Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00016572 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 25220304 ~ 25221568 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006144 | purine nucleobase metabolic process | biological_process |
| GO:0019628 | urate catabolic process | biological_process |
| GO:0019428 | allantoin biosynthetic process | biological_process |
| GO:0005777 | peroxisome | cellular_component |
| GO:0016831 | carboxy-lyase activity | molecular_function |
| id | description |
|---|---|
| K13485 | PRHOXNB, URAD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00016572 | True | 585 | mRNA | 0.59 | 2 | 25220304 | 25221568 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00016573 | NA | coding | downstream | 1646 | 25215067 ~ 25218658 (-) |
| AMCG00016569 | NA | coding | downstream | 86496 | 25124783 ~ 25133808 (-) |
| AMCG00016570 | NA | coding | downstream | 112739 | 25106332 ~ 25107565 (-) |
| AMCG00016563 | usp12,usp12a,LOC107705210,LOC107591222,LOC107584971 | coding | downstream | 139811 | 25073170 ~ 25080493 (-) |
| AMCG00016565 | NA | coding | downstream | 162734 | 25056560 ~ 25057570 (-) |
| AMCG00016574 | NA | coding | upstream | 2497 | 25224065 ~ 25234275 (-) |
| AMCG00016575 | NA | coding | upstream | 13424 | 25234992 ~ 25237511 (-) |
| AMCG00016583 | NA | coding | upstream | 58087 | 25279655 ~ 25282226 (-) |
| AMCG00016581 | NA | coding | upstream | 60666 | 25282234 ~ 25284427 (-) |
| AMCG00016578 | NA | coding | upstream | 63561 | 25285129 ~ 25311138 (-) |
| G14400 | NA | non-coding | downstream | 97929 | 25122090 ~ 25122375 (-) |
| G14311 | NA | non-coding | downstream | 313758 | 24905121 ~ 24906546 (-) |
| G14245 | NA | non-coding | downstream | 440038 | 24716726 ~ 24780266 (-) |
| G14222 | NA | non-coding | downstream | 535769 | 24683065 ~ 24684535 (-) |
| G14218 | NA | non-coding | downstream | 601959 | 24615787 ~ 24618345 (-) |
| G14472 | NA | non-coding | upstream | 183327 | 25404895 ~ 25405101 (-) |
| G14487 | rpl19,LOC101068736,LOC103368168 | non-coding | upstream | 295421 | 25516989 ~ 25520096 (-) |
| G14496 | NA | non-coding | upstream | 321478 | 25543046 ~ 25545725 (-) |
| G14507 | NA | non-coding | upstream | 383212 | 25604780 ~ 25609059 (-) |
| G14517 | NA | non-coding | upstream | 450736 | 25672304 ~ 25675200 (-) |
| G14392 | NA | other | downstream | 136605 | 25080568 ~ 25083699 (-) |
| AMCG00016562 | rnf6 | other | downstream | 204961 | 25007974 ~ 25015343 (-) |
| G14305 | NA | other | downstream | 338206 | 24881148 ~ 24882098 (-) |
| AMCG00016538 | smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 | other | downstream | 653348 | 24553692 ~ 24566956 (-) |
| AMCG00016531 | NA | other | downstream | 896846 | 24309256 ~ 24323458 (-) |
| AMCG00016579 | NA | other | upstream | 43204 | 25264772 ~ 25277478 (-) |
| AMCG00016591 | NA | other | upstream | 191748 | 25413316 ~ 25420371 (-) |
| G14534 | NA | other | upstream | 531427 | 25752995 ~ 25754472 (-) |
| G14637 | NA | other | upstream | 859935 | 26081503 ~ 26083167 (-) |
| AMCG00016617 | NA | other | upstream | 925942 | 26147510 ~ 26149543 (-) |
