AMCG00016425 (mtmr2)


Basic Information

Item Value
gene id AMCG00016425
gene name mtmr2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19446554 ~ 19455857 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016425
AAAGATGGCAGCTTCCTGTCCCTGTACCAGCTGTGTGCTGTGATAGGAGCCTGTTGGGAACATAGGGCTCTCTGTTCATTTGCGCTGGTGTGGCTTTCTGTCTCTCTAGCTTTGAGTTTCCTCAGACGCAGGCAGGCGACCGCGGCCATGGAGAAGAGCGGCAGCAGCGACAGCCTGGGGTCCCAGCGGTCCTCCTCCCGGCAGCCCAGCGTGGACTCGCTCGCCAGTACTTCCACTTCCACCTCTCGGTCCGACCGCTCTTTTCAGGCGAAACCTCCGTCTGCTCTCTCCTCTGACTCGGTCtccacttccactgagttctccCCTGAGCTCAGGGGTAAAAGCATTCCAGATGTTAAGGTGCTAAGGGACGCTAATAAATTGGCTCAATTGGAAGAACCTCAATTACTACCCAAGGAATCCATACAGGATATGGcTAAAGATGTGACTTATATCTGTCCATTTGTTGGTGCTATAAGGGGAACCATGACTGTTACTAACTACagactgttttttaaatgcatagaaAGGGATCCAGCATTCGTCCTGGACCTTCCCCTGGGAGTGATCAGCCGCATCGAGAAGATCGGCACGGCCTCGAGTCGTGGGGAGGTTTCTTTCGGACTCATCTGCAAAGATATACGAAATCTGAGGTTTGCTCATAAACAAGAAGGTCACAACAGGAGGTCGATATTTGAGACCCTCATGAAATTTGCATTTCCCATTTCCAATAGCATGCAAGTCTTTGCATATGATTATGGACAGGTTTTCCCTGAAAATGGCTGGAAGATGTATGATGCCATTTCTGAATATAAGAGACAGGGCTTGCCCAATGAAAGCTGGCGAATAACGAAGGTCAATGACCACTTTGAGCTGTGTGACACCTACCCCGCTGTACTGGTCGTACCTGTCAACATTCCTGATGAAGAGCTGAAGAGAGTTTCAGCCTTCAGGGCCAAAGGTCGAATCCCAGTCCTGTCGTGGATCCACCCAGAGAGCCAGGCCACCGTGACGCGCTGCAGCCAGCCCATGGTGGGGGTGAATGGGAAACGCAGCAAAGACGACGAGAAATACCTGCAGGCCATCATGGACGCCAACGCTCAGTCCCACAAGCTCTTCATCTTTGATGCCCGGCACAGTGTCAATGCGGTCGCAAACAAGACGAAAGGCGGGGGCTTCGAGAGTGAGGACGCCTATCAGAACGCAGAGCTCGTGTTTCTGGACATCCACAACATCCACGTGATGAGGGAGTCCCTGCGCAAGCTCAAGGAGGTGGTGCACCCCAACATCGAGGAGACCCACTGGCTCTCCAACCTGGAGTCCACACACTGGCTGGAGCACATCAAGCTGATCCTGGCCGGGGCGCTGCGCATTGCCGACAAGGTGGAGTCGGGGAAGACCTCGGTGGTGGTGCACTGCAGCGATGGCTGGGACCGCACCGCTCAGCTCACCTCCCTCTCCATGCTGATGCTGGACAGCTACTACCGCACCGTCCGCGGCTTCCAGGTGCTCGTGGAGAAGGAGTGGCTGAGTTTCGGACACCGCTTCCAGCTGAGAATCGGACATGGGGACAAGAACCACACGGACGCTGACCGCTCCCCCGTGTTCCTGCAGTTCATCGACTGTGTGTGGCAGATGACAAGACAGTTTCCCGCAGCGTTCGAGTTCAACGAATACTTCCTCATCACAATCCTAGACCACTTGTACAGCTGCCTCTTCGGCACCTTCCTGTGTAACAGCGAGCAGCAGCGAGTGAAGGAGGAGGTGCAGAAAAAGTCCATCTCACTGTGGTCCTACATCAACAGTCAGCTGGAGGAATTCACCAACCCCCTCTATGTGAACTACACCAACCATGTTCTGTTCCCCGTGGTCAGCATGCGCCACCTGGAGCTCTGGGTGGGCTACTACATCCGCTGGAACCCCCGAATGAGGCCACAGGAGCCCGTGCACCAGCGCTACAAGGAACTGCTGGCCAAAAGGGCAGAGCTGCAGAAGAAGGTGGAGGAGCTGCAGCGTGAGGTGACCAATCGCTCGGCCTCCTCCTCATCTGAGAGGGCGGGCTCCCCCACGCGCTCCATAACGCCTGTCCAGACCTTTGTCTGAGGAGCACAGATCCACTCGCTGCACCTGCCACCCGGTGCGCTGCTTCCAAACAGATCCTATTTATGACCAGTATACGTATACATTGCACTGTAGTTAATTTCTGCAGGGATCGCTCTGGAAAGAAGCCTTGCAGTGACATATTGGGAGACACGAGAAGACGAGCTTCGGCGCTGAGCTTCACTCCTGCTCTCACCAGCTGCAGCTCCCCTATGCTAGGACTCCAACCCTTACCTCCGGAAGCGGAACGGGAATGTCATTATCAGCGGCCGTGGGGTGGCCTCACTCACTAGCCATATTCTAGTGCCCTCTGTGGGAGGGAAGCTTGCATCCAGACTCTGCCACCGATTATTCACAatttacagttattaattttattttgtgtaacaaGCTTATTATcccttaaaatgtattcatttctttAGTCTGGGGTTTTACAGAAGCTATGTGATAAAATGCATTCAGTCAACCAGTTATTGGAACTGAAATAGAGGTAGTTAAAGCAAGTATAGAACTGCCATGGTTTAAGGTAAATTGTGCTTTCTAAACTTAATCAATACAGAGAAGTGTCTTTGCTTCCTCACATGCACAGAGCAGTTGATAGGCAGCCAAACAGCCAAACACATGATAGGTGACCAAATGTTGTTGCTAAACACTCTGCCATTTTATTCCTCTTATTGTACAAATAGTATATGTTCCCTATGGTTTAGCACTCCCAAGTATCCCTCTGGAGATGTGTGTTGGGAGTGCTTCATCATTGGATAATGGTAGCTAGCTGGACTTGCCTACTTCAAGTAGTCTAATGGGTTGCTTTGAAGACCTCACTAATAGAATGTAGTATGAAGAATCCTTGAAACCTTGAGACTATTAATATAGGTATATAGAGCATGAAGAGATGAACCTTGGCTTCTATAATCATTATtaagtgtaaatgtatataGGTTTGCTAACTTATATTTGATAGTCTGCTGGGTGACACAGCACcagttgtctttatttttcagatccCAGTGCTCTGGTGAACGCTCTGCAATCCCACTGTGCCCAACAATGCTCAACTCCCAGACAGCTTCATTTTACTTCCTGTGTCCATCTTAAGTACATTTCTGGTGCTACAATGTTGCGTTCAACACCCTTCCACAGGAGAAGCATGCTATCAAGTGCTACATGTTCTGTTCATTGGGAGGCACACTGTAGTGTTTTACCCTTCTAACCTCtgtaaagcaaaatatattttcacatttactcTGCTTTATCCCATTGAAAGCtctatatttataaacactatatctcaaatgttgtaaaattccATCAGAAATACTTTGTTCAAAATAACCAATCGTGCAGTTAGCCTACTTTGCACTTACTTTATTGCACTAACCGTTCTACCACTAAACGAAGAAATGTATCATTTATGGTAAGACAGTGATGCTAAAAAACGCTGGTCGCATTTACAGTGTGAACCAGCTTCGTTTACTTGGgtttgaaaattatttatttaatgaaggtGGGATGATGTATGTGTAAAACCATTGTTATAACAACTAGCTtgtaagtaaatatttattttcatcttttgcatttgtttgtataaTCATTTAACCATGTTTTTGGTTTGAATTCAATTCTCCCCCTAAGTGGGGAAATCATTGCCACTGCTGTTTTCATTGTAACTTGAACTGACTGAACAATGTTCCCATAATGAAGTGGATTATCTGGCACTGTAACTAGTTGCTGGATAGTTTCACTGGATGACTcgtgttttaattgcattccGTTCGTAACATCACTAATCCCAGtactgttcattatttttttatttgttttgcattccaTACACAAATAAAGCCATTTCAGAGCTTTTTAATTGTGAGTTCATTTCCTGATTTATAATGGTAACTATGccagctgtatatatacaaagaGTTGAAtgtagtctctctctctgtctcatctatacatctatatacactcacctaaaggattattaggaacacctgttcaat

