AMCG00016707 (col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744)


Basic Information

Item Value
gene id AMCG00016707
gene name col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27964578 ~ 27998777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016707
CTGGGGTCTGGATTGGAGATACAGAGACCGGACCCTCACTTGTATGACTGGAGTCTAAAGAAAGGATCAGGATTCCCCTTGCCTCAAAGAGTCTGTATGTCTAATATTTAGACATGCTCAGCTTTGTGGATTTTCGGTTAGCGCTGTTGCTCGCAGCAACAGTACTTTTGGCACGAGGTCAAGGCGAGGACGATCGTCCGGCCGGCAGCTGTACATTGGACGGTCAACTGTATAACGACAAAGATGTGTGGAAACCCGAGCCCTGCCAGATCTGCGTGTGCGACAGCGGCACCGTCATGTGCGACGAGGTGATCTGCGAAGACACATCTGACTGCCCCAATCCAGAAATCCCATTCGGAGAGTGCTGCCCCATCTGCCCCGACTCTGACGGGCCTCCAGTGGACGGTGCCGTGGGACCCAAAGGAGATCGTGGCCCCAAGGGTGATGCGGCCTCCCTGGCAATGATGGTATCCCCGGCCAGCCTGGACTCCCTGGACCCCCTGGCCCCCCTGGACCCCCTGGCCTTGGCGGAAACTTTTCTCCTCAAATGTCCCATGGCTACGATGAGAAGTCCGGCGGTGGAATGGCTGTCCCTGGCCCCATGGGCCCAATGGGTCCCCGCGGTCCTCCTGGCCCCCCTGGCTCATCTGGTCCCCAAGGATTCACTGGACCCCCTGGTGAGCCCGGTGAGGCTGGTGCTGCTGGTCCCATGGGCCCCCGTGGTCCCCCTGGCCCCCCTGGCAAGAACGGAGAAGATGGTGAATCTGGCAAGCCTGGTCGCCCTGGTGAGCGTGGTCCATCCGGCCCTCAGggTGCTCGTGGATTCCCCGGAACCCCTGGACTCCCCGGCATCAAGGGACACAGAGGTTTCAGCGGTCTAGATGGTGCCAAGGGTGACAGTGGCCCTGCTGGTCCCAAGGGAGAGCCTGGTGCAGCTGGTGAGAACGGAACTCCTGGCGCAATGGGTCCCCGTGGTCTGCCTGGTGAGAGAGGTCGCCCTGGTGCTCCTGGCCCTGCTGGTGCTCGCGGAAACGATggtgctgctggtgctgctggacCTCCTGGACCCACTGGCCCTGCTGGTCCCCCTGGATTCCCTGGTGGTCCTGGTGCTAAGGGAGAGGCTGGTGCTCAGGGAGCTCGTGGAGGTGAAGGCCCCCAGGGTGCCCGTGGTGAGCCTGGTAACCCCGGACCTGCTGGTGCCCCCGGCCCATCTGGAAACCCTGGTACTGATGGTGCCGCTGGTGCTAAAGGCGGACCTGGTGCTCCCGGAATTGCTGGTGCTCCTGGCTTCCCCGGACCCCGTGGCCCCCCCGGACCTCAGGGCCCAGGTGGAGCTCCCGGTGCTAAGGGAAACAACGGTGATATTGGAGCCCCTGGTGCCAAGGGTGAGCCTGGTGCTAAAGGAGAGCCTGGTGCTGCTGGTGTGCACGGTGCCCCCGGACCTGCTGGTGAGGAAGGAAAGAGAGGTAGCCGTGGAGAGCCTGGCCCTGCTGGCGCCCCCGGACCCGCTGGCGAGCGTGGTGCTCCTGGCAACCGTGGTTTCCCTGGTGCTGATGGTGCTGCTGGTCCCAAGGGTGCAACTGGTGAGCGTGGTGCCCCCGGCCCTGCTGGTCCCAAGGGATCAACTGGCGAGTCTGGCCGTCCTGGTGAGCCTGGCATGCCCGGTGCTAAGGGTCTGACTGGTAGCCCTGGTAGCCCTGGTCCCGATGGCAAGACTGGTCCTTCTGGACCCGCTGGACAAGATGGTCGCCCTGGACCCCCCGGCCCCGCTGGAGCCAGAGGTCAGCCTGGTGTCATGGGATTCCCTGGACCTAAGGGTGCTGCTGGTGATGCTGGCAAGCCCGGTGAGAGAGGTGTTGCTGGACCTGCTGGTGCTGTTGGTGCTCCTGGCAAAGATGGTGATGCTGGTGCCCCTGGTGCCTCTGGCCCTGCTGGTCCCGCTGGAGAGAGAGGTGAACAAGGTCCCGCTGGTCCCCCTGGATTCCAGGGTCTGCCTGGTCCTCAGGGAGCAACTGGTGAGAGTGGCAAGCCCGGTGAGCAGGGTGTCCCCGGTGAGGCTGGTGCTCCTGGACCCGCTGGATCTAGAGGCGAGAGAGGTTTCCCCGGTGAGCGTGGTGCCCCTGGCGCTATTGGACCCGCTGGTGCCCGTGGCTCTCCTGGTTCTTCTGGTAACGATGGTGCCAAGggtgATGCTGGTGCTCCAGGTGCCCCCGGTGGTCAGGGTCCCCCTGGTCTGCAGGGAATGCCCGGTGAGCGCGGTGCTGCTGGACTCCCCGGCCTGAAGGGCGACAGAGGTGATGGTGGCCCCAAAGGTGCTGATGGTGCCCCTGGCAAAGATGGCGTTCGTGGTTTGACTGGTCCCATTGGTCCTCCCGGCCCTGCTGGTGCCCCTGGAGATAAGGGTGAGGGTGGTGCCCCTGGACCTGCTGGACCTACTGGCTCCCGTGGTGCCCCTGGTGAGCGTGGTGAAAGCGGTGCTCCCGGACCCGCTGGATTTGCTGGTCCCCCTGGTGCTGATGGCCAGCCTGGTGCTAAGGGAGAGGCTGGTGATACAGGTGCTAAAGGTGATGCTGGTGCCCCTGGCCCTGCTGGCCCCACTGGTGCTCCTGGACCTGCTGGTCCCGTTGGTGCTACTGGTCCCAAAGGTGCTCGTGGTACTGCTGGACCCCCTGGTGCTACTGGTTTCCCTGGCGCAGCTGGCAGAGTTGGACCCCCCGGCCCCGCTggtAACTCTGGCCCCCCTGGACCCCCTGGACCTGGTGGAAAGGAAGGACCCAAGGGTAACCGTGGTGACACCGGCCCTGCTGGTCGCCCTGGTGAGCCTGGCGCTGCTGGACCCCCCGGACCTTCTGGCGAGAAGGGATCTCCTGGTTCTGATGGTCCTTCTGGTGCCCCCGGTATTCCCGGACCTCAAGGTATTGCTGGACAGCGTGGTATTGTGGGTCTCCCAGGACAGAGAGGCGAGCGTGGTTTCCCTGGACTTCCTGGACCCTCTGGAGAGCCTGGCAAACAAGGACCTGGTGGCCCCTCTGGTGAGCGTGGACCCCCTGGCCCCAGTGGACCCCCTGGACTGTCTGGTGCTCCTGGTGAAGCTGGTCGTGAGGGTGCTTCTGGTAACGAGGGTGCTCCTGGCCGTGATGGTGCTCCTGGCCCCAAGGGTGACCGTGGTGAAACTGGCAGCGCTGGTGCCCCTGGTGCCCCCGGTGCTCCTGGCGCTCCTGGCCCTGTTGGCCCTGCTGGCAAATCTGGTGATCGTGGAGAGACTGGTCCTGCTGGCCCTGCCGGTCCTGCTGGTCCCGCTGGTGCTCGTGGTGCTGCTGGCCCTGCTGGTGCCCGTGGTGACAAGGGTGAGGCTGGCgaagctggagagagaggcatGAAGGGACACAGAGGTTTCACTGGCCTGCAGGGTCTGCCCGGACCTGCTGGACCCACTGGAGAACAAGGACCTGCTGGAGCATCTGGCCCTGCTGGACCAAGAGGTCCTTCCGGTTCTGCTGGTTCCCCTGGTAAGGATGGTGTGAGTGGACAGAATGGACCCATTGGACCCCCTGGCCCCCGTGGTCGCACTGGTGAAATTGGACCTGCTGGACCCCCCGGACCTCCCGGACCCCCCGGACCCCCAGGCCCCCCTGGTGGTGGATTCGACTTCGGATTCGTGTCTCAGCCCGCTCAGGAGAAGGCCCCCGATCCCTTCCGTCACTACAGAGCTGATGATGCCAATGTTGCCCGTGACCGCGACCTCGAGGTTGACACCACCCTCAAGTCCCTGAGCCAGCAGATCGAGAACATCCGCAGCCCTGAGGGCACCAAGAAGAACCCCGCCCGCACCTGCAAGGACCTGAAGATGTGCCACCCTGAATGGAAGAGCGgcGAGTACTGGATTGACCCCAACCAGGGATGCACTCTTGATGCCATCAAGGTCCACTGCAACATGGAGACTGGCGAGACCTGCGTCTACCCAACCCAGGCTAGCATCCCCCAGAAGAACTGGTACACAAGCAAGAACCCCAAGGACAAGAAGCACGTCTGGTTCGGCGAGGCAATGAGCGATGGATTCCAGTTCGAATATGGTAGCGAGGGCTCCAACGCCGATGATGTCAACATCCAGCTCACCTTCCTGCGTCTGATGTCCACCGAGAGCTCCCAGAACATCACATACCACTGCAAGAACAGCATTGCTTACATGGACCAGGAGGCAGGCAACCTGAAGAAGGCCCTGCTGCTGCAAGGCTCCAACGAGATCGAGATCAGAGCCGAGGGCAACAGCCGCTTCACCTACAGCGTCAGCGAGGATGGCTGCACGAGACACACTGGCTCATGGGGCAAGACAGTCATCGACTACAAGACAACGAAAACATCCCGTCTGCCCATCATTGACATCGCTCCTATGGACGTTGGTGCACCTGATCAGGAATTTGGCTTTGAAGTTGGCCCAGTCTGCTTCTTGTAAAAAAGAAATCTGGacttgaaattgtgttttttttttttctagccgTCATCTCTCTAAACTCTTTtctatgcattaaaaaaaaagtctcattCGGCCTCAAACGGTCCACTTGCTTAAATCTACACTCCTGAAGACGGTGGTTGTGTGTTatcaactttaaaaaaaaaagaaaaccttttttttttgggaccACTACTTTTACCGACACCTACATCAAggacactttaaaaaaaaaaaaatcttttgttTCACTGGCatcaagaaaataatatatacttgtaaagtgtaaaatcccctggagtttaaaaataagtaattgattACAGGTGACTTTTtttgacgttttttttttttaccactgcAGAAGGACAATGAAAAACCAAATGCTATGTACCGTTTTCAGGTGttaaataaatttgaaaaacGACAGTGAAGTGTCTTGTTGTTCTAAccacaaggagaaaaaaaaaacaggaaaagaaagcaTTGTTCAGAAAGTCTCATCAGGACAGGGGTTCATCTTTATTATGAAATCTTAAGGCTACCTCAGAAACAATCCGTGTGTCCTAGAGTCGAGTAAACACCAGGACAGGTTTTacactacaaaaaaaatcattatattaaacaaaataattaaatgcaaataacagCTGCAAAAGGTGCTATTTCTTCATGAGGTCCTGCAAGCagtgtataataaaaatattctttttcagatatatattattttcacagaaagcTTACAGGATCTTTGGTGCTAAACTAATTAAACAGTGTCTTCCTGTCAGAGAgtgacaattgtttttatttttttaaggtgttAGACCAAAACCTCTACAGTTGAGTTTCAGGAACTGAGAGATTACTGTAGACTGTCTTCTGTGAATTAAGCaggtggatttgttttttagttccatttttgtttttgtttttttccttcccctgtTCTTTTTTCCCACCCCCCCCAATTCCCCCTTTTTAGTCGTCATCTCGCTCCTTTCAGCAGCACACCACTTTTCTCccttcttctgtttgtttgtttttatttccagcgaagggtttaaaaaaatatgaaaataggaaaaaaattaaaaatttaaagaaaaaagaactccaagaagcagaaaaacactTTCGGGGGGTTAAACAAGAGGATGTGTAcctattttgtatatgtataataatttgagatgtttttaattattttgaatgctgAAATAAAGCATGTTAAGTGGTCTACCTAATTCTTGTGAGGTCTTATCTTGCCTTATTCTTGGTTGCACACCTGGATCCCTGTCTATCACCAACCAGTGTCCCAGATCCAGCTAGCACTAGCATTAGGAAGAGTATGTGGACACTGTGGAGTGTGTGCAACTTTGATTGCATTACACAAACCCGCCCCTGCTTCCCAACACATTTCTAAGAAGCGCATTTGCTCTCAGCCCTTAGCTCTGATGAGGGAATTAACTTGTATATCTGCCTATAGGGCATGCTGAGTGTGGGTACTCATACTTGAACTGGTCGCCCTTGGGAAATTGTTCACTGCTCATCTTTCAGTGACCCACCTGGGCTGATTATTTGCTAAAGCAGGCCTCTCCACTCTCTATTGACTTCTGCCTGTAAAACCTAAAGGGATTTGGTTCTGACAGGTTAAGACTCTCAGACAGGGACATCTAAAGGAATCAATTCTCAGGGAAAGGAGATTCCCACTGTAGTGGGAAGTACTGTATTCTCACAGTCTGGCTGTTAAACTTGCCAGCAATGTACCTGTCTCTTGTGCAGGGTCTTAACTGATCtgactgcctgcctgcctaCACTGAGCAGTGTAGTTGAGTGTTCAGGATGCTCTGGTCATAAGAGTATGTCTAGGGAGGTTTCAAAGATTACAGTGGTGTCTGTACTTTATTGTCCTGGTGCTTTCCACACTATAGTGtggttctatttagaacctttgggttcttcgtgagtttattttcattaaagggttcgtttaagaACAGCAAGGTCCGTCGTCAGCACAAGGGCtcatttaagaacccttttAAATCATGATTGCAGTTGATTTAAGATCCATTTAAgattctttaaggatccttgtgTGCAGGGAGCCTTggtaaaaggttctaataagaacctttaagggttcctccacagtatcaacccttATAAGAACCTTTACTTCTTAGAGTGTACAACTGGTCAGGACTATATAGTGTGCCCCTGGCCCTGTTCCTTATAGCTGGATAAATGAGTTGGCCAGATaactttcaggataacttgACTGAAGTCTGTCTTCTTCCATTCCTTAAAGCAAGCTTAAATTCCAGCTGAGTAGATTACCATAGAATCTGGCtgattagcctgaattagttaaCCCAGGTACGAGGATCGGGGGCCTGGTCTTCTCAGTCATTGGGGTCTCTAAGCTTTAAATGATCTAATGGAACCCTTCATTGAGTTTACAGTGGACCTCATTAGACCTGTCTTTCAGATCCTATGCCATTTAGTTACTTTTCAAACATGAGAGGTAACTTCTTTCACATAACTGTTCTAAAAGATCTTAAAGCATTGCATGAGATCTAACAGAGAACATTCTTagtcaattaagcaaattaagtgTAATTAGACGAGCTGATATTTCGAGGGACAAGAGCATTCAAGTCTAGAGGGATTTACACCAGTACTGGGTGTTGAATGTTTATAATGGGATTATAATATCTCCTTTCTTATGACTTCTCAGGTCGCCAGCAACAATCTCAAAGGTTGCTTTTGGAATAATGAGCTAGTGTCCGGCTGTTCACCGGTACTGTTGCGATGACCTAAAGGAGGAGGGGGAAAGATCGCGCCTATTTGATACTTTCTGTGTCTGCAGTACCGTTTTCTAACGTTCATATCGTTGCGTGTGTGAATGGGCAAGAGCAAACCGCGCACTGAGCTAATAAAATGGCATCCATGCGTCATTTGAACTATATTATGGCGTTGGTACTTTTGCGATAGTACTTTGCTCAGCATTACACAGAGATTACACAGCTGCTCCATCCTAGCGTGTTCACCTCGCGTCCCGCACGCGTCATCACACCCCGAACAAAGCGCCGCTTGTGCGCCTGCTGACGTCACCCGGAGAGCCCAGATAAGTAAAGGACTTTTTCCCAAACTTGCTGTAAAGTTCAGAATTCGACCGAGGACGAAGGATTCTAGGTTTTTCTTTGTAGGAAGCATGGACTTTCCCTTTTGAAAGAAAACCTGAACCAACCGTAGAGGACTGCAAAAGGTTCAGACTGGAGCGCTCGCTTTCTCTGTGTGGTGGAGGGAAGTGCGCGTCATATTCCGGGTTATATGCTTTCGTTTTCCTGTTCTGACAATGAAGTCCCTTTGGAAGACGTTTCGATGTTGATTATATAAAGATcctgattttatgtatttatttacttgcatTAACTGACATCAAGACAACAGTTctactttttcttgttttactttcGTCTTATTTTCATCTCAGCTGCGCTGTTTGCACATCACAGTATTAGACATGCATGTCGGCTTGATTAACTTTCTTTTCAATGTAGTACTATGTTTTCGATAGTTATGCTAGGCCTACATGTTTTCatgaatgtgttattaataataaaaactaaaagagTACAGTTATGCTTTCATTACAATTGAATGTATAAACAAGTTTCTGAGCGATATAGGATGGATTCTAGTGTATTTGTTAGGTTACTTAGCTGCGTTAACTGCCGTTATGTTGAAGTGAGCCATACATTAAACAAtgtacttttaataattttagaTAATGAATAGGCCTTTATGAAAGAGTTTCAAGTATAGTGGGTCAGTGGACTCTTCAGAGTATTATTTGAAACTGACAGGACAGCGTTTGTGTTTCAGGTCAGAGCAGAGTATTTGCATCGTGGACAGGAGCAGGCTGCAGCGACAATCCGATGAGAAGAGGTGTCGGGAGCTTCCAGTTTCACTATGTTTTACCTGGGCAGGGTGTCAATGTTTGGGTCCCTCTGGGCCAGGATGAGGGGGATGTGGGCGCTGTCGGAGCGGAAGGGCCTCTGCAGGGGGGGCACCCTATCCCCGGTGCGGGCGTTGAACATGGGGAGCGTGGAGAGGGGCCGGGGGACCCCGCGGCTGCCAGCCATGATCCTCAGCTCATCTGTGTTGTCATGGATGGTGTGATGGTGGTGCAGCTGGATATCTGACGTCTTTGTGTCCCGTTCCTCcctCCCCTCTCTTCGGCAGCACATGATGTAGGCTAGAATGACACAGAGGATGAGGGCCAACGCGAAGGGCACAAGCACGGTCCCGATGTAGTCTGGGAAGAAGTCCCGGCTCTCGGGAGATTCCGGTGGGTCATACAGATCGTCATCCAGAAGGATCCCCGAGCCGGGCGTGGGGACTGGAGGAGGGGGCACCCTTCTGGACAGGTCGATCAGCATGGTATTGCACCAGTCAATCCGGTTGTGGGCACTGAGCCACACAGCACATGGCACGGGGTCCATGCCCTGCTCGCACTCCTGCTGGTGCTTGGGATTCTGGAGCTGCCTCAGGCATTCCGGAAAGGCCCGGTCAGAGCCCAGTTTGATGTACACCCCCTCCTTGTGTCCTGGCAGAGGCAGGGGTACACGACCCCCCCTGTCCAGTGCAGAGGTGATGTTGACCACATCCAGGCGCTCGGTCTGCCACAGGACCTTGGCATACTGCACCACCTCATCCTGCACACCAGGGGGCAGCACTTCCTCAACATCTCTCAGAGGGAGGAAGAATTCCACCTGATAGGGCATCCTCTTCACTGGGGCACCCACCGAGATCATGATTTTCTGCCTGAAGGTGTCATATGTTTGCCGATTTGTAACCACGACCTCGATGATGGCTTTGCCCTGGTCCTGGGGCATCGGCGTGCCGTACAGGAAGCCATTGTGGCGGGGGCTCCTCTGGGTGTAGCGCAGCCAGCGGGGCAGATCAGGGAAGTGCTGAAGGCTGCACTTGAACACCATGGAGTCATCATTGACTATCCCATACTGCTGCAGGAAGGGGGGGAACTCGTTCTGGTAGACTTTCCTGTCCAGCTCGTACACAAACAACTGGCCCACCTGTGGATTAAGCTTGACGTCTGCATTGGCTGTCAGGACCCCGGCCAGACACACTGCTGACAACAATGAAATCCAGCCTAGGTTGCCTGCCATGTTG
>TU18885
TGCTGGGCCAGGATGAGGGGGATGTGGGCGCTGTCGGAGCGGAAGGGCCTCTGCAGGGGGGGCACCCTATCCCCGGTGCGGGCGTTGAACATGGGGAGCGTGGAGAGGGGCCGGGGGACCCCGCGGCTGCCAGCCATGATCCTCAGCTCATCTGTGTTGTCATGGATGGTGTGATGGTGGTGCAGCTGGATACTGAGGCCAAGAGGGAGGAGAAGTTTGTC
>TU18886
CCCTCTCTTCGGCAGCACATGATGTAGGCTAGAATGACACAGAGGATGAGGGCCAACGCGAAGGGCACAAGCACGGTCCCGATGTAGTCTGGGAAGAAGTCCCGGCTCTCGGGAGATTCCGGTGGGTCATACAGATCGTCATCCAGAAGGATCCCCGAGCCGGGCGTGGGGACTGGAGGAGGGGGCACCCTTCTGGACAGGTCGA

Function

symbol description
col1a1 Enables identical protein binding activity; platelet-derived growth factor binding activity; and protease binding activity. Involved in several processes, including animal organ morphogenesis; collagen biosynthetic process; and collagen fibril organization. Acts upstream of or within skeletal system development. Located in extracellular space. Part of collagen type I trimer. Colocalizes with collagen-containing extracellular matrix. Implicated in several diseases, including Ehlers-Danlos syndrome arthrochalasia type 1; aggressive periodontitis; bone disease (multiple); cutaneous leishmaniasis; and dentinogenesis imperfecta. Biomarker of several diseases, including alcoholic hepatitis; autoimmune disease (multiple); chronic obstructive pulmonary disease; end stage renal disease; and lupus nephritis.

NR:

description
collagen 1a1 precursor

GO:

id name namespace
GO:0031101 fin regeneration biological_process
GO:0030278 regulation of ossification biological_process
GO:0033334 fin morphogenesis biological_process
GO:0033339 pectoral fin development biological_process
GO:0005581 collagen trimer cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06236 COL1A; collagen type I alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016707 True 9655 mRNA 0.53 61 27964578 27998777
