AMCG00016428


Basic Information

Item Value
gene id AMCG00016428
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19659416 ~ 19698145 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016428
CAATCACCAGTTGAAGACCCTCCTGAGGTTGAAAAGGCACCAGACGTTCCTCCCAGGACCAAACTTGTGCCTCAGCCTCAGCCCCCTACCCTGCCTCTTCTGCCACAGAGGAAAGCCCCACATGTACCTGTTATCAGAACTATTTCCATAGACTGTGCAGAGGACTATGAAGTTCCAGATACAACACAGAACCACTTGTTTGACCACTTAGACATGGCAGACAAGGACGACTTCAGTAGCCTCTACAGTGACGATGAGATccttgatgatgatgatgatgacagcTATGAAACCATCCCGAACAATGGAGGATCCTGGCAGGATTATGGGCTTAGCACCCTCAAGGATAGCGTTTACCTTCCTGCAATCGGGAAAAGACAGTCTGCCTTGGGAAAAGAAGGCAACTCTGCACCTCAGCTGACTCCAGTCATCAAGATGGGCTGGCTGGACAAAAACCCGCCCCAGGGGTCGTTAATCTACCAGAAGCGCTGGGTGAAGCTTGATGCAGATTTCTTGAGATACTTTGATAATGATAAGGATATGTATTCAAAGCGAATCATACCGACGACTTCCATTACTAACATCACCAATGTAGGAGACCAGAAATTCGAAGTGGTCACCCACAACAGGACTTTCGTCTTCAGGGCGGACAGTGACTttgagcGCACCGAATGGGTGACTGTGCTACAGGAGACCATAAGGGACCAGAAGTACACCCACAAGGATCTCTCCGGTCAGCACCTGCACGGCGCCGCTGAGATGCAGGGGTACCTGGAGCTCAGGGGCCTGCGCTCCAAGCTGTATGTGGTCGTCTCCGGGGATAAAGTCCTCCTCTACAAGAACATGGAGGATTACAAGCTGGGCATTGGGATCACGTCCATAGACATGAATGTGGGCAATGTGAAGGATGCTGACCGGCGAGCCTTCGATCTCACCACTCCCTACAGGACATTCAGCTTCGTGGCAGAGTCAGACCAGCAGAAGGATGAATGGGTAGAGGCCATGCAGAATTCGATTGGGGAAGCTCTCTCCAACTACGAAGTGGCTGAGAAGATCTGGGTAGACGAATTCAACCAGTTCTGTGCAGATTGCGGGGCTGCCAAACCCGAATGGGCCGCCATCAATCTGTGCGTGGTTTTCTGCAAGCGCTGTGCAGgTGAACACAGAGGTCTTGGACCAAGCATATCAAAAGTGCGGAGTCTGAAGATGGACAAGAAAGTCTGGACAGATGAGCTAATTCAGttgttcCAAGTGCTTGGTAACCGGGGGTCCAATACATTCTGGGCTGCTAATGTGCCCCCGAGTGAGGCCCTGTCCCCGGCGAGCTGCAGTAGTGACAGGCGCAGGTTCATCGCTGCCAAATACAGAGAGGGGAAGTATCGCCGATACCACCAGCTCTTCGGAAACCAAGAGGCTCTGGACAACGCTCTGTGCATCAACATCCAATCGAATGACGTTCTGGAGACTCTGTCCCTGGTATTCTGTGGAGCCAATGTGAACTGTGACACGGGAAACCCCGACTTCCCCACTCCCATCTCCCTGGCTCAGAGCTACGAGCAACACCTACAGGTGGAGTTCCTGACCCAGAACAAGAACACGGAGATTCCTAGGTCAGAGGTGGGAGGTCACATGGACACAGTGCACTATATGGCCCCGCCCTCCATCACACACAATGGATTTTTGTACAAGACCGCTTCGATGGGAAAGCCGATCACCGAGCGCAGAGCTAAAGAAGAGTTTAGTCGGCGCTGGTGCACTTTGAATGATGGGAATTTCAATTACTATGAGAGTGACCGGAACTCGACACCCAATGGGGGTCTCAAGATGAAGGAGATCGTCTGTCTTGTTGTCAATCCCTTAGAAACACATGGTTACGACCACACGTTTGAAATCTATACAGACTCTGAGAGGCTTTATCTCTTCGGGACCGATAGTCCTGATGTCATGCGGGAATGGGTGAAGTCTATTGCCAAGTCTTTTATCCCATCCAGTGCGGAGGACTTGCTCAACCGGGACTTTGAGAGAATTGGGAAGCTACAGTACAAAGATGGGCTCAACCTCCAGAGCCCGAAGGTGGGCTGGTTCTCTCTGGTTGGCTCCACGCTGTACGCCTGTTTCGAGGACAGTGAAGGGGAAGAAGCCATTCACCTGAAGAAACTGCAGGAGCTCTCCATCCAGCAGGAGAATGAGGTGCTCGTGCTGGTGGAGAGGAGAAGGACTCTCTACATCCAGGGGAATCGGAAGCTGGATTATCTGACCTGGTCGACAGCCATACAGCGGGCAGCCGGGAGCTCTGGCGACACACTGAGCCAGCAGCAGCTCACAGAGTCGGACATCCCGGTGATAGTGGACCGGTGTATTGACTACATCACGCAGTGCGGCCTGACATCAGAGGGGATCTACCGGAAGAGCGGGGTGAACTCCAAGATCGCCACACTGCTGGAGTCTTTCCGCCGGGATGCCCGCAGTGTGCGGCTGAAGGAAGGAGAGCACCAGGTGGATGACGTGTCCAACGTCCTCAAGAGGTTCTTCAGAGATGTCAAAGAGGGCATCTTCACCAGTGAGGCCTCCGCTGCCTGGCTCAGCACCTCGGCTATTGCAGATGAAAGCCAGAAGATCTTGAATTACCAGTCTTTGCTCAGCAGCCTGCCTCGAGTAAACAAGGCCACTGTGAGAGCCCTTGTCAACCACCTCTATTGTGTCCAGCGATTTGCAGATATGAATCAGATGAATCTCCATAACCTGGCCATCGTGTTTGGGCCCACACTCTTCCAGACCGACGGCAAGGACTACAATGCTGGCAGAGTCATTGAGGAGCTTATTGGCCACTATGTGGCCATTTTTAATGTTAATGAACAGCAGCTGAAGAAACAGTTGGATGAAATTACAGCCATCATTAAGCTACGGGAAATTAACTCCAGCAGCAAGGTTCCACCTGCTGGAGATTTCATTTGCACAGTTTacctggaggagaagaaggagacagCAGAGCAACATGTAAAGATCCCAGCGACCATGACCGCGGCTGAACTTGCCTTGGAGATCCTCGACCGGCGAAAAATCTCTGTGCGGGAGAAGGATTACTGGTGCTGTTTTGAGGTGAACGAGAAGGAAGAGACAGAGCGGCCTCTGCACTATCAAGAGAAGGTCCTGCCCATCCTTCACTCCATGGGCACAGAGAGCTGCCTGGTGGTGAAGAAGCACTACTCCATGGAAGCCATGCTCATCTATCTGGCCAGTAAAGTGGATGACTCGAAGCACGGCATGATGAAGTTCCGTGAGGAGAGGAACCTGCTGGGTTTGGGGCTGAACACGGGCAGCTTCCACGACCGCTACTTCATCCTCACCAGCACCTCTCTGAGACTCTACAAGGAAGTGCGGAGTCACCGGCCTGAGAAAGAGTGGCCAGTCAGATCCCTGAAGGTCTACCAGGGGATCAAAAAGAAACTGCGACCGCCAACCTGcTGGGGGCTGACTGTTGTGTATGCAAATGAGAAACACGAGAAACAGCATTGGTATCTGTGCTGTGATACACAGACTGAGATGAGGGAGTGGTTTGCAACCTTTCTAAGTATACAGAATGATGGCAATGTGTGGCCTTCCGAGACTATCAAGATGCGGGCGTCTCGGGTGCCTCTTGATACCAGGTTGGGTAACATCTCTTTGATCCCACTGAGGGGCAGTGAAAACGAGATGAGAAACAGCGTGGCTGCTTTCGCTGCTGACCCGCTTGCTctCTTCCGAGATTTATGAAAATTTAGCTTGACATTCAGGAAACGACGGAGCAAGCAGAAGAACGTCTTTTTCAGAGTGAGGCCCGGCTGCAGTAACATTAAAGTGAAGCTAGAACAGTTTTTGGTGTAAACTTTTCAGCATTGTCTGATAGTAAGGATTGTAGAAACAGACTTCAGCAAGTCTTACTCCCCAGCTCAGCTGAACGGTGGGGACTGGACCGATCCATTCCTGCACCGAGCTCTTCACACTCAAGACCGATCTCTGTGATGCCCTTTTTCATATGCGCTCAAGTAGATTCCTACTGAGCAGGGGCTGTGAAACTTACACGCCGGCCCTTATCACCACGTAGCAGCAGTCTTTAGGAGTGTCTTGGGGCTTATAATCCAAGGCCATTCTCGGTGTTTTGAAAGCTGTTGTGAAaacagtctttttttgtttttgtatagtgCCTTTCAAAACAGTTCCTGGATCCTGGAATTCTGGGTAATCTGAAATCACTTTCCTCCACCATTTTCCTGTCAAattttaacataacattttattaacctttaaaatgaataaatagatcCTTCAGATATGACAATCTGTGCAAAGACTTTGCCAGGACCATCATGGGAGAATGAAGACCTGAGATTGGATAAATGCAGCTTTTCTTCGAGAGGATACAACACCTGTTGCTGTTGCTCTTTGATCATAAACACAGCGAACTGTGAAAACCACTTGCTTATCATTTCAACAAAGTTTGTTGCTTAACTTATTGTTGTGCAGATGCCTTTTAATCGTTTAAGACCATGTTGTGAAGTAGGTGGCATGCCTCACAATTGCTTCagttatttcacatttcacatagTTGTCATCTTCTTTTAGAAATGCACTGTGCTGAGCTGgtttggtattttttttgtttagttctaaagaaagaaatatcaattgaaatgcattattttatttaaaataaatacttttgatttaCTCTGTAGAAGAGTGAACAGCTTACtgcaacaatgacaacaattaAGTGTCAGAAGCACAACATGCCAATTCAACAAAAGGTCGCTTTCCTAGCTCAAATTTCTTTACTAAATATTGTCTCGTACAGATTCGACAAATAGCTTCCCTTTATAGCTTGCAGTGGAATGTTTTAAAGGCATATTATAGTTCTTATTTCTTGTACTGTGGGATATTAGTCACATATGCTCTATACACTTGTGGTTGTGAATGACTGGGGCACATTAACAAGAGAAattcccatttttattaaaaattgtaTCACAAGAATTAAGTCTctccagacaaaacaaaacaaaaaccataatAGCTTTCCCACAGTATATTGCCCATTACTAAACCACCACTGCTGTTCGGGTGATTTAACCACAAAGGTTTCATCTAATTAtgacagtttgttttcttgagtGCAGTAACACTATCAGTATACTGAGGCCATCTCAGCCCAGAcgcattttctacattttaattggaataAATGCTACACACTGTGCTAAAACAACatctttcatattttgaaatgtatgatttCTTGGCAATAGTTGTGTTGTTGTATGTCTCTGTCAATCAGGAATTCTGGGAGATTCCCTTTACCACAGGTGTTGATTTTAGCagaatgcttttctttctaCATGGGGTACGGTAGATGTTGGTGATGGCATCACATTGCGACTTCTCGACCAGctcttgtttaatttcataacCTTCTGAGAACATTATCTTGTGTACCTCCAAACATTACAGGTCTAAAGGTAAATACATCTATGGTATAATTTTACCAGATTGCTTATGGTTAAGTTAATGGCTACAAAGATGAAAATAATGATACTGACTTATGGGTTAACCCAGCCTCTCAGTAAGGAATGGCTTGGCAACAATGTCATCTGAGTGCTGCTTTTATTTGATGTAAAGGTCACTCCCATAAAGGATTATTCAGAAGGGGCCATCAAGCTGATCTGTAATTCTCCCTTTGAAGAAGACTGATGCATATTTTTAACTTTTCGGAGAAATGCTATTACAATTCCTCCCATGTGGGGTTTTGTCtggattgtatttttaacttcCCTGTCAATTGAAAGCAACAATTCACAAACACTATAGAGACCCCATCACTGTGCCTGGAATAAGAAGATCTGAGGACTCCTATCCTATCTTAACATGGAAGAGCAAAACTCCTAGCAACACTAAAGCCATTGCAAGGGCTGGGAACTTGTCTCTCAGTTCTCAGTCTCAATCCCCCAGCTGCAGCTTGTCTTGTGAAAGCTCAGAGATTGCCTTCAGCAGCTGGCTAAACTGTCAGTCTGAGTTTGCTCTTATTACCTTCCCGTTTACTCTTCATTTTCATCTCCTGAGAGACGGGTGACGTCTGGGTCAAGTGTTTCGGAAAAATGCATCCTCACAGGCCCCTTCAAATGGCTCGTATGGCTCAAACGGTAGAGAACTCGGAGTGAACTGAGTCAGGATGCACTTCTCTGTTCAAGAACAAATACGGTTGTGTCTTAGTGTGCAGTATTGATTTAGAAAGCAGACCTGCTGTTGCATAATAGAGCCTTCATAACAATCCATGACTTTCTCAtcctctttttttattgtacattatatcgctgtttaaaatgtttgctattcttgttttttaatgtccGTGTAGTCCATTgtgattaatattttgtataaagaAATCGTTTCCCTCTTAATTTTAGTgtatgtcatgtttttattatacaaatatgtaaatatatatatatataaatactgtagcAATAACTGGAAAGCTACTGTAGCACATGGAGGACTCGGGTAGAAAGATGTCCGAATGGGTGGATCACCTGTCTCCTG

Function

GO: NA

KEGG:

id description
K18439 ARAP1; Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016428 True 6579 mRNA 0.46 32 19659416 19698145

Neighbor

gene id symbol gene type direction distance location
AMCG00016426 pde2a coding downstream 161316 19460293 ~ 19498100 (-)
AMCG00016425 mtmr2 coding downstream 203559 19446554 ~ 19455857 (-)
AMCG00016423 fa76b,fam76b,LOC106603374 coding downstream 221676 19427455 ~ 19437740 (-)
AMCG00016424 sesn3 coding downstream 252477 19378000 ~ 19406939 (-)
AMCG00016418 cwc15,LOC100196400 coding downstream 283820 19366084 ~ 19375596 (-)
AMCG00016427 stard10,LOC108278271,LOC106581404 coding upstream 39149 19737294 ~ 19757848 (-)
AMCG00016435 inppl1 coding upstream 118976 19817121 ~ 19857504 (-)
AMCG00016436 NA coding upstream 163309 19861454 ~ 19865695 (-)
AMCG00016434 NA coding upstream 171548 19869693 ~ 19871302 (-)
AMCG00016433 NA coding upstream 174472 19872617 ~ 19874894 (-)
G13414 NA non-coding downstream 400859 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 402497 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 406002 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 570784 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 581593 19077368 ~ 19077823 (-)
G13615 NA non-coding upstream 305004 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 617597 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 770101 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 788736 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 897184 20595329 ~ 20598765 (-)
G13367 NA other downstream 554035 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2118074 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2392669 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 2789414 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 2798237 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 430763 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 918364 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 967997 20666142 ~ 20683024 (-)
G13962 NA other upstream 3756947 23455092 ~ 23455811 (-)
G13969 NA other upstream 4001004 23699149 ~ 23700255 (-)

Expression


Co-expression Network