Function

symbol description
mtmr2 Predicted to enable phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity; phosphatidylinositol-3-phosphatase activity; and protein tyrosine phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to act upstream of or within dephosphorylation and lipid metabolic process. Predicted to be located in cytosol. Predicted to be active in cytoplasm and membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4B1. Orthologous to human MTMR2 (myotubularin related protein 2).

NR:

description
PREDICTED: myotubularin-related protein 2

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18081 MTMR1_2; myotubularin-related protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016425 True 4106 mRNA 0.47 16 19446554 19455857

Neighbor

gene id symbol gene type direction distance location
AMCG00016423 fa76b,fam76b,LOC106603374 coding downstream 8814 19427455 ~ 19437740 (-)
AMCG00016424 sesn3 coding downstream 39615 19378000 ~ 19406939 (-)
AMCG00016418 cwc15,LOC100196400 coding downstream 70958 19366084 ~ 19375596 (-)
AMCG00016420 mre11a coding downstream 129877 19281702 ~ 19316677 (-)
AMCG00016419 NA coding downstream 166886 19277298 ~ 19279668 (-)
AMCG00016426 pde2a coding upstream 4436 19460293 ~ 19498100 (-)
AMCG00016428 NA coding upstream 203559 19659416 ~ 19698145 (-)
AMCG00016427 stard10,LOC108278271,LOC106581404 coding upstream 281437 19737294 ~ 19757848 (-)
AMCG00016435 inppl1 coding upstream 361264 19817121 ~ 19857504 (-)
AMCG00016436 NA coding upstream 405597 19861454 ~ 19865695 (-)
G13414 NA non-coding downstream 187997 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 189635 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 193140 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 357922 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 368731 19077368 ~ 19077823 (-)
G13615 NA non-coding upstream 547292 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 859885 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 1012389 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 1031024 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 1139472 20595329 ~ 20598765 (-)
G13367 NA other downstream 341173 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 1905212 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2179807 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 2576552 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 2585375 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 673051 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 1160652 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 1210285 20666142 ~ 20683024 (-)
G13962 NA other upstream 3999235 23455092 ~ 23455811 (-)
G13969 NA other upstream 4243292 23699149 ~ 23700255 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031022 mtmr2 coding NC_007116.7 CM002889.2 23608026 ~ 23619911 (-)