AMCG00016590


Basic Information

Item Value
gene id AMCG00016590
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25421283 ~ 25423659 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016590
GTCATCTTTGTGAACAGGCACAGGGCTGCACTCATTCAGAGGGTTTCTCAGGTGAAGCCCCTGGCAGATGCCCTACTCTCACAAGGCCTGATACAAGAAGAGACGTACACTAATATCTGCGCTGCTGCCACCCGTCAGGACCGCATGAGAGAGCTGTATGCGGCCCTGCATTGTACGGGAGACCGGGCAAAAGCTGCCTTTTACACCATCCTGAAAGATGCAGAACCCTATCTCGTCGAAGACCTGGGTCCACTGGAGACTGAAATTAGAGGAGACCCCCAATCATCAGGATCAGTCAGTGATTGCTGTGGAGAAGAGGAGCTCGGGAAGAAATATCAGGAATGGGTCAGATGTGAATATAGTACAGTGCAGGAGTACAACCACCTCCCCGGGGAGGACGTGCAGCTGGAGAATCGGTACACGAAACTGCTGATAATACAGAAGCATCGTCAACAGAAGGAAAGGGAAGAGGAGCTACGTTGCAGAGGAGACTCCTTTCAGGAAGTCATGAATAAGAGAAACTGTGACGAATTCATGAGCACTAGTGTGGAAAACCTGTTTGATCCAGATGAGAATGGAGCAGTACGGAGAACTGTGATATTACAGGGTCAGGCAGGAATTGGAAAGTCTTTTacagcacagaaaataatgtttgattGGGCATCTGGGAAACTTTATTCTGAGATTTTTTTGTACATCTTCCACATAAAGTGCCGACAGCTTAATCTCATTGGCGAAAACATAAGTGTTGTTAATCTAATTCTGAACAACAGTCAGCACTTGGCGCCAGTTGTCACAGAAATCCTGTGTTCTTCAGAGAAGATCCTCTTTATAATAGATGGCTTTGATGAGTTAAAGTATTCACTGGACGTGTCACATTCCCTTTCCCATGACCTCCATGAGCAGAACTCACCTGCAATCACACTGAGTCGTTTGATGAGAAAAGTGATCTTGCCCGAGTGCTTTTTACTGATCACTACAAGGTCAACCGCACTGGACAAACTGACAAGGGTTTTGAAACAACCACGTTACACAGAGATCTTAGGTTTTTCAGAAGAGGGGATGAAAACATACTTTCAGAATTTCTTCCAAGATAAAAAGCAAGCAGTGGATGCCTTTAATTATGTCAAGAGAAATCAAATTATGTTCACAACATGCTTCATTCCAGTCATATGCTGGATTGTTTGCACAGTTTTAAGACAGCAGTTAGAGGAAGGTACAAACATTAACCATGCTTTGAGTACAACCACTACAATATTTGTGTACTTTGTCGACACTTTGCTGGAGCACCACTGCAAGAGTTTGAGACTGCCTGTGCAGGATGTCCTGAGACGCCTTGGTGCTTTAGCAGAAAGTGGCATTAGAGAGCAGCGAGTCTTGTTTGATGATAAACATATACAAGACATCTTTCCAGACCCCTCTCAAGTCCCATCTTCCTTTCTAAATAAAATCTTGCTGAGGAAGAGGATTTTCAAACAGGCTGTGTACAGCTTCATGCACCTCAGCTTTCAGGAGTTCTTCACAGCGTTCTCCTACGTTCTGTGTGATGACAAAGAGGCAGAGGAGAAGGTGGCAGAGCTGCTGGCAGAGAgtaaggagaaaaacaaacgaCATATTTTGATGACTATCCGGTTTCTTTTTGGGCTTTCAAATAGTGAAACTGCAGACTTACTGAAGGAGAAGTATAATCACTCCATTTCACCAGCAATACGGTTCCTTCTGGAAGGATGGATTAAAGAAgtgattaaaatgaacaattttatatttggaGATAATggattaattaacattttgcaCTTTCTCTATGAGATCCACGAAAAAGACTTTGTAACACTTGCAATGGATAACTTTAAAGAGTTAGATCTATCATTCCAACCATTAAAGAGAACGGATTGTGCGGTCGTGACGTACTGTCTTCAAGCCTGCAGACGCTTCGAGAGGCTTAATCTGAGGAGTTGCAACTTAAAATCAGAGGAGCTGGAAATGCTGCTGCCAGTGTTGCCCAAGTGTCAGAGTCTTGAGTTAGTATTTGCAAATAAGACAAAATTAATGTTCAAAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016590 True 2061 mRNA 0.43 3 25421283 25423659

Neighbor

gene id symbol gene type direction distance location
AMCG00016592 abhd10,LOC106590440 coding downstream 53704 25363398 ~ 25367579 (-)
AMCG00016589 NA coding downstream 60601 25357887 ~ 25360682 (-)
AMCG00016593 tagln3b,tagln3,LOC107701685,LOC107705223 coding downstream 63836 25353341 ~ 25357447 (-)
AMCG00016582 NA coding downstream 72141 25347445 ~ 25349142 (-)
AMCG00016577 NA coding downstream 73846 25326868 ~ 25347437 (-)
AMCG00016595 LOC106600984,LOC106607252,LOC107754318,LOC105013306,LOC107670909,LOC107745936,LOC107567387 coding upstream 10175 25433834 ~ 25438775 (-)
AMCG00016596 NA coding upstream 15677 25439336 ~ 25449752 (-)
AMCG00016594 cacnb1,LOC106600985,LOC103392742 coding upstream 26250 25449909 ~ 25483710 (-)
AMCG00016597 NA coding upstream 187904 25611563 ~ 25642333 (-)
AMCG00016600 fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017 coding upstream 252910 25676569 ~ 25703327 (-)
G14472 NA non-coding downstream 16182 25404895 ~ 25405101 (-)
G14400 NA non-coding downstream 298908 25122090 ~ 25122375 (-)
G14311 NA non-coding downstream 514737 24905121 ~ 24906546 (-)
G14245 NA non-coding downstream 641017 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 736748 24683065 ~ 24684535 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 93330 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 119387 25543046 ~ 25545725 (-)
G14507 NA non-coding upstream 181121 25604780 ~ 25609059 (-)
G14517 NA non-coding upstream 248645 25672304 ~ 25675200 (-)
G14578 NA non-coding upstream 494371 25918030 ~ 25921548 (-)
AMCG00016591 NA other downstream 912 25413316 ~ 25420371 (-)
AMCG00016579 NA other downstream 143805 25264772 ~ 25277478 (-)
G14392 NA other downstream 337584 25080568 ~ 25083699 (-)
AMCG00016562 rnf6 other downstream 405940 25007974 ~ 25015343 (-)
G14305 NA other downstream 539185 24881148 ~ 24882098 (-)
G14534 NA other upstream 329336 25752995 ~ 25754472 (-)
G14637 NA other upstream 657844 26081503 ~ 26083167 (-)
AMCG00016617 NA other upstream 723851 26147510 ~ 26149543 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 732862 26156521 ~ 26159922 (-)
G14676 NA other upstream 758085 26181744 ~ 26184778 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000073_01250321_01255305 NA coding CI01000073 null 1250321 ~ 1255319 (+)