCTGAAAGCCTGGCGGGGTGGGAGGGGGTCTCTGCAAACTCCCCAACTGTTTAGTGTGAAAACATGGCTTTGTTCTGGAAAAGTTGGATAGCTAATGAGGGTGGAAAACACATATTTCTGctTTTGTGGTTGACTACGAATATCTGTCtgttttggaaaacatttgtgttgtaCTACAGTGGTCCGCAGTATTATTACCTCTATAAGATGCTGGGGCTAggattgtgtgttagcagggccTCAGCATCTGTCCTCAACCTCAACTGCAGCCTTGTGCTCCTTCCCATGTGTCGGTCTCTCCTGGCCTTCATCAGAGGATCTCAGAAGGTAACTGGTAGGAAAGTAAGGCGCTTGCTGGACAAAAGTAAGACTTTCCATGTGGCTTGTGGTGTTGCCATATGTGTCTTCTCCGTGGTTCATGTAGTGGCTCACATGGCCAATGTGCTCAGCTTCTCTCTGCGATACAGTGAGGAATTCCCAGCGCTGAATGTGGCTCGCTACAGGGGagaaGATCCTCGAATTATTATCTTTACCACTGGGATAACTGGAGTTCTTTTGGTACTGATACTTTTCTTGATGTTTACAGCCTCGTCGTACTGCATAAGGGTATCTAGCTATGAAATATTTTGGTACACCCACAATCTTTTCATTGTCTTCTACATCCTGCTACTGGTGCATGTAATTGGAGGTGTACTGAAGTATCAGGCCAATATTGACACTCATCCTCCAGGCTGTTTCAAGCCCAACAAAACTGGCCAGGACCCAGAGCCCAAGCTGGAGACTGCTCTTCAACCCTCACTTCATCATTCCCTGGGGCTTTCCCCAACGGAGAACTTTGGCAAAGTCTGCAAAGAGGAGCCGCACTTCCAGTCACACTTTCCTGAGACGTGGCTGTGGGTGTCTGGGCCTCTCTGTCTGTACTGCGCAGAAAGACTATACCGGTACATTCGAAGCAGCACACCAGTTACCATCGTCTCTGTCGTCAGCCACCCGTGTGATGTCATCGAGGTGCGAATGCTGAAAACAAACTTCAAGGCCAGACCTGGACAGtatattgttttacaatgtCCAAGTGTGTCGTCCTTTGAAAGCCATCCTTTCACTCTCACAGCGtgTCCAACAGACAGGAAAGCAACATTTGGCATCCATCTTCGAGTGCTTGGAGACTGGACTGAAAGATTTCAGGAGTTATTGCTTCCAGAATCAGACATGGAGATTCTACCCATAGTTCAACAAAGAAGATATCCAAAGTTGTACATAGATGGGCCATTTGGGAGTCCTTCTGAGGAAGTGTTTAACTATGAAGTCAGCCTATGTGTTGCAGGGGGAATCGGAGTCACTCCCTTTGCGTCTGTCTTGCACACCTTGCTaGATGAATGGCAGCTTTATAAACTGAGGAGACTCTATTTCATCTGGATTTGCAGAGAACTTCAGTCATTCTATTGGTTTGCTGATCTACTGTGTGCTTTGCATCAAAAgCTTTGGCAAGAAAACCGGCCTGACTACTTAAATGTCCAGCTTTACCTCAGCAAAGCAGATGGTTTACAGAGTATCAGTGGGGAGAGGTACAGAGCTTTGAATTCTAGGCTACTCATAGGAAGGCCAAGGTGGAAACTTCTCTTTGAAGAGATTGGAAAATGCAACAGACAGAAACGTGTTGGTGTGTTTTGCTGCGGGCCCAAGGAGATCTCAAAGACCCTGCACAAACTCAGTAACAGTACTGGTTCCTTTGGTACCACATTTGAATATAACAAGGAGTCATTCAGCTGAAATGAGGTCTTTTtagaaatctttttttataaactgaAGTGTGGTGATGGGAAAGGACAGTGaggtgaagaagaagaaaaggatgCATTGTTTCTTTATGCAGGATGAAAAATGGCTACAAGATCACTGGACAAAATCCTAATTTCAAACAAATGGCAACCTCATAATGTTAGCTTTAACATGTAGCAGAATAAAAGGGACGTTTACGAATCTGTAATAAGCATGactttttcaaaatacttttgtattCTGAAGCAGGATAAGTTTAAGAGGTATTATACATTTCCAGCTTTGAGaattgtggggggaaaaaagtgtaatttgatGTAAAATGTGCTTAATGTAATGGTGTGCAGATTTGTCAATCATTATATTCTATGCAGTTTGTCAAAACGTATAGTCAAAGTCAAAGTGTAAATACaggtataatttaaaaatctatagTTCTCACTGTTGCAGTATAGTTCTCTATCACAGTCATAAGAATGTTTcgcattaaaataattttaaatattttcaataactTTTTCAAGCatgttaatgtttattatagtttttcaattacaaaggcattatattgtatatcttgtattcattttaattaattttgattcaCTTTGAAAGTATTTTCCTTTTGAACACTGAGtttattgtgaaacatttaatttaaatttatggAAAGGATCAACTCCAATGTCCCCAAGTGCTTTTCATATtcctttttattaataaaagagAATTGCGGTTTA

Function

GO: NA

KEGG:

id description
K21423 NOX4, RENOX; NADPH oxidase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016400 True 2817 mRNA 0.43 18 18380464 18399758

Neighbor

gene id symbol gene type direction distance location
AMCG00016399 grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107556864,LOC107701127,LOC107555132 coding downstream 31087 18330193 ~ 18349377 (-)
AMCG00016398 grm5 coding downstream 87605 18274230 ~ 18292859 (-)
AMCG00016396 NA coding downstream 118266 18259160 ~ 18262198 (-)
AMCG00016395 rab38 coding downstream 138135 18229111 ~ 18242329 (-)
AMCG00016392 fzd4,LOC107600811,LOC107551868 coding downstream 288907 18086767 ~ 18091557 (-)
AMCG00016401 NA coding upstream 20995 18420753 ~ 18436028 (-)
AMCG00016402 NA coding upstream 497798 18897556 ~ 18901581 (-)
AMCG00016403 NA coding upstream 606325 19006083 ~ 19014749 (-)
AMCG00016404 NA coding upstream 626080 19025838 ~ 19039504 (-)
AMCG00016409 NA coding upstream 709384 19109142 ~ 19143518 (-)
G13254 NA non-coding downstream 214694 18162787 ~ 18165770 (-)
G13129 NA non-coding downstream 884117 17495923 ~ 17496347 (-)
G13126 NA non-coding downstream 886118 17493855 ~ 17494346 (-)
G13091 NA non-coding downstream 1002925 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 1093635 17284403 ~ 17286829 (-)
G13334 NA non-coding upstream 426436 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 658647 19058405 ~ 19058673 (-)
G13341 NA non-coding upstream 677610 19077368 ~ 19077823 (-)
G13366 NA non-coding upstream 688466 19088224 ~ 19088632 (-)
G13392 NA non-coding upstream 765828 19165586 ~ 19253414 (-)
AMCG00016376 NA other downstream 839122 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 1113717 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 1510462 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 1519285 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 1905294 16470611 ~ 16475170 (-)
G13367 NA other upstream 691481 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 1729150 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 2216751 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 2266384 20666142 ~ 20683024 (-)
G13962 NA other upstream 5055334 23455092 ~ 23455811 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000242_00048189_00052623 NOX4 coding CI01000242 null 48189 ~ 52644 (+)