AMCG00016555 (mtmr6,LOC104951663)


Basic Information

Item Value
gene id AMCG00016555
gene name mtmr6,LOC104951663
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24883903 ~ 24894419 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016555
CCCTGTGCTGATTCGCATCGTCTGCCGTGAAACCGAGCATGGACTACATCCGGACGCCGAAGTCAGAAAAGCCCACAGCTCTGAACAGCGCCCATGCAGCGGTGGCTCGGAACGTGATGACGTCATTCGTAGAACCCGTCAGCCCACCCGCCGCCGCCTTCAAAGATCGGGTGGAGCAGGTGAAGCTGTTGGACCGCTTCAGTAACAAGTTCACCTCGGGAACGCTGTACCTCACTGCCACCCACCTGCTCTTCATAGAGGCCAGTGACAACAACGCGCAGGAGATATGGaTCCTGCACCACCACATTGCCTCAGTGGAGAAGCTGTCCCTGACCACGAGCGGCTGCCCCCTGCTCATCCAGTGCCGTAACTTCCGGGTGGTGCAGTTCGTGGTGCCGCGGGAGAGGGACTGCCATGATGTCTACAGCTCACTGCTGCGCCTGCTGCGCCCAGtgTCCTTCAACCATCTCTACGCTTTCTCCTACAACCCCAAGCAGAAAGAGCAGCAGCGAGAGGAGGGCTGGCAGCTCATCGACCTGGCATCGGAGTTCGAGCGGATGGGGGTGCCTTGCGACCACTGGCAGCTGACAGATGCCAACAGGGGTTACAAGATCTGCGAGACGTATCCGCAAGACCTGTACGTGCCCATCTCGGCCAGCAAGCCCATCATCGTGGGAAGCTCGAAATTTAGGAGCAAAGGGCGCTTCCCGGTGCTTTCCTATTTCTACCAGGAGAAGaagGCGGCGGTGTGTCGGTGCAGCCAGCCCCTGTCCGGCTTCAGTGCCCGGTGTCTGGAGGACGAGCACATGCTGCAGGCCATCAGCAAGACTAACCCCAACAGCCGCTTCATGTACGTGATGGACACCCGGCCCAAGCTCAACGCGCTGGCCAACAGGGCGGCAGGTAAAGGGTACGAGAACGAGGACAACTATTCCAACATCCGCTTCCAGTTCGTGGGCATTGAGAACATCCACGTCATGAGGGCCAGCCTGCAGAAGCTCCTGGAAGTGCTGGGCAGCAGGGCCCTGTCTGTGACTGACTACCTGCTGGGGCTGGAAAGCTCGGGCTGGCTGCGGCATGTCAAAGCTGTCCTGGATGCAGCCATGGTCCTGACTAAAgcagTGACCGTGGAGGGGGCCAGTGTGCTGGTGCACTGCTCGGATGGCTGGGATCGCACGGCGCAGGTGTTGATCGAAAAGGACTGGATCTCGTTCGGACACAAGTTCGCCGACAGGTGTGACCAGCTGGACGGGGACCCTAAGGAGGTGTCCCCAGTGTTCACGCAGTTCCTGGAGTGCGTGTGGCAGCTGACCGAGCAGTTTCCTCAGGCCTTCCAGTACAACGAGTGGTTCCTCATCCAGATCCACGAGCACGTGCACTCCTGCCAGTACGGCAACTTCCTGGGCAACTGCCAGAGAGAGCGGGAGGAGCTGCAGCTGAAGGAGAAGACGCACTCCCTGTGGCCCGCCCTCCTGGACGACCAGAGCCACTACCTGAACCCCTTCTACTGCCCTGGGTACGCAGAGACGCACCCCGTCCTGGAGCCCAGCACCCTGCCCTTCCACTTCAAGCTGTGGAGGAACCTGTACCACCAGTTCGACCGGACCATGCACCCCCGCCAGTCTGTGCTGAACACGGTGTTGGCCCTGAGAGAGAAGAGCCAGGAGCTGGAAAGCACAGCCAGGGCACTGCAGGCTAAGCTGCAGCAGCTGGACTTCAGCAGCCTGCCCGGGGACGGGAACAGCATCCCGCGGGAGAGCGACCCCCTGGCCCGGCCGCAGTCCCTAATCCTGGACGCCCCGCTGAGCCGcaaggaggagcaggaggagggcGAGGAGGCGGGGGAGCGCCGGGGCCAGGGCGGGCTGCCGGGCAGCGGGGGCGAGCGGACAGTggagggcagcagcagctcgGAGAACGGCTACAGTGAGCTCCAGCAGCCCTTTGCGAAGCAGGAGCCCCAGCTGGTCAGCCTGGAGCTCGGGGTGGCAAAGATGACCTGCTAG

Function

symbol description
mtmr6 Predicted to enable phosphatidylinositol-3,5-bisphosphate phosphatase activity and phosphatidylinositol-3-phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be active in cytoplasm; membrane; and nuclear envelope. Orthologous to human MTMR6 (myotubularin related protein 6).

NR:

description
PREDICTED: myotubularin-related protein 6 isoform X1

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18083 MTMR6_7_8; myotubularin-related protein 6/7/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016555 True 2006 mRNA 0.62 15 24883903 24894419

Neighbor

gene id symbol gene type direction distance location
AMCG00016552 NA coding downstream 5676 24875864 ~ 24878227 (-)
AMCG00016551 NA coding downstream 73991 24802736 ~ 24809912 (-)
AMCG00016550 NA coding downstream 83709 24790148 ~ 24800194 (-)
AMCG00016545 NA coding downstream 97493 24762569 ~ 24786410 (-)
AMCG00016546 LOC108276628,LOC107663623 coding downstream 144781 24721189 ~ 24739122 (-)
AMCG00016556 NA coding upstream 36398 24930817 ~ 24953633 (-)
AMCG00016564 LOC107584968 coding upstream 78628 24973047 ~ 25001455 (-)
AMCG00016565 NA coding upstream 162141 25056560 ~ 25057570 (-)
AMCG00016563 usp12,usp12a,LOC107705210,LOC107591222,LOC107584971 coding upstream 178751 25073170 ~ 25080493 (-)
AMCG00016570 NA coding upstream 211913 25106332 ~ 25107565 (-)
G14245 NA non-coding downstream 103637 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 199368 24683065 ~ 24684535 (-)
G14218 NA non-coding downstream 265558 24615787 ~ 24618345 (-)
G14214 NA non-coding downstream 277582 24606108 ~ 24606321 (-)
G14213 NA non-coding downstream 281896 24601698 ~ 24602007 (-)
G14311 NA non-coding upstream 10702 24905121 ~ 24906546 (-)
G14400 NA non-coding upstream 227671 25122090 ~ 25122375 (-)
G14472 NA non-coding upstream 510476 25404895 ~ 25405101 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 622570 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 648627 25543046 ~ 25545725 (-)
G14305 NA other downstream 1805 24881148 ~ 24882098 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other downstream 316947 24553692 ~ 24566956 (-)
AMCG00016531 NA other downstream 560445 24309256 ~ 24323458 (-)
AMCG00016505 NA other downstream 998645 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 1021164 23841062 ~ 23862739 (-)
AMCG00016562 rnf6 other upstream 113555 25007974 ~ 25015343 (-)
G14392 NA other upstream 186149 25080568 ~ 25083699 (-)
AMCG00016579 NA other upstream 370353 25264772 ~ 25277478 (-)
AMCG00016591 NA other upstream 518897 25413316 ~ 25420371 (-)
G14534 NA other upstream 858576 25752995 ~ 25754472 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location