AMCG00016461 (eif2s3,if2g,LOC106590489,LOC107727229,LOC107686712)


Basic Information

Item Value
gene id AMCG00016461
gene name eif2s3,if2g,LOC106590489,LOC107727229,LOC107686712
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20342080 ~ 20355124 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016461
tctctctctctctctctctctctctctctctctcacacacacacacaccctcacacacaggCCCACAGCTACAGACAGAAGCCTACCACTTGTTCAACATGAAACAATTGGCGTTGTTTATGTTCATGGATTTTAAATCAAACTCCTGTAAGAAATGCAGCAGTTGCTTCTGCAGTATACAGGCCTTATggctttttctgttgttgttttatatattaatatatataaagccaCATGATTGACCCACACCAATCAATGGTCAAGACATTATTACTGACCACCGAAGACTGAGATTACACGTGAAATTTGCAACTGAAGAAAAAGTATGCATATAAATAATTGGGTATTTGTATGTAAGTAAAGGCTGTGAAAGCTGTGCCGGAAGCCAGTGGTACGTCTTTCAATGCTCGCTAtaacagacaggcagacagattgACAAAGGCACAGCCATCTCCTCCTGCTGATCAGGAAGCAGACGCAGCCAGAACGGTTTTAACATACAAGTGTAACGGCAATGCCAGCCAACAACAGAAAGAGGTGCAGAGAATTCTGATCTCCCTGCATTATCACCGCCATCTCCAGGAGAGACTACGGCTGCGTTCAATATTTCTTCGGTTCTAATGGGTCGTTTTCACTTAACAGCAGCTGAAACGGTTCTTAAAGAGACGGAAAGTGAGGTCGTTTCCTCAGAGGATTTCCCTTATGAATCAGCAGGATCCTGATAACACAACTGTCCGGCGGCGGAGGAGGAAGAGTAGCAGCAGTAGGCAGCCCATTGCAGGCAGGGTCTTGCAGCTCAAGTCACTGTGACCCTCCTGCACTGTGCCCCTTAGTCAATATTGATTTCCTCTGTGTTTTCACTGGGGTGGCCAAGGCTGGTGAGTTCACGCTGCTATCTGCTCAGTCACCTTCTATAAACTACATTTCACTACCATCCCTACTGCCTGTCCCACCACCTCACTGCACAGGCTGGTCTTTGCCCATCAAGACCTACAGAAGACTTCTACTTCTCCAACACGGACAAGATATAGTAAACTATTTAGAACAGCAGGAAGAAGCTTATTATGGCAAGGGCAGGAAAAGCTAATGCaccttttataaaaaaacacaagcagaccCCTAAGCTATTTTCATTGAGGTTGGGATAATGACTCCACTAGGCCGTTGCAGATGACTTACCTTGAGATATTTATAGGAAATAGATTTtgcccaaaaaaacaaaagaaggaatctgcacagacatttatttattttttattgttattgtttttggaaaattcatattttgaaagaatGAGAGTTGATCTGAGGATGAGGCATAAACTGAGATTACTCACCTTCCTCTGCCCCCCAAAAACTATTCATATCTCATAACAACCCATGGACAAATGGGGGGTTATTTTGTTTGACTATACCATAGCAATAACCACtgacctattttatttttgtattttgttttgagaaaacaaatattttgtttattcttttttttttaacaattttctttttcctatgaaaaaaataatcaaccaCTGGGTTTTTAAAACGCAAAAGGAGTCTCaggaacaagagagagaaagagtgagaaagagggagagtgaggCAGAGTGTGTGCTCCTCAGCTGCAGCGCCTCACATGCTCCAGTACGTACTCAGGGAAGTGGAGACTGCATACTTGCAAGCCATCCAACTTGCAAGGCATCCTGGGATATTCGTCCTCCTTCCACTTGTTCTCCTCAGGGTCGAAGGTCAGGATGGAGTCGCTGTAGTGGCCATTGTAGCACAGCCCTCCCAAGACCATGATCTGCTTGTCCAGGACGGCCACGCCGTGCCCGCTGCGGCCGATGGGCATGGAGGCCAGGATGGTCCACTCGTCCGTCTCGGGGTCGTACACCTCCGTGGACGGACAGCCCTGCGACTCGAAGGAGGCACGCAGGATGACGCACACGCCGCCGAAGACGTACAGTTTGCCGTTGTAGGATATCATCTTGTGGAAGCAGCGGGCGTAGTTCATCTTGGACTTGTTCTCCCAGCAGTTCGTGACCACCTGCGTCCTGCGCGTGCGGTGCTCCGTCAGGCCCTCCTTGCTGgggtcaaacacacacacctgcttggaggtggaggaggacgTGATGCCGCCTGTGATGTAAAGTTTGCCGTTGAGCACTGTGCCCTCGTGGCCGTACTTGTTAACGGGGTAAGGGTCCACAAACTCCCATTTGTCCTCCACGATGTCATAGCGCTCTGTGGAGTAGAAAGTCTCGTCCCTCGTCCGGCCTGCCACGGCATAGATGTACTTCCCGATCACTCCCACCGCAAACTCTGAGCGCGGCACCGACATGTCCGCCATGCGCAGCCATGAGTTCTGCCGCGGGTCGTAACGGAACACTTTGGAGGAGGCGTGGAACTCGCCGTCCGGGCCCAGCTCCTCCCCACCCAGCAGGAACACAAAGTTATTAACGATGGCCAGACAGTCAGGCCGCAACGGCACCTGGGGGCCTTCCAGCTCCCACCAGACCTTGGGCTTGTGCAGCAGCAGGATCTTGCTATTCACCATGCTGTGGCCAATCATGCCGCGGAATACGGCAGTCTGCGGCCGGATGGACCGGATGCGGTTTGACTTCATGTCCATCAGGGGCTGCTCGTTCACACCGTGGAAGTAGTTGAGCGCCTGGTCAACCTCATGCCGCAGTTGCCGGGAGTAGCGGTAGAACTCTGAGGTCTTCACCTGCATAGAAAACGTTGGAGGGCGTCATGAGGCAGAAGCGCACATTCTGTATGACGGAGTCGGTGTGGCGCCAGCGCCGGCGGTCGTGCCTCAGCCAGGCCTGAACTGCCTCGTAAAGCTCAATCTCGGGGAAGCGGCTCAGCTGGTCACTGTCCAAGTAGGCCATCAACTTCTCGAAGCTAAGGTAGGACAGGAAGTCCGGCCGGGACATGAGCGGCACGAAGTTCTCCAGCAGGAAGGAGTCCAGCTGCTCCTGCACGCCCTCAATGTTGACACTGAAGTCCTCCAGCAGCCTCATGACCTCGGCGCAGTTATCCAGGCAGATCTTGGCCAGCAGGAAGGAGCAGCAGAACTCCACCACCTCGGTCAGCTGCACGTACATGGCGGCCTGCAGGATCTCATGCACCGTGAGCATGCTGAGCTCCAGCGTGCCGTAGTACATGAACTGCAGCACGTGGCTGAAGCCGGTGGCCGTCAGCCCCTTCAGGTGGATCTTGTCCTGGTCGCGCTCGCGCATGTCGGCTGTGAACATGATGCGGAAGTAGTCGCTCTGTGTGGCCAGCAGGGCTTTGTGCGCCTGGAAGTGATGCTCCTCAATCAGCAGCGTGACGTCCAGCAGCAGCCGCTCCTCGTACAGTGCCCGGAACCCCGACGACACGCTGCTGTCGTGGTCCGACGAGATGTACACTTCCACATCCCCTGCCATTAATGACCTGGccgGTGCATCCAGGGCAAACGTGGGGTTTGCAGACTGTGTAATGTGGGGAAGTTCACATTTTCTCTGCTTGTGCTTTCCCTGCTCTCGGCGATGCGGCTCCACACAACCCCTCTTCGACCAGGGAGCTCGGGCACCTTCGGACATCGATTAACAGTGTATATCCGAATTAAGAGGACCGGGCTTTAAACACGCATGACCCTCGATGCCTTTATCTGCCTTTGCCGTTTTTTCCGGGAACATTATTAACAGTGGATAACCCAACACTGTTTACCTCCGTCTTTCAGAGCAACCACAGACGCCATATTCTCGACTGCACTGACGTCATTTCCTGCAATCCGCCAGAGCGGACGGAACCGTCCCCAGCTGCAGCGGGTCGGCTCTGCTCGGACTAGGGCCACGTTGTCTGccgtttctgttttctttttgtttaatcCTCACATCCCTTATTTCGGTTACAATGGCGTGTAACTAACAATAGgcctcataagaacagtgtaaacTAAAATGATTTATTGATACAATGTTTTCCCGTTTTTTGTACAGTTCTCTCCTATACTAATTGTACAGCCGGGATGGAATCACAAACATGTCCGTTTTCCCTTAATCAACTGTATGAGTTTATTACGGAAGCCTATATTTTAATGCCACCCAAAACTTTTGCAATTGAATGCAATAGTTGCAACATAGGCTACATTATATTAATAGGATTctgacacacattttaaaatcgaGCATTTTCATTTAAGATGGCGGGTGACGAGTCAGGAGTAACGCTGGGGCAGCCCCATCTTTCCAAACAAGATCTCAATACTCTGGATGTGTCCAAACTAACTCCCCTCTCTCAAGAAATCATCAGTAGGCAAGCCACAATTAACATTGgcACAATTGGTCATGTAGCTCACGGGAAATCCACAGTAGTGAAAGCGATTTCAGGTGTTCACACTGTCCGATTTAAGAATGAATTGGAGAGGAATATCACTATCAAGCTTGGCTATGCAAATGCAAAGGTGTACAAACTCGATGACCCCAGCTGCCCCCGGCCTGAATGTTACCGGTCGTGTGGCAGCAGCACTCCAGACGAGTTCTCCACAGACATCCCTGGGACCAAGGGCAACTTCAAACTCGTCAGACACGTGTCATTTGTGGACTGTCCCGGCCACGACATCCTCATGGCTACCATGCTGAACGGAGCTGCAGTGATGGACGCCGCCCTGCTGTTGATAGCCGGGAACGAGTCGTGCCCTCAGCCCCAGACCTCCGAGCATCTGGCTGCCATCGAGATCATGAAGCTGAAACACATCCTGATTCTGCAGAATAAGATTGACCTGGTGAAGGAGAGTCAGGCTAAGGAGCAGTACGAGCAGATCCTGGCATTCGTGCAGGGCACTGTGGCGGAGGGAGCTCCCATCATCCCCATCTCGGCGCAGCTGAAGTATAACATCGAGGTGGTGTGCGAGTACATCGTGAAAAAGATCCCCGTGCCTATCCGGGACTTCATATCCGAGCCACGCCTCATCGTGATCCGGTCGTTTGATGTGAACAAGCCTGGTTGTGAGGTGGACGACCTGAAGGGCGGAGTGGCTGGAGGCAGTATATTGAAAGGAGTGCTGAAGGTGGGTCAGGAGATCGAGGTGAGGCCAGGTATTGTGTCCAAAGACCACGAGGGGAAGCTCATGTGCAAGCCCATCTTCTCCAAAATTGTCTCGCTGTTTGCAGAGCACAATGACCTGCAGTACGCTGCTCCTGGGGGCCTCATCGgtgtgGGCACGAAGATCGATCCCACACTGTGCCGGGCGGACCGTATGGTGGGCCAGGTCCTGGGGGCTGTGGGCGCACTCCCCGAGATCTTTACCGAGCTGGAGATCTCCTACTTCCTCCTGCGCAGACTGCTGGGTGTGCGCACTGAGGGCGACAAGAAGGCAGCCAAGGTCCAAAAGCTGTCTAAGAATGAGGTTCTGATGGTGAACATCGGGTCCCTGTCGACGGGCGGCAGAGTAAGCGCGGTGAAGGCTGACCTTGCCAAGATTGTGCTGACCAACCCCGTGTGCACCGAGGTGGGGGAGAAGATCGCCTTGAGCCGGAGAGTGGAGAAGCATTGGCGTTTAATCGGCTGGGGTCAGATCAGGAGAGGCGTAACAATCAAGCCCACCGTAGACGATGACTGAGAGTCGGCCGGACCACCGTGTACCTGGCACCCCACCCGACGCCTGTCCAACACTGCAGAGCTGTGGTGAATACCCACCCGGGCTCTGGACTGGAATCCTAGggttctgcattttaaaaaggagtTGTGTATCTTCCATTACAAATTTGCCTAATTTATACATACAAGAGGTTAGTTTTGGGATCACGTGGAGGTTTGATAGTATCGCCAACAGCTGTCATTGAAAACCAATTAAAACGTTTTGAACAAATGCGTGCTCTGGTCCATTTCTGTTCCCATGTGCTGTAATTTCTAAACTAATTCTTGTTGTTCAGGCTTTTGTAATTTCATGCTGTCATACACCATTGCACTTCCTATAAATGACTCGTGAAATCGCACATGAAGATTGTCTGTTCTATTcaccaagaaaaataataaacgcCAGTACA

