AMCG00016479


Basic Information

Item Value
gene id AMCG00016479
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20616509 ~ 20636960 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016479
GTTGCCAGGGCGACCCGCGCCGGGTGCGCCTCTCTCGGGACGGGCTCGTGCAGCAGACACAGTAACGCACCTGCACGCCGCATTTCTATTTAAACCCTGGATTTTGATACATAATACAAACAGAAAGTCGCCGCCGGCGGTAGTAGTGGAACTGAAGGATGGCAGGAGCAGAGCCCACCACTAAAGTCCTCATCACAGAAGCCCCCGAGCCTGGCGCGCAATCCAGCCCCACCTGCATAGACCCCTACCAGCGCTCTGTGCAGTACATGGAGCAGCACAACATCCTGCACATCTTCCGGtgTTGTGGCCTAGCCCTGATGGCAATGTGCATCTTCTTCATCGTGGATCGGGATCGCTTGTACGTCCTGGTCTACGCCACCGGCAACGACAGCATCTGGAGAGCAGCCTGGATCGGGCTGTTCACGGGATTCGCTCTCTTCTGTACCTCTGTGATGGGGATGTACGCTATTCTGAAGGCAAAAAGGAAACTTATTCTTGCATTTGTCCCCAACCTCTTCCTGAAGCAAATGTTGGAGAACTACAACAAGCCACTGCCTGAAGACCTGCCAAGTACTCAGGATGAGATCTACAGGACTACGGGCGTTACAGATGCATGGAACCGCGTCATGACCCAGAAACAGTGCTGTGGAGTCTACGGGCCCCAAGACTGGGTGAAGTACAACTCACAATTCAGGCAGCAGAACTCCGATTCTGAGTATCCCTGGCCCAGGCAGTGCTGCCAGCAAGATGAAGTGGGGGACATTGTGCACATCAATGCCTGCAAGATTGGCGTCGAGCCCTACGTGTTCACTCGTGAGTAA
>TU17099
GGTGCGCCTCTCTCGGGACGGGCTCGTGCAGCAGACACAGTAACGCACCTGCACGCCGCATTTCTATTTAAACCCTGGATTTTGATACATAATACAAACAGAAAGTCGCCGCCGGCGGTAGTAGTGGAACTGAAGGATGGCAGGAGCAGAGCCCACCACTAAAGTCCTCATCACAGAAGCCCCCGAGCCTGGCGCGCAATCCAGCCCCACCTGCATAGACCCCTACCAGCGCTCTGTGCAGTACATGGAGCAGCACAACATCCTGCACATCTTCCGGGTGCAAATGAAGATAAAGAAGAAGCAGGAATCcgaacaaaatgcagaaaataatgtGTGATCATGGCCATGTATTAAACCCAGTATCCTGAACCTGATTTTGTGTTTCActtgtgattttctttattatttcatgtCCGGAGCAGCATGAGACAC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17347 UPK1; uroplakin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016479 True 821 mRNA 0.55 6 20616509 20636960
TU17099 False 432 lncRNA 0.50 3 20630472 20636938

Neighbor

gene id symbol gene type direction distance location
AMCG00016476 NA coding downstream 92752 20517799 ~ 20523757 (-)
AMCG00016477 NA coding downstream 106041 20506848 ~ 20510468 (-)
AMCG00016471 NA coding downstream 169478 20441545 ~ 20447031 (-)
AMCG00016470 prdx4,prdx2 coding downstream 190759 20421954 ~ 20425750 (-)
AMCG00016472 sat1a.1,sat1,LOC107654323,LOC107734365,LOC107665519,LOC107591481,LOC107725087 coding downstream 210733 20401388 ~ 20405776 (-)
AMCG00016481 NA coding upstream 287020 20923980 ~ 20973210 (-)
AMCG00016483 NA coding upstream 350032 20986992 ~ 21012361 (-)
AMCG00016484 NA coding upstream 437134 21074094 ~ 21245418 (-)
AMCG00016485 igsf11 coding upstream 1051851 21688811 ~ 21709689 (-)
AMCG00016486 NA coding upstream 1273910 21910870 ~ 21921639 (-)
G13789 NA non-coding downstream 17744 20595329 ~ 20598765 (-)
G13762 NA non-coding downstream 103105 20468246 ~ 20513404 (-)
G13766 NA non-coding downstream 124488 20486881 ~ 20492021 (-)
G13680 NA non-coding downstream 299930 20315742 ~ 20316579 (-)
G13615 NA non-coding downstream 611569 20003149 ~ 20004940 (-)
G13806 NA non-coding upstream 9876 20646836 ~ 20652268 (-)
G13812 NA non-coding upstream 124463 20761423 ~ 20761693 (-)
G13819 NA non-coding upstream 270958 20907918 ~ 20908118 (-)
G13860 NA non-coding upstream 1145104 21782064 ~ 21782296 (-)
G13861 NA non-coding upstream 1148284 21785244 ~ 21785716 (-)
AMCG00016453 NA other downstream 480962 20128908 ~ 20135547 (-)
G13367 NA other downstream 1511128 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 3075167 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3349762 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3746507 16866318 ~ 16870002 (-)
AMCG00016480 NA other upstream 29182 20666142 ~ 20683024 (-)
G13962 NA other upstream 2818132 23455092 ~ 23455811 (-)
G13969 NA other upstream 3062189 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3204102 23841062 ~ 23862739 (-)
AMCG00016505 NA other upstream 3227621 23864581 ~ 23885258 (-)

Expression


Co-expression Network