AMCG00016426 (pde2a)


Basic Information

Item Value
gene id AMCG00016426
gene name pde2a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19460293 ~ 19498100 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016426
ATGTGCATAGATGCGGTTATTAAACAGAAGAGGGTTGAGTGGAGTGGTTTGCCTCCATCCGAGCTACAGGAAAAACAGCTCAAGAGCTTGGCGGCCCCTCTTCCACCTGATAAAAGAGTGATAATAATTCCCATTGTGGACCAGGATCTTGGGGCAGTTCTAGCTGTTGTCTTGGTTTGCTGCAAGCAGATAAGCGAACTGGATGAACATCACCTAAGTATTCTTGAAAAACATGTTACCGTGGCGTGTAAAAGAGTTCAGTCGTTGGAGAAGACATCACGGTGGCCACAAGTCCACCTGTCTCACAGCACGTCCCCCAACTCCATCACCAAGTCAGATTCCACGCACAACGGGACGTACAATGAACTGGACCACAAGATCTTACAGCTTTGCGgtGAACTGTACGACCTTGATGCAGCCTCTCTCCAGCTGAAAGTGATTAATTATCTGCAAAAGGAGACCCAGTCGCTGTGTTGCTGTTTGCTGCTGGTGTCAGAAGACAATAATCAGCTCTTCTGCCAGGTGGTAGGAGACAAGGTTCTGGAAGAAGAAATCAGTTTTGCTATGACATTTGGTCACCTTGGGCAGGTGGTTGAAAAGAAGAAATCCATCACTCTCCAGGATATCAGTCCAgAGGAACATCAACAGCTAAACAACATGCTGGGATTTGAAGCTTACTCCATGCTGTGTGTACCTGTTATCAGCCAAGCGACATCCCATGTGGTGGCCTTAGCGTGTGCGTTCAACAAGAGAGGGGGCCAAAAGTACACAGAAGCAGACGAGCACAAAATCCAGCACTGTTTCTGTTACACATCAACAGTATTAACCAGCACGCTCGCATTTCAGAAGGAACAAAAGCTGAAGTTTGAATGTCAGgCATTGCTGCAAGTTGCCAAAAACCTCTTCACCCACTTagatgatGTTTCAGTTCTGCTGCAGGAGATTATTATAGAGGCGAGAAACCTCAGCAATGCAGAGATTTGCTCTGTATTTCTACTGGACAGAGTGAGCCACGAGCTGGTTGCCAAAGTGTTTGATGGTGGAGTCGTTAACGATGAGaaagaatTCCGGATCCCTGCTGATCAGGGCATTGCTGGTCATGTAGCCACCACAGGGAAGATCTTGAACATCAAAGACGCCTACTCTCACCCCTTGTTTTACCGAGGAGTAGATGACAGCACTGGCTTCCGAACTAGGAATATACTTTGTTTCCCCATAAAGGATGAGAATAACGAGGTTATTGGGGTGGCTGAACTGGTCAATAAGCTCAACGGACCCTGGTTCAACAGGTTTGATGAAGACTTGGCCACAGCATTTTCAATCTACTGTGGTATCAGTATCGCTCATTCTCTGCTCTACAAGAAGGTCCATGAGGCCCAGTTTAGGAGTCACCTTGCTAATGAAATGATGATGTACCACATGAAGGTATCGGAGGAAGAAGTGACCAAACTGCTGACGAATGGAATCCAACCAGTGGATGAAATCCATCCCAGCTTTGCAGAGTTCACTTACACTCCCAGGTCTTTGCCGGATGACAGCACTCCTATGGGTATTCTCAGCATGTTTGAAGACATGGGCTTTATCAACACTTACAAGATTGACTTACAAACCCTGGCAAGGTTCTGCCTGATGGTGAAAAAGGGATATAGGGACCCTCCCTATCACAACTGGATGCATGcgttctctgtctctcacttctGCTATCTCCTCTGCAAGAACCTGGAGCTCTCCAAGTACCTCGAAGACATTGAGATATTCGCCCTCTTCGTCTCCTGCATGTGTCATGACCTGGACCACAGAGGAACCAACAACTCCTTCCAGGTGGACTCGcaaTCTGTACTGGCAGCCCTTTACAGCTCTGAAGGTTCAGTGATGGAGAGACATCATTTTGCCCAGGCGATAGCGATTCTCAACACCCATGGCTGTAACATCTTTGATCAGTTTTCCAGAAAGGATTACCAAAGAATGCTGGATTTGATGAGGGATATCATTCTGGCAACAGACTTAGCACATCATCTGCGTATCTTCAAAGACCTTCAGAGAATGGCAGATGtgGGTTACAACCCAAAGAACTGGCATCACCGCAGCTTGCTTCTTTGCCTCCTCATGACCTCATGTGATCTCTCGGACCAGACGAAGGGATGGAAAACCACTAGGAAGATTGCGGAGAAAGCCATGGGCAACAGACCCAGTGAAATGATGGACAGGGAGAAAGCATACATTCCCGAGCTGCAGATCAGCTTCATGGAGCATATTGCCATGCCTATTTACAAGCTGCTCCAAGAACTTTTCCCCAAATCTAGAGAGCTGTATGAGAGAGTCGCAGCCAATCGGAACCAATGGACCAAGGTTTCCCATAAATTCACCATCCGCGGTTTGCCTAGCAACAACTCTCTTGACTTCCTGGATGAGGAGTACGAGCAGTTCCAGGAGCAGGCAGGCGAAAGTCTGAGGATGAACGGTTGCTTGGAAACCACAGGATCAATGGAAGCCATCGAAGAAGGTGGCGATTCAGAAACGATCCGGAATTAGTTACAGACTGTGAGAGACAACATCTtttctaataaaacaaataaaaataaaaaataaaaatcagtaaCACCTTATGTTTGAAGGGAATTACCTTAAAGACTTTGGAAAGGTTTGAATGATTGCCTGGGACATGACAACCCATGCTGAGCCTAGGAGAACAGCAAAGGaaagaatattgttttatttctgaacaGCTTGTGGTGTCTTTCAATATAGTTCATCAACTGTGGAAaagattgtttttctaatatatttgtttatacagtGTTATCAACTGTAAATTCTGCTAGTATTAAAACGCGTACTGTTACCCTTTATGGTAATAACCTGTCGTCTCAGTAATGAATGGTAATTCCAACAGTgtaaatataaagtgttactttGTTCAGCTTTGAAAAGCCAAAACAATAGTGGTTGCaggtttcatgtttttcttttttttcatattggAAACAGTGTTTGCAAGCAGATGTTTGagtcctttattttttaaatatgtgtttagtGCTGGTGATGGAAGACTCTCAAATTCACCCTGTTTAAACACATAGGTCTCTGATGTCATAAAAAAGCAAATTGTAGAGATGTAGTTTTATGAGATTGATCAAGAGGGTCTTTAAGAAATGTAGATACAAATCTTTCACACattcaacaaaaaacattgcgTCCAGAAAACAGGTCAATCTGTCCACATTGCTAAGTGCTTTTCTCCCCAAAGATTTgccttttagaaaatatttaaagatctaTGCAGATCTGATTGGGATCTTAATTTCAGCAAAAacctatattttaaaattcttatTGTTGAAGCCTTCTTTTACAGTGAAACCAAGGACAATTACAGACAATCAAAGTCAGTGCTGCGTTCTGCTTGTTCCTTCATCTTAAATTACTGTTTTGCTACATGGTTATTCCTATGTTTATATGACTCACTGTATTTATATCCTGGgaatctgtattattttctaaagtTTCCAAGCTGAGCATAGAGGAGAAAAGCTGACACTGATATGGGTGTGGGACTTATTACTTACAGTGACATCTGacttcaatgcattttaataaaccatATGCACAGCTTCCGGTAGCACAAATAGCTAGTTTGTCTTTGGTGTCACATGTACAAAATACTGCTTATGGTTGTGTCTCTCATACTCACACATAGTGCTGTTCCatgtgttaattgcataaaATACTAAACACACAGTAATGTCCAAGACCGAGTTTCCGCCTTCATGATTTGAGTTTGCCTACCATAGACAGGTGGTATGGAAAGACATTTCATTGtgataatcaaattaaaaccatatagGCTGAATTTGGGAAGAGAAGGAATCCTTCTGTTCTTCCATTGcagacaaaaagcaaaaaaaaaaaaaaaaaaaaactttttaaa

