AMCG00016664 (hoxb2)


Basic Information

Item Value
gene id AMCG00016664
gene name hoxb2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27210523 ~ 27212922 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016664
atgaattttgaatttgagagggAGATTGGGTTCATAAACAGCCAGCCTTCACTTGCAGAGTGCCTGACGTCTTTTCCCGCTGTCCTGGAGTCATTTCAAACTTCATCAATCAAGGAGTCGACATTAATTCCTCCTCCTTTTGAGCACACGATCCCCAGCCTGAATCCCTGCACTACCAGCCAGCCGCGACCGAGAACCCAAAAAAGAGCTGCCAATGGCCTCCTGCTCCGGACCCCGGCACAGCAGAGCTCGGCTCCGCCAGCGGCTGCCGGCCCTCTGGCTGCCGAGTTCCCCTGGATGAAGGAGAAGAAATCCTCGAAGAAGACCCAGCAGCCGGGGAATGCCACCGCCAccacctcctccccctctccctcgtCCTCCAGCTTCGTAGCAGCGGGTCTGGACTCTCCAGCAGGCACCGAGGCGGCCTCCCCGTTTGCTAGCCAGCCCCTGGAGGCGTCGGGGTCTGCCGCCTCCGAGAGCGAAACCTGTAACTCCGCTTCGTCCTACCCGAACAGCAATGACAATACGCAGCCCGCCTCCGAGGAAGCACCAACAGCACGGCAGGAGCCGGCATCTGCCCCCGACAAAGCCGTCAGATCTCCCGTGTACCCACCGCCCACTACAGATCACCTCCCAACAATGGGCCCGGCCTGCGCATCTGCCCTGGATAATTCGTTCTCAGAGCCGCAGGACCCTGCCACTCTGTCCGATTTGAATTTCTTTTCTGCAGACTCCTGCCTACAGATTTCAGACGCTTTGTCGCCCAGTTTACAAAGCTCCCTGGATAGTCCTGTCGACTTTTCCGAGGAGGATTTCGACTTCTTTACGAGCACACTTTGTACTATAGATTTACAGCATTTGCAATTTTAA

Function

symbol description
hoxb2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
PREDICTED: homeobox protein Hox-B2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09302 HOX_2; homeobox protein HoxA/B2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016664 True 873 mRNA 0.57 2 27210523 27212922

Neighbor

gene id symbol gene type direction distance location
AMCG00016667 NA coding downstream 15622 27187836 ~ 27194901 (-)
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding downstream 235872 26967410 ~ 26974651 (-)
AMCG00016656 LOC107677865 coding downstream 263959 26940980 ~ 26946564 (-)
AMCG00016659 NA coding downstream 308779 26901376 ~ 26901744 (-)
AMCG00016657 NA coding downstream 318591 26888334 ~ 26891932 (-)
AMCG00016665 LOC105013251 coding upstream 4536 27217458 ~ 27219724 (-)
AMCG00016666 hoxb4,hoxb4ab coding upstream 34638 27247560 ~ 27247997 (-)
AMCG00016674 NA coding upstream 73291 27286213 ~ 27286461 (-)
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding upstream 73952 27286874 ~ 27290861 (-)
AMCG00016672 hoxb9ab,hoxb9,hoxb9a,LOC106600835 coding upstream 86681 27299603 ~ 27313173 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 227037 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 468185 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 687476 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 742424 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 785273 26425032 ~ 26425250 (-)
G14999 NA non-coding upstream 31044 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 50791 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 83163 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 182197 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 200078 27413000 ~ 27413229 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 206816 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 567030 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 618223 26582526 ~ 26592300 (-)
G14843 NA other downstream 638882 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 690126 26427339 ~ 26520397 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 52965 27265887 ~ 27279334 (-)
G15026 NA other upstream 156668 27369590 ~ 27370139 (-)
G15067 NA other upstream 188754 27401676 ~ 27403922 (-)
G15076 NA other upstream 211971 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 917090 28130012 ~ 28157200 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025312 hoxb2a coding NC_007114.7 CM002887.2 23752150 ~ 23754831 (+)
grasscarp (Ctenopharyngodon idella) CI01000034_01621979_01623991 HOXB2, HOXB2A coding CI01000034 null 1621789 ~ 1624069 (-)