TU18885 False 221 lncRNA 0.44 1 27992062 27992282
TU18886 False 205 lncRNA 0.45 1 27992588 27992792

Neighbor

gene id symbol gene type direction distance location
AMCG00016704 NA coding upstream 76366 27881440 ~ 27888212 (+)
AMCG00016703 NA coding upstream 93392 27862189 ~ 27871186 (+)
AMCG00016697 NA coding upstream 140584 27822673 ~ 27823994 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 147385 27810648 ~ 27817193 (+)
AMCG00016696 NA coding upstream 199765 27764574 ~ 27764813 (+)
AMCG00016710 NA coding downstream 7507 28006284 ~ 28028274 (+)
AMCG00016708 LOC106607474,LOC106600853 coding downstream 41247 28040024 ~ 28051031 (+)
AMCG00016711 NA coding downstream 74818 28073595 ~ 28090180 (+)
AMCG00016720 NA coding downstream 155985 28154762 ~ 28181038 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding downstream 281721 28280498 ~ 28286427 (+)
G15025 NA non-coding upstream 594440 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 682009 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 690281 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1248777 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 1251449 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 118141 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 119766 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 161888 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 227065 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 436207 28434984 ~ 28435256 (+)
AMCG00016702 NA other upstream 85881 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 125475 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 131041 27829268 ~ 27833537 (+)
AMCG00016699 LOC106607176 other upstream 165452 27777427 ~ 27799126 (+)
AMCG00016690 NA other upstream 338488 27613105 ~ 27626090 (+)
G15223 NA other downstream 105960 28104737 ~ 28105711 (+)
AMCG00016731 NA other downstream 744583 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 1235727 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 2023830 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 2074161 30072938 ~ 30083528 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04479638_04501854 NA coding CI01000047 null 4479241 ~ 4501973 (-)