AMCG00016815


Basic Information

Item Value
gene id AMCG00016815
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31380547 ~ 31388268 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016815
ATGACAGAGGAAGGGAGGACGGTGCAGGTGGTGGGATTGCCCACTGGCATTTCAGAGGACCGCCTGTCGGACAAGCTGGCCATCCACTTCTTAAGGATCCGGAATGGAGGGGGAGAAATAACTGACATCACGTTCCCAGAGGACTCCCCCACCACTGCCCTGATCACCTTTGAAGAGATGGCCCAGAGGGTCTGTAGGCAAGGGAAGCACCTTATATCAGTGGATGACAGGACGTATGAAGTGAGTGTGAGATTGCCCTGCAATGAAGTCAACCCAGATGAGATCTTCTTGCGGATGTCCATGACCATAGACTATCTGCGACTGCCAGCTGGCAAAACTGTGATGAAGAACCTGAAGAAGAACTTTGCTGATGTGCAGTTCAGCTTTGACCAGAGAGAGGAACTCTGCACTGTCAAAGGCCGCTACTCTGAAATTCAGGACCTTGCCAATGAAGTGCTGAGCTTTCTGGAGACATCAGAGAGTGAAGGCTTTGCCAGTACCAAGCCAAGCAAGAAGAGTCCAGATGTTAGTGGAATGGCTGACCAAGGAAGAAGGGCCGAGAGGAAGAAAGCGACCAAGACAGGACAAAGTACAGTCCTTGACCCTGGGAATCACAAAAAGGATTACCCTCACAGTACTGGAGACGGGCACCTGCAGAGTGCAAGGCAAACAATGAACAGTGTGGAAGATTACTCCTTGATTATGGACTCGGATACCTATAGGTACATCCAGAAACACTGTGAGCAGGAATACAAGCGGATCCTCTGTAAGCACAAAGTGGAAGTGGTGGATATCTGCTGCAAGGATGTGACCACCTTGTTCTTACAGGCCAGTTCGGAAAATTTGGGAAGCCTGGACGGCTTACGAGAAGCTCACTGTGACCTGGGGATGCTCTATCAGCAGTATGAGACCAAGCTGCGGAAGGAGCAGATACCAAAAGGAGACTTAGATGGGAGAAGTCTCAAACTAGCCTATGAAATCCTCCAGATCCGTTTCCCCAAGATCCTTCTTAGTGAGGATGACAGCTACACTTATGTCATAGGCAGCTCCAGTGATGTCTCAGAAGCCAAACAATACTTTCTAGAGCTGGGACCCAAGATTGGAAAACAGGGAAGATTTGATCATGATCCTCCATCTGGTCTCAAGGACCCACTCTTTCCTGCCAGCACCCCACTGGACTCTAAATACGACAAACTTTTCAAGCCAGCTGGCTCTGGTAAGTCAGATGGTGCCAAAGACTATAAACTGGCAGCCAATTTCGATAGCTGCAGAGAGCCTGTGTTGAAAACCAAGCTGACGAGTGAGGACAGTCTCTTCACCCGGCCTGGGATAAACACGGCAGATTTTCTCTCGAGAGATTTCACCACCAAGGGAAGTCAGGCTTTCACTAGTGGCGATCTGTTCATGAGAGACCTGAAGGGCCCTGATCGGACGAGTGAAGACGTACTGTTTAAGAAACAAGAGGCGTCCTCCACAGTCAGTGGAATCAAAGAATGGAGGCCATTTCAAACTAACACACCGACCAGAACCAGTGGCCCGATCAAGGCCATCCAGTTTACAGCATCGCCGAGTAGCCTTCACCATATGGATCTCTTAGGGGGTGGTAATTTGCCAAGTGACACTGCTTTAGCCAGTACTTCACAAGCATTCGAGTTTAAGTCACCTTTGCGTCGGGCCAACAGTTTCTCGGGAAGGATTGGATCCAGAGAAGACAAGAAGTCATCGAGTTCCAACGAAGTCCCAGCCAACCTGAATAGAAACACCAACAGCAGCCCGAGAAAAGAAGAGACCTTTGTGGAAGAAATTATTGTTCCCTCTCGTACATGGCTTTATATGAAAGAGGCCTATAAAAATCGTCTTGTAAATCTGACCTCAGGGGTTCACGTGAAGGATGTTACAATGGAAAATAGCACAAAACTTACGCTTAAGGGGCCTGAAGCGCTGAAGGTCAGCAAGTGCAAGGAAGAGATACACAAACTGTATTCAATGGTGGAATTCGATTTAACCACCCAAGAGCTTGCCTTTTCACAATTGGGTGTTAAGGATTCGAAGGATGAAACCTTGGCAATGTTTTGCAAGGAAATGAGAGAAAAGTATGAGAAAGTTATAATGATCCCTGCTGATCGAAGTGTTTATGTAATGGGCCCAAAAGAGTTATGTTTGAGGATTTCGGATTGTCTGACAGAATTATTTAGTGCAGGAAGTTATAGAACTGAGGCATCTCCCACTGTGGGCTATCTTTCAGCTGCTTCTCTTTCATCTGTGACAGACAAACCTCAGCACAAGGAGCACTCCAGCCAGGCCAAAGTAAGTGAATATTTGAAGGACCAGGAGTCCACAACCAGTAAATACAGCTCCACTAATGGAAGTTTCagccaaaccaaaaaaacacataccCTCCATTGTTTGACCGATCACTCAGAATATCCATCACATGGCACAGTCGCAGAGGCACAGGTGGAGATCCTGGATCCTGCATATCAGCCTGAGCACAGGGTTCTGGAGGCTCAGGAGCTGCAGCATCACCAGGACCACAGCAGTTTTCCTCTGAAGGGCAAGAACGATGCCTTCACAAAGAAAGATGAGGGACATTTTTTTCTACAGAAGGACTTCAACGTGACTCAGAAtccagagagaggagagggggacaACGAAACCCTTGTAAGCACGAAAACCTTGAATAATAACAGGATGGGCTCTGATATCCTCCCAGGGCGGACGGAGATGCATAGGATTGACAGTGGGCCACAGTCGTTGCCTACGTGGTTGTACAGTTCACACAAAACAGCAGTCCAAGGCAAGGATGGGGATTTAGGCAACATAAAAGGTCCCAACCTTGATCAGCAGCTCCCTAAAGACTTCCAGGGCTTATCTAGAGGGCTGGATATGGAGGGACCAGATGCCGACAGTCGCCTGCAAAACACTGGCAAAGAACAGGATGCCCGTGCCCATACAGAGTCTACACAGACCTGCATGAGTTGCAGCATGGGTAAAGCCTTGCGGACCAAATGCGGCCTGTCCCTCTGCGATGACTGCCAGCTGAAGATGCATGCTACCTGCAGAGTCTGCTCCAAACCCAGTGGTGGCCTCAATGGGACCATGACCTTCACTGAGCTGTCGACCAGCCTGAGTGGATACCCCAAAGACATGACCATGAAGATAACTTACAGGATCCCTGATGGCATTCAAGGGgaAGTACACCCACACCCTGGTTTGCCATTCAAAGGAGGGATTTTCCATGCCTATTTGCCACTAAATGCAAAGGCTAATAAGCTGCTTCCATTGCTGAAAAAGGCCTTCAATCAGGGCCAGACCTTCACTATCAAAACAGGGGAGGCAGTGGACAAAGTGGTTTGGGGAAAGATGATTCCTCATAAAACCAAATTGGAAGGCGGAAAATCAGGGAATGGGTATCCAGATGCCAATTATCTCATTCATTTAGCGGAAGTGCTGAAGGCTCTTGGGATTGAATGAAACAAGTTAAGAGCGAGGCCTGCTGCACGGGTAGATCCAGGCATGACTCGGGGAAATATCCCGGAGCCCCGAAGAGAAACTTGCAAGACAGTTTTAAAAGAGTCTAATTTAAAGAGTCAGGTTGTATTTGACTTATTCCTGGTATTTTGATAATATGCTTTTGGATTATGAATCACCATTTTTTGTGCATATTCATAGAATTCCACCAGGGGCTGCTCAAACCATACCACTGGCTATTAATTCAATTACAGGctggcacatttttaaatagcttctggaaataaaggaaaaactcAATCTAATTCCCATCAATCTTTCAGCTAAAACGATCCTTAATCAGGATGCATGCTGAGAGCTCTTCCAGCTTTAACAATGCAGTGAATCAGTGGGCTGAATTGAACTGAGGATAAATGTGTGTGAGAAACTAATGTCGTTCAATTTCAAACTGCTTCGAGTACCTTTTTGATGGACACGGTTTCCAGACTGGCAAGCATTTCCAATGTGTTTCCATGTAAAATTCGccacatatttttaaactaacaCCTCCACAGTAGTTAACTCGGACACCGTACGGACTCCAAGTATCTCTCAAATCTTGCACTATACAGAAGACCTCCACCTTTGGAAAAGCACATCTTTGTAATTAAGATTATATGAACCAAAATGCATCACTAAATTGcagtaaacaattaaacaaatgctaGTTACCCTGTTATATGgtaaataaaatgattcaaGTGTTGCCAGGCTCTAGCTGCCGAACTGTAATGCTTTTATAATTGGTGGAACAGTCTCAAGATTAAACCCCACTGTGTAATTTGCAGGTTTCGTTACCTACAGCATCAGTAAGCGTTGTGACTCACAGATAATTATCTAATCATCAGTGGTAGGCCTTCCTGTGGTTTGGTATTAATAAATGGCATTACAGCCAATTTATTGAAATGAGTGGGATTCCAAGAGGAGCGTTAATTTAGATGACCCATCTCTGCGgaccaaaaaataattaaggcTGGCTATCATAGCAAACTGTTTGCTCATGCACTCTCACCAAACCAAAAAAGAGAGTGTAGTTCACAGAAGCAACCATGAACACCCAAGGGCCCTTTGACATGCTCAGTGTGGGGGTGATGCTTGTGTTGGAGCTGCTGTACTATTGCTTTGCTTGCGCTCATTCAATTGCCTCTGTAAGTGTCCTGCTGAATGCTTTCCACTCATCAGAGGTGATGAAAgcctgtaaataaatgtgtgaaactGG
>TU19783
ggaAGTACACCCACACCCTGGTTTGCCATTCAAAGGAGGGATTTTCCATGCCTATTTGCCACTAAATGCAAAGGCTAATAAGCTGCTTCCATTGCTGAAAAAGGCCTTCAATCAGGGCCAGACCTTCACTATCAAAACAGGGGAGGCAGTGGACAAAGTGGTTTGGGGAAAGATGATTCCTCATAAAACCAAATTGGAAGGCGGAAAATCAGGGAATGGGTATCCAGATGCCAATTATCTCATTCATTTAGCGGAAGTGCTGAAGGCTCTTGGGATTGAATGAAACAAGTTAAGAGCGAGGCCTGCTGCACGGGTAGATCCAGGCATGACTCGGGGAAATATCCCGGAGCCCCGAAGAGAAACTTGCAAGACAGTTTTAAAAGAGTCTAATTTAAAGAGTCAGGTTGTATTTGACTTATTCCTGGTATTTTGATAATATGCTTTTGGATTATGAATCACCATTTTTTGTGCATATTCATAGAATTCCACCAGGGGCTGCTCAAACCATACCACTGGCTATTAATTCAATTACAGGctggcacatttttaaatagcttctggaaataaaggaaaaactcAATCTAATTCCCATCAATCTTTCAGCTAAAACGATCCTTAATCAGGATGCATGCTGAGAGCTCTTCCAGCTTTAACAATGCAGTGAATCAGTGGGCTGAATTGAACTGAGGATAAATGTGTGTGAGAAACTAATGTCGTTCAATTTCAAACTGCTTCGAGTACCTTTTTGATGGACACGGTTTCCAGACTGGCAAGCATTTCCAATGTGTTTCCATGTAAAATTCGccacatatttttaaactaacaCCTCCACAGTAGTTAACTCGGACACCGTACGGACTCCAAGTATCTCTCAAATCTTGCACTATACAGAAGACCTCCACCTTTGGAAAAGCACATCTTTGTAATTAAGATTATATGAACCAAAATGCATCACTAAATTGcagtaaacaattaaacaaatgctaGTTACCCTGTTATATGgtaaataaaatgattcaaGTGTTGCCAGGCTCTAGCTGCCGAACTGTAATGCTTTTATAATTGGTGGAACAGTCTCAAGATTAAACCCCACTGTGTAATTTGCAGGTTTCGTTACCTACAGCATCAGTAAGCGTTGTGACTCACAGATAATTATCTAATCATCAGTGGTAGGCCTTCCTGTGGTTTGGTATTAATAAATGGCATTACAGCCAATTTATTGAAATGAGTGGGATTCCAAGAGGAGCGTTAATTTAGATGACCCATCTCTGCGgaccaaaaaataattaaggcTGGCTATCATAGCAAACTGTTTGCTCATGCACTCTCACCAAACCAAAAAAGAGAGTGTAGTTCACAGAAGCAACCATGAACACCCAAGGGCCCTTTGACATGCTCAGTGTGGGGGTGATGCTTGTGTTGGAGCTGCTGTACTATTGCTTTGCTTGCGCTCATTCAATTGCCTCTGTAAGTGTCCTGCTGAATGCTTTCCACTCATCAGAGGTGATGAAAgcctgtaaataaatgtgtgaaactGGGCTTTGCTGTTTTATTCTTCCATCTCACACCAATTTCTCCAAGGGCTCACGTTGCAAGAAAAAAGTAATCTTCTGTGGCCCGTCTCACCTTCTCTACGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016815 True 4729 mRNA 0.46 5 31380646 31388268
TU19783 False 1637 lncRNA 0.41 2 31380547 31383730

Neighbor

gene id symbol gene type direction distance location
AMCG00016811 NA coding downstream 43267 31336445 ~ 31337280 (-)
AMCG00016812 NA coding downstream 65159 31292282 ~ 31315388 (-)
AMCG00016807 becn1,LOC102786760 coding downstream 197246 31177556 ~ 31183301 (-)
AMCG00016802 LOC105013322 coding downstream 319861 31060351 ~ 31060686 (-)
AMCG00016800 NA coding downstream 364577 31012563 ~ 31015970 (-)
AMCG00016816 NA coding upstream 12549 31400817 ~ 31403944 (-)
AMCG00016823 nmt1,LOC102778525 coding upstream 255588 31643856 ~ 31653933 (-)
AMCG00016824 NA coding upstream 269980 31658248 ~ 31674496 (-)
AMCG00016831 NA coding upstream 367267 31755535 ~ 31762700 (-)
AMCG00016833 NA coding upstream 389144 31777412 ~ 31801252 (-)
G15927 NA non-coding downstream 1098 31370080 ~ 31379449 (-)
G15890 NA non-coding downstream 203945 31172185 ~ 31176602 (-)
G15864 NA non-coding downstream 273755 31103379 ~ 31106792 (-)
G15854 NA non-coding downstream 347227 31033070 ~ 31033320 (-)
G15845 NA non-coding downstream 378419 30998634 ~ 31002128 (-)
G15947 phb,LOC107661032 non-coding upstream 32476 31420744 ~ 31421968 (-)
G15962 NA non-coding upstream 88575 31476843 ~ 31481401 (-)
G15976 NA non-coding upstream 100993 31489261 ~ 31489836 (-)
G15982 NA non-coding upstream 115811 31504079 ~ 31504548 (-)
G15985 NA non-coding upstream 139782 31528050 ~ 31528621 (-)
G15787 NA other downstream 851047 30526292 ~ 30529500 (-)
G15706 NA other downstream 1178196 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 2154960 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 2595040 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 3223347 28130012 ~ 28157200 (-)
AMCG00016847 NA other upstream 873281 32261549 ~ 32267968 (-)
G16247 NA other upstream 1034790 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 1109239 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 1787808 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 2003521 33391789 ~ 33434651 (-)

Expression


Co-expression Network