AMCG00016564 (LOC107584968)


Basic Information

Item Value
gene id AMCG00016564
gene name LOC107584968
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24973047 ~ 25001455 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016564
AGCAATTAGTAATGAGTGAAATTAGCAAGGACACAACTTGCCTCTCTCCCCAAAGCGATGACGAGGGTGTGGAGGCCCGGATTTGCTCAAGGCTGTCAGATAAGCGCATTCCCCGGACGTTCGAGAAAAGACCCGCTTGTTCGTCCTCGGGCTACCAGAAGGCGGATGATGAGATGTCTGGCACCACCTCTCAGGCGGACCTGCTCGATGCCACCGCCAGGACCATCCTGCTGAACCAGGCGCAGGTCACCAAGTTCTGCGACAACCATGTCAGCACGGCGAAGTATGGTTTCCTGACCTTCCTCCCGCGCTTCCTGTACGAGCAGATCAGGAGAGCGGCCAACGCCTTCTTCCTGTTCATCGCCTTACTGCAGcAAATCCCGGACGTGTCTCCCACTGGCCGCTATACCACCCTGGTGCCCCTCATCTTCATCCTGACTGTGGCGGGAATCAAGGAGATCATTGAGGACTATGTGAGCGTGCCTGGTTACGGGCCCTGTGCTGGCCCTTGTTACGCAATGGCACCTGGCAGACCGTCATATGGAAGCAGTGAGCCCCAAGCGATGTGCTACACAGAGACCTCCAACCTGGACGGGGAGACCAACCTGAAGATACGCCAGGGTCTGCCCCTGACTGCTGGTGCCCAGTCTCAGGAGGACCTGATGTCCATCGCCGGGCGGCTGGAGTGCGAGGGGCCCAACCGGCACCTGTACGACTTCACCGGCACCCTGCGACTCGACAACCACAATCCGGTCCCGCTGGGTCCAGACCAGGTTCTGCTGCGGGGGGCACAGCTGCGGAACACCCAGTGGGTTGTGGGAATTGTAGTTTACACTGGACACGATTCCAAACTCATGCAGAACTCCACCAAGGCCCCCCTGAAGCGCTCGAACGTGGAGCGGGTCACCAACATGCAGATCCTGGTGCTGTTCTGCATCCTCCTGGTGATGGCACTGGTGAGCTCGGTGGGCGCGGCCATCTGGAACAAACAGCACACTGAGCAGACCTGCTGGTACCTGTCCAGGACAGCTGACATCTCCACCAACTTCTGGTACAACCTGCTGACCTTCATCATCCTCTACAACAACCTGATCCCCATCAGCCTGCTGGTCACTCTGGAGGTGGTGAAGTTCACACAGGCTCTCTTCATCAACTGGGACACGGAGATGTACTACGCTGAGACTGATACCCCCGCCATGGCGAGGACATCCAACCTCAACGAGGAACTGGGCCAGGTGAAGTACCTCTTCTCAGACAAGACAGGGACCCTAACCTGCAACGTCATGCACTTTAAGAAATGCACCATCGCCGGGATCACATACGGgCACTTCCCTGACTTGGACTGCGACCCCTCCATGGAAGACTTCAGccacCTCCCATCAAGCAGCCACAACTCCACGGAGTTCGACGACCCGGCGCTCATACAGAACATCGAAAAGAATCACACCACAGCTCCTCAGATCTGTGAGTTCCTCACCATGATGGCTGTGTGTCACACTGTGGTTCCTGAGAGGGATGGGGAGCAGATCATCTACCAGGCGTCTTCTCCAGCCCAACCCAACCCAACACAGCCCAGCTCAACACAGCCCAACACAGCCCAGCCCAACACAGCCCAACACAACCCAACACAGCCCAAcccaacacagtgcatcacagcagttctctccctcactctcacactgacGGGCAGTTTGAACAGTACTCTGTGGTGTGTGGCGAAGGTGGAGAGAGAGGCCCTGACCTTCCTCCTGTGTTTTGCAGATGAGGGCGCGCTGGTGAAAGGAGCAAAAGGCCTGGGCTTTGCGTTTACTGCCAGGACGCCGAGCTCTGTCATCATTGACGCGAGGGGGAAGGAGCAGAGCTTCGAGCTGCTGAATGTGCTGGAGTTCTCCAGTAACCGCAAGAGGATGTCCGTGATCGTGAGAACGCCATCGGGGAGACTGCGTCTGTACTGCAAGGGCGCGTTTGCCACTGAAGGTATGCCAGGCCTGACCCCGTCCCCTCAGCCTCTCTCTTGCTGCCTCTCTGCTTCACTTCTCCCCTGCGTAATCTGCATCTATCCCCCACcacgctctctccctccctccctcagtctCACAGTTTGCCCCCTGCCCTCCCCAGGTCTGCGCACACTGTGCTTTGCCTATGTGGATCTGTCGGAGAGTGCGTATCAGGAGTGGCTGAGGGACTATACACGCATCAGCACTAACCTCCTCCTGCTGGGAGCCACGGCCATCGAGGACCGACTCCAGGCTGGGGTCCCCGAGACCATATCCACTCTGATAAGGGCCAACATCAAGATCTGGGTCCTGACTGGAGACAAGCAAGAGACGGCCATCAACATCGGTGAGGAGGGGGAGGTGCAGGGTGTTGTGGCGGGGTTCCTCAGCTCCCTGTGTCTTGGAGTGACTTATTTTGCACAGGGCTGCTGTTTGCTGGTGGTGGGGAGGTTGATCGCTGACAGCACAGCAGTGTCAGATGATTCAGGTTCTTGGAttcaggaggaaaaaaaagatattcaAAAATGTGCCACAGCTGGCTGTGTGGcacactctctcctctctcagtaCTGCGGGCGCGGAGACCTGTCTGTACAGGACACCCTGCCTCCGCGTCCCCATCACTTGGATTCAGGAGACATTTTAAACCTGCAATTATCCAGCCTACAACAATCTCAttccttcatttttaaatataaagaaaaagcctTGGGAAGCAAGGGATCGTCCTGCAGTTCCTGGAAAGGCAACAATGGCCTCATTGAAGGAACAGGGGATAAcaagatgaaaataaacagatttatgTATAAACAGGGGCAAACCCAAGGCCCACCCAGTATGGAGTTTCTCTCTGAGGGGTGCGGGGGTGGGATAGCCCCCTCTGCTGAGTGCGTCTGTGTGGAGATCTGGAGGCAGGGGGCTGCAGGggtt