Function

symbol description
eif2s3 Predicted to enable translation initiation factor activity. Predicted to contribute to tRNA binding activity. Predicted to be involved in formation of translation preinitiation complex and positive regulation of translational fidelity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic translation initiation factor 2 complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in MEHMO syndrome. Orthologous to several human genes including EIF2S3 (eukaryotic translation initiation factor 2 subunit gamma).

NR:

description
PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03242 EIF2S3; translation initiation factor 2 subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016461 True 6038 mRNA 0.51 16 20342080 20355124

Neighbor

gene id symbol gene type direction distance location
AMCG00016459 NA coding downstream 3037 20334888 ~ 20339043 (-)
AMCG00016462 kpna1,LOC102776202 coding downstream 39006 20292302 ~ 20303074 (-)
AMCG00016463 spcs2,LOC107677086 coding downstream 52295 20285322 ~ 20289785 (-)
AMCG00016455 ddx10 coding downstream 59763 20255636 ~ 20282317 (-)
AMCG00016454 NA coding downstream 195779 20145813 ~ 20146301 (-)
AMCG00016464 NA coding upstream 2109 20357233 ~ 20362210 (-)
AMCG00016460 kif3a coding upstream 17430 20372554 ~ 20379132 (-)
AMCG00016473 sat1a.2,sat1,LOC107562204,LOC107591482,LOC107725150,LOC107654323 coding upstream 38473 20393597 ~ 20398749 (-)
AMCG00016472 sat1a.1,sat1,LOC107654323,LOC107734365,LOC107665519,LOC107591481,LOC107725087 coding upstream 46264 20401388 ~ 20405776 (-)
AMCG00016470 prdx4,prdx2 coding upstream 66830 20421954 ~ 20425750 (-)
G13680 NA non-coding downstream 25501 20315742 ~ 20316579 (-)
G13615 NA non-coding downstream 337140 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 1083523 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 1085161 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 1088666 19165586 ~ 19253414 (-)
G13762 NA non-coding upstream 113122 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 131757 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 240205 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 291712 20646836 ~ 20652268 (-)
G13812 NA non-coding upstream 406299 20761423 ~ 20761693 (-)
AMCG00016453 NA other downstream 206533 20128908 ~ 20135547 (-)
G13367 NA other downstream 1236699 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2800738 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3075333 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3472078 16866318 ~ 16870002 (-)
AMCG00016479 NA other upstream 261385 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 311018 20666142 ~ 20683024 (-)
G13962 NA other upstream 3099968 23455092 ~ 23455811 (-)
G13969 NA other upstream 3344025 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3485938 23841062 ~ 23862739 (-)

Expression


Co-expression Network