AMCG00016799 (smarcd2,LOC107569192,LOC107694073,LOC107684754,LOC107560559,LOC107753305)


Basic Information

Item Value
gene id AMCG00016799
gene name smarcd2,LOC107569192,LOC107694073,LOC107684754,LOC107560559,LOC107753305
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30984473 ~ 31001821 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016799
ATTACAGACACACGCAGCCAAGCCCTGTCTGATCGCTATCTTTAGACATTGGTCAGGCTCTTAAACTCTTTTTGTGTGccaaccatttaaaataaattggggGCTTGAACAAAGCCATAGATTCATGGGAAATGATGACACCAACATTATAGCACGGTTAGGTTGCTCAAGACGGGGAGTGCGCTTTTACAGAATACACAGGAACTCGTGTAGGGCTAAGACAGGAGACGCACACGTATATACCTGgaaacatacttaaaaaaaaatatatatatatatgtatatttatttctattctcAAGTAAGTGTATAGTAGAAAAGGTGATACTAAGCGTCGATCTgagctttaaaaaaagtttcGCTAAAGTTATTTGAAAAATGGCTTCGAGAGGGGGGTACCCAGTGAACACGGGTAGCCCAATGAACCCCATTATGAACCCCATGAATCCGGCGCAGGGTGGCGGGGCGAGGATGTCTCCTGCGATGCAACAGAGCTCGTCTGGATTTCGGCCCATGGGGTCTCCAGCTTCCCCATACCATCAGCGCCCAGGAATGCCCCCCACCCGCGGGATGTCGATGGGTGGGATGGGCATGGGGCCGGTCCCAGGTGCCTCCTACAACCCCTCAATGCCCATGAGAACCGGGATGCCCCAGCCGGTGATGGACCCCTTCCGAAAGAGACTgctacagcagcagcatcagcagcagcatcagcagcagcagggccTGTCTAACCAACGCAGAGGtatcAAAAGGCGAAAGATGGCAGACAAGATACTCCCACAAAGGATCAGGGAGCTGGTCCCCGAATCGCAGGCCTACATGGACCTTTTGGCCTTTGAGCGCAAACTCGATCAGACCATTGCTCGCAAGCGCATGGAGATACAGGAGGCCATCAAGAAGCCTATCACGCAAAAGCGCAAATTGCGGATCTACATCTCTAACACTTATACCCCAGCCAAACCGGAGGAAGAAGAAGCTGAGAAAATTGCATCCTGGGAACTACGTGTGGAAGGGAAGCTCTTGGAAGATCCTGGAAAACAGAAGAGGAAATTTTCGTCCTTCTTCAAGAGCTTGGTAATTGAATTGGACAAAGAGCTTTATGGGCCTGACAATCACCTAGTAGAGTGGCACCGAATGCCTACGACTCAGGAGACCGATGGGTTCCAGGTGAAGAGGCCTGGAGATGTCAGCGTGAAGTGCACATTACTGCTCATGCTGGACCATCAGCCGCCCCAGTATAAACTGGATCCACGCTTGGCTCGCTTACTGGGAGTCCACACCCAGACCAGAGCCAGCATCATGCAGGCCTTGTGGCTCTACATCAAGACCAACAAGCTACAGGACAGCCATGAGAAAGAGTACATCAACTGCAACCGCTACTTCAGACAGATTTTCAACTGCTCTCGGATGCGCTTCTCTGAGATCCCCATGAAGCTGGCTGGGCTGCTGCAGCACCCTGACCCCATCATCATCAATCATATCATAAGTGTGGATCCCAATGACCAGAAGAAGACTGCATGCTACGACATTGACGTCGAGGTGGATGACCCCTTAAAAGGGCAGATGACCAGCTTCCTGTCTTCCACCACTAACCAGCAGGAGATAGCTGCTCTGGAAATGAAGATCCATGAGACCATCGAATCCATCAACCAGCTCAAAACGCAACGTGACTTCATGCTGAGTTTCAGCAGCAAACCGCAGGAGTTCATTCAGGACTGGCTCAAGTCACAGTCGCGAGACCTCAAGCTCATGACTGACACGGCTGGAAACCCCgaagaggagaggaggacgGAGTTCTACCAGGCTCCATGGGTCCAGGAGGCGGTGGGGAGATACGTCTTCTCAAAGGTCCAGCAACGCAGACAAGAACTGGAGCAAGTCCTTGGAATTCGTCTCACTTAAAGCCAGTCTCTGCCGCCTGTACCATGCTTACAAAATGTTACTGTGGTATACTATGGTAAAAGCACAGCAGTGTATAAGTAAAGCACATTACAACCATGGTACAAGAATGGAAAATCAAATAATTCTGTGGTAAAGCATGGCGAAACTATGGCAAATCACCGTAACTTGATGCTATAAGCATTGGACAGCCATGGGGAAACTGTGAATTGACTGTGACTTTATGGTAAATTTTTTAAAGCTGTGCCTTATTTGTGACGTTCTCTAGCTCTTGGCAACCTGTTGTCTTTGCAATATTGTTCTCGATGGTACAGCAATGACTTTCCTTAAGGAGTTTAATTCAATTTGGGTCATGCTGTTCAAAGCCGAAATCTTAGTGACTTAAGTACCGAACTGGAAGGAACATCAgctaatacaatttatataatatatatatatattttttttattgataggatagcactGGAAACTCAGGGAAGGCCCTGTGTAGATTGAGGCATATCCACCCCCCACAACCGTAGTGGCTAGTAAACTATTGATTGGAGAGGCAAGGGTATCTATAAAGAGATTCTCCCCGTATCACTCAAATCAAAGGAAGTTATTTGAAAATTATCCaattttttcatttgcaaagtCTTCTCCCAATCTGAACCTTATAACTACATTCCACAGACACGtatacagttaaaaataaaaaaaaatgtgcgcAAATCACATGCTCAGCCTATATAAACCTGGATTACTTGTTTAGCCTACTGAAAAGGCAGAGTAAAACACAATTTCAGCTTGGGAAGAGACTTGTGATCCTGTAACCAGTGATTGGTGCTGAAAATGACAATTTTGAAGAAATTGGGGAATCGCATCATTCAATTAGAACGGGTTTGTATAGGTTTAAAGTGATACTGAATGgtctttacattttacatgttttaaatgtacttgaaGGGGGAATTCAGGCAGGCCTTTATCTTGCCTGTCAGTGGGGCTGTAAGCTCTTATCCCAAAAATGGCATCTCAGAGTTTCATTGAAGGGTTTGGGGAGGAGACCAGGCTTGACAGTTTGCTTTAGGGATAAGATGtgaacaaaatgttaattaagaaccacttttgtttttatttttttgtttttctagctTGCATTTATATAATTCCAGGTGATGTTTACCTTGCTATAACTGCTCTAATATGAGTATGGCGGGACTTTGTGATGCTTAATGTGAGGGTGCTGGGTactggggggttgggggggtgatTGTAATTAAGAAACATGGCAGGACTAATTGGGAATCTAAGCCATTTTTATTCCACTATGCACAGGAGCCATGGAGAACTTGCACATCATGTTTGTAGACCTTTGACCTCAATGTAGTCTTTTCAGGTTAGGATGGTAATGTTGAGGAAACTGTACCCCTGCAGAATCATATGGTTGACAAAAATAACATTCCAGCTCGGAGAGATCACCATATGCTACTTAAAATGAAAGCACTGCCAAGCCTTGTTACCATTTCTACGACCAACCAGCATTGTTATGCACTTAAACCCAACATTGGATTGGAGTATTTTCTTCTACACTGCTTGTATGTGTCTGCAAGGACACAAGTTACTTGATCAGTTACATCAATCAATATGATCTGCAGCAGTGCTTTGCGAATCTGAAATATGCCAGATGCCTTCAAATATTACCAAGGGTACATCtataattaaactgatttgGCATTGggtatacaaaacaatatttaaaaatactaattaaatgtatacGTCTTTAAATATACCCTTGTGAAAAGGAAAATCTTGCCCATATTTCAGTTCAAGGTAGTGAGGTACTATACATATACCAAAGCAATTCCTGGATATCTAATGACAATTAACATTTCTGCCATTAATGACTAACACATTTGctatgagttttttttatttcaaatgctttaAACAGCACACAATCCTTTCCTTAGATGGCATCTGCTTTTGATGGTGCCACATTTTTACAtcacttaaataaatgttaaaggCTTCATGTGAGGAGGCTGagtttataaagtatttttttatatatagtgttCCAAAAACAAGAGCACTTGGATGTTCCCATTTGTCAGAGTTGCTCTAGGCTTTACtgtttgttgtatttcaaaGATGGCATTCAAGCATTTTTTGCTTCTTGTTGGTATTTagaatttgttttatacttATGATGAACAAGTTGATGGACTTGTTTTCTGCTCTCTAAGGTTATGTATTATGCTTTCTGAGTAATCCTCAATGTGAGATTGCCTGCACTGAAAGAACCATTTCCCTACTGAAGCCCATAGCCTGACAATAATGCATTGGTCAGTTAATACATTTGCTGCAattgaaacaaatgtataaattcaGTTACAGTAatgatgtactgtatataatatctATCAGGTAAGTAATTTGGTTCTGGTACGAATTGTTGAAAATATACAGGAAGCATCCtctgcatttattgtttttcattcccatcattttgtattattgatcaAATTTAAGTTGCAGTTGCCTTTTGAGGGTAGTGTGTTATGGAGTAATGAGCaaagcaagacaaaaataaattgtgttataGCCTATTTCTTTTTTGgatttttaattctttatacTTTTAAAGTAAAGCATATGCAattctcttttttgtttacatgtaCTGATTGCATCTGGGTGAAAACTATAATTTTGAGAATCTGTGGaggtttcagtgtattttttgtacattgttggtttaaaccatgaaaaacatCAGGGGGTATCTGGACAGACTAGAACTATcgccaaaaaaataaacaaaaatgcaactACTAGAACGGCAAAATAACCTGGTCCAGCTTAGGCCTTGTGAAAGGTCATTTCTAGATTCTTTACAATTGTCAGAACActtgattttgtgtgtttttaacacAGTAATGTATCTAGTACTTTTGGCCGGCCTTGGTATAATGTGGGTATTTTTGTGGTAGAGACATGGTTCTGACAAGCAATATCCTTTAAAATACAGCATGGAATTTTTTTGaattttgcatgttttgtatttcattaaagcttatatatttcttttttatgaaaatgtatatattgaaacATGGGATTAGTTTtggtacatttgtaaaataaaatggc

