AMCG00016517


Basic Information

Item Value
gene id AMCG00016517
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24029390 ~ 24039800 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016517
CACAGTGCTGTACTGACTAGTGGCATCACCACAGTCACATGTCTAAGGAAACTTGGACCAGGGTCAGGGAAATGGGAAAATACTAACTGTCTCTGTCACTGTTTGTGAGACTGTACATTTCATCTACTTCCATGAATACCGTCAGAcgaataaagaaaacaaacaaacataaaacagctccagctccaggatagagacagagagaaacgcCCTCAGACGCACACCTGTGGCCGCGGGAACTGAAGGGTTAGTGAGTGCTGACGTCACTGGGCGGCTGTGGAGGAAGTTGCCGCGCCGCTCGCCACTGTGCGGAACAGGCGGCTGCGTGAGGAGTGGGACGCGGGGCTTTAGGGCTCGTCTTAGGCGCGACTGCAGTGCGGGTCCTGCGTGTCTGGCGGCAGCTGCTCCGTGTCCGGACACCCGCACGGCGAGCTGTTCTAGGCTGTTCCATGTCGCCATAACTCCCCGCCGCCCGGAGTGGCTGGACCTCTGCGCCGAGCCGTGGGGGGGAGCTCCGTCTGCGCACAGAAAGGTGACTTCTGCACCAGGCGGCGTCCCGCACTTCTGCAGGGAAACAGGGATGCAATTAGATCTACAGTTCAGAGCAGGGCTGTAGGGTGGAGGCAGCATGAAGCGGAAGGGTGGCCAGCCGGCGGGGGAGGACGAGTCTCTGTGCTGCTGCGAGTATGTTGACCGCCAGGGGGAGAAGAGCCACCTGCTGGCTTGCTGCTGCGACTGTGCCGAGCTGGATCAGGCCTGCGACAGGTGGCTGAAGCGTGAGTCGCTTGACCCGGGCTCGGTGTCGCGGGTGGCAGAGACCGTGTCGGACCGACTGCGCGTGCCCTGGCTGTCGGGCGCCCGGCGGGTGGACCTGACGGTGTTGCCGCCACTCGTGCTGCTTCCTGTCCTGCTGCACGTGGCTGCACTGCACTTCCTGCTGGGGCTGGTGGTCCTAGCCACACTGCCGGCGCTGGTGCTGTGGTACTACTATGTCACGCACCGCAAGAAGGGCCGCACACTGTTCTTTCTCAGCCTGGGGCTCTTCTCCCTGGTCTACATGTACTACCTGTTCCTCACCGAGGTCGTGCCCAAGGGCGACGTGGGGCTGCTGCAGCTGGCAGCCATTACCGTCGGGCTGGTCCTGACTCTGGCCGCTCTGGCACAAACCAAGAAGGACCCCGGATACCTCAGGAGccagccccccccgccccctgctggagcacacagcacagtcacCTATCCTCCTGAGCGGGCGGGGCCAGGCGGGGTCCCCAACGGTGCGCGGCATGAGGTGTTGTTCCTGAATGGTGCGTCTCACTCGGAGCTGGGCAGAGCCAGCGGGGACCAGGAGAGGGTCAAAAAGAACTGGTGCCCCGCCTGCAGGGTGGTGCGCCCCCCCCGCGCTGGGCACTGCCGCATCTGTGCCGCCTGTGTGCAGCGCCTCGACCACCACTGCGTCTGGATCAACAGCTGCGTGGGCCAAGCCAATCACCGCTGCTTCCTGCTCACTCTGCTGCTGTTCCTGTTGACCGCGCTGTACGGGATCAGCCTGACGCTGGGCAGCGTGTGTCCCCGGCAGAGCGTCCTCATCGCCCTCCTCTACTGCCCTGGCGTGTACCAGCACTACAGCTCTGCGCTGTGCTTCACCTGTGCCTGGTACTGCAGCATCGTGACTGGGGGGCTGCTCCATCTGTTCGTGCTGCAGCTGATCAACGTGAGCTACAACGTGACGGAGCGAGAGGCGCGGTTGGCTCTGCGCGAGAAGACGGGGCGCCGGCGGCTGTGGGGCATGATCGTGGACACCGGCATCTACACACGCGGCTTCCGCAAGAACTGGGTCGACTTCCTGTCCATGGGCGGCCTGGGGCCCCTACCCCAGCGCCTCACTGACCTGGTGTAGCAGTGGCCCGAGGCAGCCAGTCACAGGCAATGCTGGTGGAGCCTTCCTTCCCCAGTGGTGCGCAGAGGTCTCCAACAGGGAGGTATGGGCCTGTCCGCACCCAACCGCCCAGGGGAGCTGCCACCAGCACCAGGCCTGCACACCTGCACCTGTCAGGGTTTTGTTCTGATTTTACGCATAGCTCTGCTTAGATTAGAGTAGACGCACAGGCTGGCAGTGGTGTGTCCACAGTGTGGTATTCGAGGCCTAAGGCAGGATGGACTAGCATATGAATCTATGACATGTCATCCCAGTCCAGTTCCTGAGTAAAGAAGGAAGTGCGACTTTTCCACACTGAATAAGCATTAATCATGAGTCCTGTTTGAGACATGCCTCCTCTTTTCAGAATCCATCTCCTGTCTTGTTCAGCTAGTGTCCCTGTACAACCTCACTGCACATCTGGCACACTGagcactgtcctctctgtcttGCTTGGAGACAACCCACAAGGTGAAATGGCTGATTCGTTACCCAGGCTGTGGAACAGTCAAGTGTCTCATAACCAGTGGGCTGTGGCACGAACAGGAGTTACATATGAGGgggagtggggggaaaaaaaaaaaagtttaaattaagtatgttttgcattttttcaatttaaataggAGTGCCCTGTTTGTAATACTTCAAAAGGTTACACCTACCTAACTTCAACatcaacattttcaattaatacaaGTAACGTCCTAAATTATCGGAATCAACGGTGATGTCGCActgcagagaagagagagagatgtttgaTGTAACCCATGGcccattttgacattttgacacattttaagGACTAACAGAAGCCTGAACCGAACTGGGCCCATACAGATCTACACCCCATCCAATTAAATATGTAGGAAATAAATCCCAACCTTAACAAAATCCTAAATTCGCTGGGGGCTCCCTGCTCTCTAAACAACGCACATGTAATCGTCAGGCCATTTCTACTTCCATCTGTATGCCTATTAaaactagattttttttattttagtttttatcgAGAATTGTTTCTTAAACATCCAGATCTTGAGTTTATATCTAAATTCCTTACACCTAAATCATATTTAGAAACTTATGCAGAAAACAGAGAATGGTCAATATAGTATGACATCAGTAGGTTACCTGCCCCTTTACAGTTGTCAAATTTTCATATTTCTGGTGTGCCACAGAATcatatgaacacatttaaaaataaataaaataatccctAACGAGAACAACATAACTGTATATTGGTACAAGCTCAGGATTATTGATGAAAGTTTTGAAGTTCAGTTTGGGGGGCTAATTAACTTGAAAATGTGTCATTCTAGGAATTGTCAATCTCTTACTCATGCTACTCAGTCTAGCTTGCCTCAGTTTAGATGAAGACTGCTATACTGCTTCCTCCCACTTGATGGTGGTATGTCACCACAGCTCTGTATGCAAAAGCTTAACGTGATCAGATTGTTTGTACTATGAAGCCTGAAGCTCCGACAGTACTGTTCTCTGCACAATCGTACCACTAGGCCAGCGGGTCCATGCCTTCTGGCCAGGCTGACTGAGGAGTCGGGGATCTAGATTCAACTCCAGAGGCCGACTGCTAGCCTCCTCCCAACGTTAGTAATGTTACCTTGAGTCAGACAGTATTTGTGGAAGTGGTGTATGTTCCTGCAAGCGGGGGAGGGTTGCCTTATGTAATGTGTGACCGCACGCTCTTCCTGACTAGAGTTGAGATAAAGGTGCAGTGTTCACCGCAGTTTGACACCCAAGCCGACTGTCATTATGCTGAGGTCCCCTGCATTTGACACCTTAAGAATCAAATGAGATGTATTTCAACCAAACAGAAtggaatggaaaaggaaaactgCTGAGGCTGTGAGTTCAGTGGCGGCAGGTCAGAGGTTTGCCTGGCCGAGAGCGCTGTGCTGTTCCACCTTTATAAACTTCACAGCTGGGTGCGTGAGGGTCAGGACAGTCTTCCATCACTCAATGTCATCGCTGACACCAACAGTATGAGCTAACTGTCCAGGGCTGGGGTTGAAGCCATGGGAGAGCAAATGACATGTGAGGTGCCCTGTTGGGTACTTACCAGAGATCCTGtgtgtggtgttttgttttccatcgTTGCTACTGAAGATCTGCTGGTGGTCAGATGTGTGCTCAGTGAGCCGCATTTATCTGCTTCAGTGCGTGTCTTTCACACAATCATTTAATGTGCACAAAAATAGAGCATTGTTAATAGATTTTGCTTTTGtagtatataaattattttatatcaatGTATATTAGTgtaaatgctatatatatatatatgtatatatatatatatatatatgtatatgtatgtatatcttgtataaaatgcacacaaaaaacatacatttgtttaatcaagtgcaataaatgaaaactttatATACAGGTGTTCCTGAGAAATTACTCAATATGATCAGGAGTTGATTGGCAGCTGATTAAATAAACACTAGAACTTGAAAAGGATGCAGTGGATGTACAGAGACCTTTTTTTATTGgtacataattatattaaataaggGCTTTATACATGAGCAATTAATTCCCTCCCCCAttgttttccttaaataaaactGAGCTTTGTTTCCTCCCCCTGAGCATGAGCATGTGCGGGAGTTGTGGGGCCCATGTGTGTCACTGCAGCCACATCCTGTGTGAGTGTGATGAAGGCAGCAGGATGAAGCACAGGCACGTGTCCGGGGGCAGGTGGGCACAAGGAGCTTGGGCACAGAGGACCCCAACACAGTCCTAGCCTTCAGGGCTGGTATCCTAGAAATGCCCTTCGCCAATAAACAGATGCCCCCGAGCAGTGACACTCTTCCGCTACAGCAAAGACACGGGCTGGCACCTGCCTACCGTTGATGCCCACTGTTACAGTGGACGAAGTAGCCTTTGACCCCTCCCTTAATCAGGACAGGTAGGTGAACTTAAACTGTTGTAGCGATGTGTGGGGAAGAATTAagtcatgtttgttttgaatttgacatCAGGATCCTTACAGTCTAAACGTACAGCCCAGAAATATTAAAgctaattcatatttaaatatatatagttatttaaacaaatcaaagtgGTGGAAACCCC