Function

symbol description
pde2a Enables several functions, including 3',5'-cyclic-nucleotide phosphodiesterase activity; cyclic nucleotide binding activity; and metal ion binding activity. Involved in several processes, including cellular response to organic cyclic compound; cyclic-nucleotide-mediated signaling; and regulation of vascular permeability. Located in several cellular components, including cytosol; mitochondrial membrane; and perinuclear region of cytoplasm. Colocalizes with plasma membrane.

NR:

description
PREDICTED: cGMP-dependent 3',5'-cyclic phosphodiesterase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K18283 PDE2A; cGMP-dependent 3',5'-cyclic phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016426 True 3931 mRNA 0.43 27 19460293 19498100

Neighbor

gene id symbol gene type direction distance location
AMCG00016425 mtmr2 coding downstream 4436 19446554 ~ 19455857 (-)
AMCG00016423 fa76b,fam76b,LOC106603374 coding downstream 22553 19427455 ~ 19437740 (-)
AMCG00016424 sesn3 coding downstream 53354 19378000 ~ 19406939 (-)
AMCG00016418 cwc15,LOC100196400 coding downstream 84697 19366084 ~ 19375596 (-)
AMCG00016420 mre11a coding downstream 143616 19281702 ~ 19316677 (-)
AMCG00016428 NA coding upstream 161316 19659416 ~ 19698145 (-)
AMCG00016427 stard10,LOC108278271,LOC106581404 coding upstream 239194 19737294 ~ 19757848 (-)
AMCG00016435 inppl1 coding upstream 319021 19817121 ~ 19857504 (-)
AMCG00016436 NA coding upstream 363354 19861454 ~ 19865695 (-)
AMCG00016434 NA coding upstream 371593 19869693 ~ 19871302 (-)
G13414 NA non-coding downstream 201736 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 203374 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 206879 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 371661 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 382470 19077368 ~ 19077823 (-)
G13615 NA non-coding upstream 505049 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 817642 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 970146 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 988781 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 1097229 20595329 ~ 20598765 (-)
G13367 NA other downstream 354912 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 1918951 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2193546 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 2590291 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 2599114 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 630808 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 1118409 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 1168042 20666142 ~ 20683024 (-)
G13962 NA other upstream 3956992 23455092 ~ 23455811 (-)
G13969 NA other upstream 4201049 23699149 ~ 23700255 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000217_00053153_00055573 PDE2A coding CI01000217 null 53153 ~ 55573 (-)