Function

symbol description
smarcd2 Predicted to enable transcription coregulator activity. Acts upstream of or within hematopoietic progenitor cell differentiation and neutrophil differentiation. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Orthologous to human SMARCD2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2).

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like isoform X2

GO: NA

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016799 True 5040 mRNA 0.41 13 30984473 31001821

Neighbor

gene id symbol gene type direction distance location
AMCG00016797 asic2,LOC106600659,LOC108411330 coding upstream 34599 30924013 ~ 30949874 (+)
AMCG00016798 NA coding upstream 146119 30837725 ~ 30838354 (+)
AMCG00016796 NA coding upstream 406876 30576421 ~ 30577597 (+)
AMCG00016795 NA coding upstream 414651 30564566 ~ 30569822 (+)
AMCG00016789 atxn7l3,LOC107660606,LOC108276986 coding upstream 434043 30531032 ~ 30550430 (+)
AMCG00016805 NA coding downstream 71173 31072994 ~ 31103613 (+)
AMCG00016803 NA coding downstream 105608 31107429 ~ 31111908 (+)
AMCG00016804 NA coding downstream 111906 31113727 ~ 31129595 (+)
AMCG00016806 NA coding downstream 140587 31142408 ~ 31176537 (+)
AMCG00016808 NA coding downstream 181869 31183690 ~ 31230795 (+)
G15817 NA non-coding upstream 77634 30905610 ~ 30906839 (+)
G15730 NA non-coding upstream 552679 30429053 ~ 30431794 (+)
G15651 NA non-coding upstream 768763 30213172 ~ 30215710 (+)
G15605 NA non-coding upstream 964786 29930664 ~ 30019687 (+)
G15591 NA non-coding upstream 1090979 29890916 ~ 29893494 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding downstream 4076 31005897 ~ 31007006 (+)
G15853 NA non-coding downstream 31248 31033069 ~ 31033321 (+)
G15961 NA non-coding downstream 473486 31475307 ~ 31476218 (+)
G15966 NA non-coding downstream 502258 31504079 ~ 31504552 (+)
G15995 NA non-coding downstream 613399 31615220 ~ 31644515 (+)
G15659 NA other upstream 747632 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 871189 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 876746 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other upstream 900945 30072938 ~ 30083528 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other upstream 1727649 29234504 ~ 29256824 (+)
G15855 LOC105013322 other downstream 57519 31059340 ~ 31061145 (+)
AMCG00016820 NA other downstream 471885 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 699848 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 726735 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 1249987 32251808 ~ 32260627 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location