AMCG00016404


Basic Information

Item Value
gene id AMCG00016404
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19025838 ~ 19039504 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016404
TTAAGAAGGACCAGACCCATCCCTGTGATAAACGCCAGCACCGCTTCAGAGGAAACGCGCATGTGCGGCGGAAGATGGGCGCACGGGAACAGCTAGACATGGAGGTAATGGCCCCTCTAATTGAGGAGACTGGGCAGTGTTCTGAAGACATTTCTGATGAGGATCAAGATCCTGAATTAGTTGCAGTACAGAGGCATTATGAGCTTGGCAATCATCAGGGCATTACGTTTGCACAAACCCTTATACATCTGTTAAAGGGAAATATTGGAACTGGTCTCCTTGGCCTTCCGCTTGCATTGAAAAATGCCGGAATTGTGGTGGGACCCATAAGCCTGATACTGATGGGAGTGGTAGCTGTGCATTGTATGCATATTCTGGTCCGATGCAGCCATCTCCTATGTGAAAGattGAAAAGACCTCCCTTAGGATACAGTGACACCGTAGCGTTAGCGATGGAACACGGCTCTTTGAAGTGCCTTAAAAAGGGGGGCACGTTCGGCAGGTATCTAGTTAGTTTCTTCCTTGTTTTGACGCAGCTGGGATTCTGCAGCGTGTACTTCGTGTTCCTGGCAGAGAATATCAAGCAGGTTGTCGAGGGCTACTGGAGGAACGGCACAGAGATTCCTCACTCCTATGGCAATGGCTCCACAGCTGTCCAGCAGGACTGCGGTGGCCTGGACCTGCGTGTGTACATGCTGTGCTTCCTGCCCTTCTTCATCCTCCTCGTGTTCATCCGAGACCTGAAGAACATGGCGGTGCTTTCGTTTCTGGCCAACGTGTCAATGGCTGTCAGCATTGTCATCATCTTCCAGTATATACTAAGGGATGTGGGGGACCCACGTGGACTTCCTTATGCATCCAGTTGGAAAAAATATCCCTTTTTCTTCGGcacagcaatttttgctttcGAAGGAATAGGC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K14209 SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016404 True 920 mRNA 0.50 8 19025838 19039504

Neighbor

gene id symbol gene type direction distance location
AMCG00016403 NA coding downstream 11089 19006083 ~ 19014749 (-)
AMCG00016402 NA coding downstream 124257 18897556 ~ 18901581 (-)
AMCG00016401 NA coding downstream 589810 18420753 ~ 18436028 (-)
AMCG00016400 NA coding downstream 626080 18380464 ~ 18399758 (-)
AMCG00016399 grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107556864,LOC107701127,LOC107555132 coding downstream 676461 18330193 ~ 18349377 (-)
AMCG00016409 NA coding upstream 69638 19109142 ~ 19143518 (-)
AMCG00016410 NA coding upstream 115830 19155334 ~ 19161728 (-)
AMCG00016414 NA coding upstream 145434 19184938 ~ 19205594 (-)
AMCG00016419 NA coding upstream 237794 19277298 ~ 19279668 (-)
AMCG00016420 mre11a coding upstream 242198 19281702 ~ 19316677 (-)
G13334 NA non-coding downstream 123862 18826194 ~ 18901976 (-)
G13254 NA non-coding downstream 860068 18162787 ~ 18165770 (-)
G13129 NA non-coding downstream 1529491 17495923 ~ 17496347 (-)
G13126 NA non-coding downstream 1531492 17493855 ~ 17494346 (-)
G13091 NA non-coding downstream 1648299 17375266 ~ 17377539 (-)
G13339 NA non-coding upstream 18901 19058405 ~ 19058673 (-)
G13341 NA non-coding upstream 37864 19077368 ~ 19077823 (-)
G13366 NA non-coding upstream 48720 19088224 ~ 19088632 (-)
G13392 NA non-coding upstream 126082 19165586 ~ 19253414 (-)
G13413 NA non-coding upstream 217134 19256638 ~ 19256919 (-)
AMCG00016376 NA other downstream 1484496 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 1759091 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 2155836 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 2164659 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 2550668 16470611 ~ 16475170 (-)
G13367 NA other upstream 51735 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 1089404 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 1577005 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 1626638 20666142 ~ 20683024 (-)
G13962 NA other upstream 4415588 23455092 ~ 23455811 (-)

Expression


Co-expression Network