Function

NR:

description
PREDICTED: phospholipid-transporting ATPase IB-like isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016564 True 2930 mRNA 0.57 24 24973047 25001455

Neighbor

gene id symbol gene type direction distance location
AMCG00016556 NA coding downstream 19414 24930817 ~ 24953633 (-)
AMCG00016555 mtmr6,LOC104951663 coding downstream 78628 24883903 ~ 24894419 (-)
AMCG00016552 NA coding downstream 94820 24875864 ~ 24878227 (-)
AMCG00016551 NA coding downstream 163135 24802736 ~ 24809912 (-)
AMCG00016550 NA coding downstream 172853 24790148 ~ 24800194 (-)
AMCG00016565 NA coding upstream 55105 25056560 ~ 25057570 (-)
AMCG00016563 usp12,usp12a,LOC107705210,LOC107591222,LOC107584971 coding upstream 71715 25073170 ~ 25080493 (-)
AMCG00016570 NA coding upstream 104877 25106332 ~ 25107565 (-)
AMCG00016569 NA coding upstream 123328 25124783 ~ 25133808 (-)
AMCG00016573 NA coding upstream 213612 25215067 ~ 25218658 (-)
G14311 NA non-coding downstream 66501 24905121 ~ 24906546 (-)
G14245 NA non-coding downstream 192781 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 288512 24683065 ~ 24684535 (-)
G14218 NA non-coding downstream 354702 24615787 ~ 24618345 (-)
G14214 NA non-coding downstream 366726 24606108 ~ 24606321 (-)
G14400 NA non-coding upstream 120635 25122090 ~ 25122375 (-)
G14472 NA non-coding upstream 403440 25404895 ~ 25405101 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 515534 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 541591 25543046 ~ 25545725 (-)
G14507 NA non-coding upstream 603325 25604780 ~ 25609059 (-)
G14305 NA other downstream 90949 24881148 ~ 24882098 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other downstream 406091 24553692 ~ 24566956 (-)
AMCG00016531 NA other downstream 649589 24309256 ~ 24323458 (-)
AMCG00016505 NA other downstream 1087789 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 1110308 23841062 ~ 23862739 (-)
AMCG00016562 rnf6 other upstream 6519 25007974 ~ 25015343 (-)
G14392 NA other upstream 79113 25080568 ~ 25083699 (-)
AMCG00016579 NA other upstream 263317 25264772 ~ 25277478 (-)
AMCG00016591 NA other upstream 411861 25413316 ~ 25420371 (-)
G14534 NA other upstream 751540 25752995 ~ 25754472 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location