AMCG00016427 (stard10,LOC108278271,LOC106581404)


Basic Information

Item Value
gene id AMCG00016427
gene name stard10,LOC108278271,LOC106581404
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19737294 ~ 19757848 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016427
ATGGCTAAGGACGCTGTTCTCATCCCGGACGACCGAGCTTTCAGcaattttaaaagtgaatgtAACTCGGAGGAAGGATGGACACTGACCTACAACAAATCTGGGATTACTGTGTGGATCCACATTTTAGAAGAGGAGAAATCCTTGCATAAGATAAagTGTCGGATGGTGTGCAAGGATGTCTCGGCAGAAACCATGTACGACGTTCTCCACGACATCGAGTATCGGAAGAAATGGGACGCCAACGTCATAGAAACCTTTGACATCGGCAAGCTCACGGTGAATGCGGACGTGGGATATTATGCCTGGAAGTGCCCCAAGCCTCTGAAGAACCGAGACGTCATCACACTGCGCTCCTGGTTGCCTATGGGGAATGACTACATCATCATGAATTATTCTGTTAAGCACGCTAAATACCCACCAAAGAAGGACATGGTCCGTGCTGTATCTATTCAGACCGGCTACCTGATCCAGAGCCATGGGCCCAAGAGCTGCACTCTCACATACCTGGCACAGGTGGACCCAAAAGgtTCTTTACCAAAATGGGTAGTCAACAAGTCTTCCCAGTTCCTTGCTCCTAAAgCAATGAAGAAAATCAACAAGGCATGCCTGAAATACCTCGAGTGGAAGCAGAAACACAACCCCCATTACAAGCCTTGGCTGTACCCAGAGCAGAGCCGGCTGTCCAGCATCCCCCTGTCTGAGCTGAGCATCCAGCACGCCGACTCCCTGGAGAACATCGACGAGAGCGGCCTGAGCGAGGCCAAGGAGGAGCACTGTGAAGGCAGTGACGACGAACGAGCCAACTGA

Function

symbol description
stard10 Predicted to enable lipid binding activity. Orthologous to human STARD10 (StAR related lipid transfer domain containing 10).

NR:

description
PREDICTED: PCTP-like protein

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG:

id description
K24142 STARD10; StAR-related lipid transfer protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016427 True 810 mRNA 0.51 6 19737294 19757848

Neighbor

gene id symbol gene type direction distance location
AMCG00016428 NA coding downstream 39149 19659416 ~ 19698145 (-)
AMCG00016426 pde2a coding downstream 239194 19460293 ~ 19498100 (-)
AMCG00016425 mtmr2 coding downstream 281437 19446554 ~ 19455857 (-)
AMCG00016423 fa76b,fam76b,LOC106603374 coding downstream 299554 19427455 ~ 19437740 (-)
AMCG00016424 sesn3 coding downstream 330355 19378000 ~ 19406939 (-)
AMCG00016435 inppl1 coding upstream 59273 19817121 ~ 19857504 (-)
AMCG00016436 NA coding upstream 103606 19861454 ~ 19865695 (-)
AMCG00016434 NA coding upstream 111845 19869693 ~ 19871302 (-)
AMCG00016433 NA coding upstream 114769 19872617 ~ 19874894 (-)
AMCG00016437 NA coding upstream 122423 19880271 ~ 19881825 (-)
G13414 NA non-coding downstream 478737 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 480375 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 483880 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 648662 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 659471 19077368 ~ 19077823 (-)
G13615 NA non-coding upstream 245301 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 557894 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 710398 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 729033 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 837481 20595329 ~ 20598765 (-)
G13367 NA other downstream 631913 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2195952 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2470547 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 2867292 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 2876115 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 371060 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 858661 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 908294 20666142 ~ 20683024 (-)
G13962 NA other upstream 3697244 23455092 ~ 23455811 (-)
G13969 NA other upstream 3941301 23699149 ~ 23700255 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008849 stard10 coding NC_007126.7 CM002899.2 47746176 ~ 47774711 (+)