Function

GO: NA

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016517 True 5035 mRNA 0.51 5 24029390 24039800

Neighbor

gene id symbol gene type direction distance location
AMCG00016518 NA coding downstream 8599 24007888 ~ 24020791 (-)
AMCG00016511 NA coding downstream 78061 23945194 ~ 23951329 (-)
AMCG00016513 NA coding downstream 92156 23934903 ~ 23937234 (-)
AMCG00016514 NA coding downstream 97810 23927891 ~ 23931580 (-)
AMCG00016510 NA coding downstream 103674 23916943 ~ 23925716 (-)
AMCG00016523 NA coding upstream 8020 24047820 ~ 24062602 (-)
AMCG00016524 NA coding upstream 23467 24063267 ~ 24068003 (-)
AMCG00016521 atp6v1a,atp6v1ab,LOC107584963,LOC107654231,LOC107701669,LOC107591235 coding upstream 33642 24073442 ~ 24092600 (-)
AMCG00016522 NA coding upstream 83636 24123436 ~ 24141614 (-)
AMCG00016525 LOC107580614 coding upstream 158085 24197885 ~ 24213659 (-)
G14016 NA non-coding downstream 86012 23942044 ~ 23943378 (-)
G14015 NA non-coding downstream 87852 23941318 ~ 23941538 (-)
G14013 NA non-coding downstream 94923 23934166 ~ 23934467 (-)
G14012 NA non-coding downstream 95547 23933009 ~ 23933843 (-)
G13990 NA non-coding downstream 146431 23880959 ~ 23882959 (-)
G14092 NA non-coding upstream 107599 24147399 ~ 24147677 (-)
G14093 NA non-coding upstream 125357 24165157 ~ 24165420 (-)
G14171 NA non-coding upstream 296144 24335944 ~ 24336827 (-)
G14181 NA non-coding upstream 385364 24425164 ~ 24425498 (-)
G14213 NA non-coding upstream 561898 24601698 ~ 24602007 (-)
AMCG00016505 NA other downstream 144132 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 166651 23841062 ~ 23862739 (-)
G13969 NA other downstream 329135 23699149 ~ 23700255 (-)
G13962 NA other downstream 573579 23455092 ~ 23455811 (-)
AMCG00016480 NA other downstream 3346366 20666142 ~ 20683024 (-)
AMCG00016531 NA other upstream 269456 24309256 ~ 24323458 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other upstream 513892 24553692 ~ 24566956 (-)
G14305 NA other upstream 841348 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 968174 25007974 ~ 25015343 (-)
G14392 NA other upstream 1040768 25080568 ~ 25083699 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023417 zdhhc23b coding NC_007135.7 CM002908.2 21122836 ~ 21131607 (-)